Wall clock time and date at job start Tue Mar 31 2020 05:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 119.99865 * 2 1 4 4 C 1.53003 * 109.47025 * 269.99928 * 3 2 1 5 5 H 1.08994 * 110.33118 * 65.79805 * 4 3 2 6 6 C 1.54907 * 110.37428 * 188.17566 * 4 3 2 7 7 C 1.55142 * 101.65201 * 155.89516 * 6 4 3 8 8 C 1.54313 * 103.02119 * 324.34720 * 7 6 4 9 9 N 1.47446 * 107.23256 * 22.28412 * 8 7 6 10 10 C 1.46898 * 111.00038 * 123.25916 * 9 8 7 11 11 C 1.34777 * 119.99758 * 179.97438 * 2 1 3 12 12 O 1.21279 * 119.99633 * 180.02562 * 11 2 1 13 13 C 1.50701 * 120.00115 * 359.97438 * 11 2 1 14 14 C 1.52997 * 109.47212 * 180.02562 * 13 11 2 15 15 C 1.52992 * 109.47482 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47482 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99734 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47432 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46890 * 120.00210 * 21 19 17 24 24 H 1.48501 * 109.47062 * 240.00257 * 21 19 17 25 25 H 1.09004 * 109.47413 * 270.00245 * 1 2 3 26 26 H 1.09003 * 109.47004 * 30.00026 * 1 2 3 27 27 H 1.09001 * 109.47557 * 150.00327 * 1 2 3 28 28 H 1.08999 * 109.47460 * 29.99619 * 3 2 1 29 29 H 1.08995 * 109.46789 * 150.00011 * 3 2 1 30 30 H 1.08997 * 110.98955 * 273.99069 * 6 4 3 31 31 H 1.08999 * 110.98842 * 37.80439 * 6 4 3 32 32 H 1.09003 * 110.70538 * 205.96111 * 7 6 4 33 33 H 1.08998 * 110.70152 * 82.73156 * 7 6 4 34 34 H 1.09001 * 109.88791 * 262.87733 * 8 7 6 35 35 H 1.09003 * 109.88688 * 141.68989 * 8 7 6 36 36 H 1.09000 * 109.46795 * 299.15456 * 10 9 8 37 37 H 1.08998 * 109.47296 * 59.15323 * 10 9 8 38 38 H 1.09001 * 109.47248 * 179.15171 * 10 9 8 39 39 H 1.09002 * 109.47060 * 60.00000 * 13 11 2 40 40 H 1.09001 * 109.46927 * 300.00196 * 13 11 2 41 41 H 1.09002 * 109.47153 * 60.00002 * 14 13 11 42 42 H 1.09001 * 109.46832 * 300.00193 * 14 13 11 43 43 H 1.09002 * 109.47103 * 59.99753 * 15 14 13 44 44 H 1.08998 * 109.46862 * 300.00565 * 15 14 13 45 45 H 1.09002 * 109.47153 * 59.99783 * 16 15 14 46 46 H 1.09001 * 109.46832 * 299.99974 * 16 15 14 47 47 H 0.97002 * 119.99768 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 1.5107 1.9437 -1.9392 6 6 3.3987 2.9365 -1.4719 7 6 4.0124 2.8247 -2.8924 8 6 4.1373 1.3005 -3.0982 9 7 3.1775 0.6560 -2.1831 10 6 2.2443 -0.2060 -2.9206 11 6 2.1388 -1.1672 0.0005 12 8 3.3516 -1.1672 0.0010 13 6 1.3853 -2.4723 0.0017 14 6 2.3795 -3.6353 0.0027 15 6 1.6145 -4.9602 0.0033 16 6 2.6087 -6.1232 0.0037 17 6 1.8552 -7.4283 0.0048 18 1 0.7752 -7.4283 0.0048 19 6 2.5446 -8.6223 0.0048 20 7 3.8597 -8.6223 0.0043 21 14 1.6105 -10.2400 0.0056 22 1 0.1505 -9.9687 0.0054 23 1 1.9689 -11.0190 -1.2069 24 1 1.9697 -11.0184 1.2181 25 1 -0.3634 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5138 28 1 1.6084 2.0284 0.5138 29 1 3.1498 1.1384 0.5138 30 1 2.8385 3.8648 -1.3605 31 1 4.1696 2.8531 -0.7058 32 1 4.9928 3.2999 -2.9272 33 1 3.3451 3.2606 -3.6358 34 1 5.1506 0.9761 -2.8614 35 1 3.8952 1.0446 -4.1298 36 1 1.6794 0.3957 -3.6326 37 1 2.8039 -0.9727 -3.4563 38 1 1.5571 -0.6805 -2.2201 39 1 0.7583 -2.5306 -0.8880 40 1 0.7590 -2.5294 0.8920 41 1 3.0061 -3.5768 0.8927 42 1 3.0061 -3.5783 -0.8873 43 1 0.9881 -5.0185 -0.8869 44 1 0.9875 -5.0174 0.8930 45 1 3.2355 -6.0651 0.8936 46 1 3.2353 -6.0657 -0.8864 47 1 4.3447 -9.4624 0.0047 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591525507.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:15 Heat of formation + Delta-G solvation = -46.020614 kcal Electronic energy + Delta-G solvation = -22937.205995 eV Core-core repulsion = 19733.376276 eV Total energy + Delta-G solvation = -3203.829719 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.19918 -38.65796 -35.46058 -34.75316 -32.61087 -32.25784 -30.94851 -29.39031 -26.99328 -26.30384 -25.48942 -24.37663 -22.09269 -21.34208 -20.31306 -19.90517 -18.82821 -16.94278 -16.37540 -16.13941 -15.94545 -15.82668 -15.26619 -14.40707 -14.28855 -14.12680 -13.68788 -13.40315 -13.28351 -12.95275 -12.81597 -12.62450 -12.50059 -12.18010 -11.94214 -11.60854 -11.55407 -11.51913 -11.40161 -11.31195 -11.20177 -10.94737 -10.91935 -10.44176 -10.43789 -10.32077 -9.54266 -9.49012 -9.12646 -8.90627 -8.72364 -8.26706 -8.17640 -5.91313 -3.93536 2.98833 3.07777 3.35575 3.42604 3.46671 3.82485 4.38958 4.44815 4.52147 4.71180 4.75179 4.94563 4.99443 5.06294 5.19804 5.24507 5.27478 5.29661 5.37867 5.43845 5.44477 5.49224 5.51043 5.52947 5.59500 5.64569 5.72446 5.86275 5.95858 5.98612 6.02374 6.23393 6.39061 6.54159 6.65137 6.93020 6.93548 7.00499 7.11290 7.26880 7.52464 7.79486 7.96282 8.11034 8.51948 8.53782 9.14582 9.69865 11.20063 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029717 B = 0.002955 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.003074 B = 9474.673322 C = 9918.370821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.627 5.627 3 C 0.133 3.867 4 C 0.056 3.944 5 H 0.051 0.949 6 C -0.122 4.122 7 C -0.141 4.141 8 C 0.042 3.958 9 N -0.509 5.509 10 C 0.024 3.976 11 C 0.513 3.487 12 O -0.506 6.506 13 C -0.138 4.138 14 C -0.101 4.101 15 C -0.109 4.109 16 C 0.020 3.980 17 C -0.518 4.518 18 H 0.054 0.946 19 C 0.054 3.946 20 N -0.895 5.895 21 Si 0.890 3.110 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.284 1.284 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.051 0.949 36 H 0.018 0.982 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.015 0.985 46 H 0.016 0.984 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.393 26.536 -3.841 27.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.363 5.363 3 C 0.009 3.991 4 C -0.054 4.054 5 H 0.069 0.931 6 C -0.161 4.161 7 C -0.179 4.179 8 C -0.086 4.086 9 N -0.233 5.233 10 C -0.125 4.125 11 C 0.301 3.699 12 O -0.378 6.378 13 C -0.178 4.178 14 C -0.139 4.139 15 C -0.147 4.147 16 C -0.017 4.017 17 C -0.557 4.557 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.718 3.282 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.036 0.964 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.312 26.060 -3.488 26.824 hybrid contribution -1.113 -0.432 -0.708 1.388 sum -6.425 25.628 -4.196 26.752 Atomic orbital electron populations 1.21750 0.80229 1.02817 1.01658 1.47882 1.06280 1.06158 1.75963 1.21380 0.97956 0.84783 0.94993 1.23022 0.95774 0.90735 0.95876 0.93131 1.22692 0.98853 0.96933 0.97597 1.22762 1.01413 0.96861 0.96872 1.22843 0.98163 0.92424 0.95134 1.63397 1.15821 1.18819 1.25240 1.22603 0.95857 0.97012 0.97033 1.20842 0.88391 0.85004 0.75616 1.90714 1.13720 1.86815 1.46598 1.21831 1.00014 0.92695 1.03252 1.21427 0.96996 0.92625 1.02883 1.21639 0.99027 0.94165 0.99884 1.19095 0.94068 0.91266 0.97291 1.21332 0.92995 0.91232 1.50123 0.92749 1.25044 0.94832 0.99200 0.95543 1.69989 1.06030 1.26328 1.51114 0.86569 0.80084 0.84007 0.77520 1.19800 1.21084 1.21068 0.92770 0.91777 0.90895 0.90930 0.89374 0.90947 0.90222 0.90714 0.91813 0.90393 0.93054 0.96371 0.91421 0.91259 0.89787 0.89651 0.91928 0.91844 0.93652 0.93618 0.96612 0.96611 0.93138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.59 10.05 59.85 0.60 1.20 16 2 N -0.63 -6.90 1.91 -181.57 -0.35 -7.25 16 3 C 0.13 1.32 5.25 -4.04 -0.02 1.30 16 4 C 0.06 0.53 2.82 -66.19 -0.19 0.35 16 5 H 0.05 0.46 7.77 -51.93 -0.40 0.06 16 6 C -0.12 -0.95 6.50 -24.59 -0.16 -1.11 16 7 C -0.14 -1.10 6.94 -24.91 -0.17 -1.28 16 8 C 0.04 0.44 6.90 -2.84 -0.02 0.42 16 9 N -0.51 -6.15 3.84 -231.60 -0.89 -7.03 16 10 C 0.02 0.28 8.51 60.06 0.51 0.79 16 11 C 0.51 7.53 5.15 -10.98 -0.06 7.47 16 12 O -0.51 -9.48 14.75 5.56 0.08 -9.39 16 13 C -0.14 -1.96 4.25 -27.88 -0.12 -2.08 16 14 C -0.10 -1.89 4.50 -26.74 -0.12 -2.01 16 15 C -0.11 -2.32 5.15 -26.74 -0.14 -2.46 16 16 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 17 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 18 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -27.88 13.29 55.43 0.74 -27.14 16 21 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.37 8.07 -51.93 -0.42 -0.05 16 27 H 0.07 0.53 6.44 -51.93 -0.33 0.19 16 28 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 29 H 0.09 1.09 7.34 -51.93 -0.38 0.71 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.67 8.00 -51.93 -0.42 0.25 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.50 7.58 -51.93 -0.39 0.11 16 36 H 0.02 0.18 8.09 -51.93 -0.42 -0.24 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.84 5.22 -51.93 -0.27 0.57 16 39 H 0.08 1.05 7.40 -51.93 -0.38 0.66 16 40 H 0.09 1.08 8.11 -51.93 -0.42 0.66 16 41 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 42 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 43 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 365.97 15.07 5.52 5.52 Total: -1.00 -34.22 365.97 -9.23 -43.45 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -8.87 Total: -4.29 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -0.43 Total: -10.99 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: -0.50 Total: -41.42 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.08 Total: -9.39 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.22 -9.23 -43.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591525507.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.575 kcal (2) G-P(sol) polarization free energy of solvation -34.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds