Wall clock time and date at job start Tue Mar 31 2020 05:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42906 * 113.99942 * 2 1 4 4 C 1.52998 * 112.84766 * 295.39790 * 3 2 1 5 5 C 1.52999 * 109.47366 * 300.48720 * 4 3 2 6 6 N 1.46895 * 109.47293 * 185.50104 * 5 4 3 7 7 C 1.46951 * 111.00370 * 293.80063 * 6 5 4 8 8 C 1.53043 * 109.36719 * 176.81303 * 7 6 5 9 9 N 1.46956 * 109.36897 * 58.39926 * 8 7 6 10 10 C 1.46895 * 111.00269 * 176.81140 * 9 8 7 11 11 C 1.50699 * 109.47611 * 293.79868 * 10 9 8 12 12 H 1.08004 * 119.99252 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00199 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00241 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99684 * 180.02562 * 13 11 10 16 16 H 1.48490 * 109.47281 * 90.00341 * 15 13 11 17 17 H 1.48504 * 109.46765 * 210.00212 * 15 13 11 18 18 H 1.48499 * 109.47256 * 329.99829 * 15 13 11 19 19 C 1.46961 * 110.87825 * 300.68414 * 9 8 7 20 20 C 1.46960 * 111.00086 * 169.99579 * 6 5 4 21 21 C 1.53777 * 113.61296 * 164.20079 * 3 2 1 22 22 C 1.53960 * 87.01774 * 220.04779 * 21 3 2 23 23 C 1.53778 * 113.61108 * 66.59160 * 3 2 1 24 24 H 1.08997 * 109.47063 * 61.75184 * 1 2 3 25 25 H 1.08995 * 109.47216 * 301.74833 * 1 2 3 26 26 H 1.09004 * 109.46440 * 181.75057 * 1 2 3 27 27 H 1.09004 * 109.47102 * 60.48790 * 4 3 2 28 28 H 1.08996 * 109.47007 * 180.48405 * 4 3 2 29 29 H 1.09006 * 109.47112 * 305.50543 * 5 4 3 30 30 H 1.09001 * 109.47067 * 65.50148 * 5 4 3 31 31 H 1.09004 * 109.48797 * 296.78129 * 7 6 5 32 32 H 1.09002 * 109.48848 * 56.83954 * 7 6 5 33 33 H 1.09003 * 109.48901 * 298.43068 * 8 7 6 34 34 H 1.08999 * 109.49258 * 178.37086 * 8 7 6 35 35 H 1.09003 * 109.47105 * 53.80555 * 10 9 8 36 36 H 1.09001 * 109.47163 * 173.79297 * 10 9 8 37 37 H 0.96995 * 119.99975 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.48339 * 299.34649 * 19 9 8 39 39 H 1.09002 * 109.48841 * 179.28803 * 19 9 8 40 40 H 1.08999 * 109.49213 * 303.16402 * 20 6 5 41 41 H 1.09003 * 109.48576 * 63.22157 * 20 6 5 42 42 H 1.08999 * 113.61666 * 334.56675 * 21 3 2 43 43 H 1.08999 * 113.61528 * 105.47034 * 21 3 2 44 44 H 1.08992 * 113.53486 * 270.81228 * 22 21 3 45 45 H 1.08995 * 113.73942 * 139.94215 * 22 21 3 46 46 H 1.08997 * 113.61571 * 254.53115 * 23 3 2 47 47 H 1.09001 * 113.61951 * 25.35278 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.6995 2.0942 -1.2737 5 6 2.2360 1.3339 -2.4881 6 7 2.0556 2.1503 -3.6959 7 6 0.6296 2.3300 -4.0020 8 6 0.4833 3.2490 -5.2170 9 7 1.1946 2.6616 -6.3610 10 6 1.0142 3.4780 -7.5687 11 6 -0.4319 3.4378 -7.9910 12 1 -1.1456 2.8635 -7.4190 13 6 -0.8438 4.1350 -9.1069 14 7 0.0252 4.8348 -9.8031 15 14 -2.6365 4.0857 -9.6298 16 1 -3.3749 5.1929 -8.9712 17 1 -2.7264 4.2388 -11.1042 18 1 -3.2332 2.7860 -9.2299 19 6 2.6207 2.4819 -6.0548 20 6 2.7670 1.5628 -4.8398 21 6 3.4994 1.3168 0.3836 22 6 3.2000 2.5955 1.1872 23 6 1.7494 2.0959 1.2931 24 1 -0.3633 0.4864 -0.9052 25 1 -0.3633 0.5407 0.8738 26 1 -0.3632 -1.0273 0.0314 27 1 0.6208 2.2182 -1.3701 28 1 2.1743 3.0738 -1.2194 29 1 3.2963 1.1242 -2.3462 30 1 1.6919 0.3959 -2.5990 31 1 0.1802 1.3617 -4.2223 32 1 0.1272 2.7778 -3.1446 33 1 0.9084 4.2261 -4.9873 34 1 -0.5725 3.3605 -5.4636 35 1 1.3027 4.5078 -7.3576 36 1 1.6380 3.0833 -8.3707 37 1 -0.2646 5.3249 -10.5883 38 1 3.0701 3.4502 -5.8346 39 1 3.1231 2.0340 -6.9122 40 1 3.8229 1.4513 -4.5932 41 1 2.3419 0.5858 -5.0696 42 1 3.7970 0.4712 1.0036 43 1 4.1671 1.4782 -0.4627 44 1 3.3052 3.5104 0.6043 45 1 3.7166 2.6424 2.1458 46 1 1.0064 2.8853 1.1799 47 1 1.5663 1.4637 2.1619 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590168867.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:48 Heat of formation + Delta-G solvation = -16.865445 kcal Electronic energy + Delta-G solvation = -23136.473875 eV Core-core repulsion = 19933.908420 eV Total energy + Delta-G solvation = -3202.565456 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.33661 -38.59197 -36.01502 -35.24116 -32.60588 -30.86723 -30.26645 -27.67318 -27.25816 -25.94960 -25.10149 -23.55894 -23.16269 -21.84899 -21.14513 -19.16515 -18.87446 -17.03442 -16.30250 -16.16243 -15.52409 -15.36666 -15.07387 -14.61567 -14.44852 -14.19503 -14.13384 -13.75895 -13.45769 -13.07573 -12.83309 -12.54462 -12.25548 -12.08016 -11.95520 -11.74205 -11.50511 -11.33159 -11.16868 -11.02164 -10.89761 -10.82593 -10.68955 -10.57675 -10.43603 -10.23915 -10.17313 -9.71515 -9.57286 -9.15353 -8.42949 -8.08244 -7.19673 -6.01475 -4.02869 3.32007 3.38178 3.42544 3.55058 4.01256 4.30424 4.34231 4.43281 4.52488 4.64542 4.97205 5.09847 5.10195 5.20588 5.22526 5.26796 5.34038 5.41029 5.46403 5.47436 5.50892 5.57754 5.61484 5.64191 5.68884 5.79352 5.85648 5.88645 5.93658 6.04783 6.07225 6.08818 6.14027 6.26234 6.47598 6.62994 6.70788 7.07267 7.23025 7.30689 7.38163 7.41714 7.81716 8.11386 8.23666 8.57640 9.04746 9.61295 11.09456 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028448 B = 0.003252 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.006591 B = 8608.943901 C = 9040.757794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.091 3.909 4 C -0.119 4.119 5 C 0.063 3.937 6 N -0.541 5.541 7 C 0.057 3.943 8 C 0.068 3.932 9 N -0.539 5.539 10 C 0.194 3.806 11 C -0.507 4.507 12 H 0.062 0.938 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.897 3.103 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.273 1.273 19 C 0.057 3.943 20 C 0.062 3.938 21 C -0.122 4.122 22 C -0.138 4.138 23 C -0.163 4.163 24 H 0.043 0.957 25 H 0.040 0.960 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.035 0.965 31 H 0.037 0.963 32 H 0.068 0.932 33 H 0.028 0.972 34 H 0.085 0.915 35 H -0.009 1.009 36 H 0.029 0.971 37 H 0.261 0.739 38 H 0.030 0.970 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.038 0.962 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.031 -6.496 21.731 23.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.293 6.293 3 C 0.051 3.949 4 C -0.157 4.157 5 C -0.065 4.065 6 N -0.266 5.266 7 C -0.071 4.071 8 C -0.061 4.061 9 N -0.264 5.264 10 C 0.069 3.931 11 C -0.545 4.545 12 H 0.080 0.920 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.725 3.275 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.072 4.072 20 C -0.066 4.066 21 C -0.159 4.159 22 C -0.176 4.176 23 C -0.200 4.200 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.101 0.899 27 H 0.086 0.914 28 H 0.103 0.897 29 H 0.090 0.910 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.046 0.954 34 H 0.103 0.897 35 H 0.009 0.991 36 H 0.048 0.952 37 H 0.071 0.929 38 H 0.048 0.952 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.056 0.944 42 H 0.106 0.894 43 H 0.096 0.904 44 H 0.104 0.896 45 H 0.091 0.909 46 H 0.088 0.912 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.154 -6.550 21.543 23.100 hybrid contribution -1.205 0.278 -0.426 1.308 sum 3.949 -6.272 21.118 22.381 Atomic orbital electron populations 1.22676 0.81449 1.02385 1.00146 1.87924 1.19458 1.27040 1.94841 1.23048 0.94782 0.83426 0.93658 1.21812 1.01790 0.99571 0.92565 1.21907 1.00839 0.94312 0.89424 1.62192 1.11999 1.48772 1.03590 1.22264 0.87726 0.99313 0.97814 1.21979 1.00396 0.94569 0.89134 1.62270 1.07863 1.51518 1.04768 1.19698 0.97538 0.90046 0.85867 1.21158 0.93738 1.29006 1.10643 0.91962 1.24991 0.97765 0.95437 0.96435 1.69959 1.34004 1.31746 1.18126 0.86509 0.84954 0.78389 0.77639 1.20744 1.21257 1.19797 1.22061 0.91490 0.97793 0.95885 1.22133 0.97567 0.96617 0.90286 1.23078 0.94259 0.98218 1.00361 1.22721 0.96350 0.97784 1.00733 1.23543 0.97821 1.00199 0.98462 0.93830 0.94173 0.89930 0.91415 0.89699 0.91050 0.94688 0.94509 0.91352 0.95402 0.89703 0.99100 0.95244 0.92937 0.95187 0.91069 0.91285 0.94392 0.89378 0.90415 0.89608 0.90932 0.91180 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.58 101.05 1.07 1.34 16 2 O -0.37 -4.21 10.27 -35.23 -0.36 -4.57 16 3 C 0.09 0.89 0.82 -89.81 -0.07 0.82 16 4 C -0.12 -1.30 4.11 -26.73 -0.11 -1.41 16 5 C 0.06 0.80 4.73 -3.83 -0.02 0.78 16 6 N -0.54 -8.22 4.71 -234.48 -1.10 -9.32 16 7 C 0.06 0.93 5.41 -3.77 -0.02 0.91 16 8 C 0.07 1.37 5.43 -3.77 -0.02 1.34 16 9 N -0.54 -12.00 4.70 -235.92 -1.11 -13.11 16 10 C 0.19 5.15 4.72 -4.98 -0.02 5.13 16 11 C -0.51 -14.38 8.47 -34.44 -0.29 -14.67 16 12 H 0.06 1.75 7.13 -52.48 -0.37 1.37 16 13 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 15 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 C 0.06 1.07 5.61 -3.77 -0.02 1.05 16 20 C 0.06 0.98 5.61 -3.77 -0.02 0.96 16 21 C -0.12 -1.07 7.33 -25.83 -0.19 -1.26 16 22 C -0.14 -1.06 7.74 -25.82 -0.20 -1.26 16 23 C -0.16 -1.35 6.64 -25.92 -0.17 -1.52 16 24 H 0.04 0.42 6.91 -51.93 -0.36 0.06 16 25 H 0.04 0.32 7.53 -51.93 -0.39 -0.07 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.76 5.64 -51.93 -0.29 0.46 16 28 H 0.08 0.93 7.30 -51.93 -0.38 0.55 16 29 H 0.07 0.86 6.91 -51.93 -0.36 0.50 16 30 H 0.03 0.48 7.97 -51.93 -0.41 0.06 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.98 6.46 -51.93 -0.34 0.65 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.81 6.79 -51.93 -0.35 1.46 16 35 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 36 H 0.03 0.83 8.03 -51.93 -0.42 0.42 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 1.31 8.07 -51.93 -0.42 0.89 16 40 H 0.07 0.94 8.07 -51.93 -0.42 0.52 16 41 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.08 0.68 7.13 -51.93 -0.37 0.31 16 44 H 0.09 0.65 7.60 -51.93 -0.39 0.26 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 47 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 357.69 15.07 5.39 5.39 Total: -1.00 -30.45 357.69 -10.29 -40.75 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -8.64 Total: -3.32 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -0.19 Total: -6.32 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: -1.48 Total: -48.65 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.36 Total: -4.57 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.45 -10.29 -40.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590168867.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.882 kcal (2) G-P(sol) polarization free energy of solvation -30.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds