Wall clock time and date at job start Tue Mar 31 2020 05:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46499 * 120.00043 * 2 1 4 4 C 1.53001 * 109.47592 * 275.66109 * 3 2 1 5 5 H 1.09003 * 109.87891 * 53.75273 * 4 3 2 6 6 C 1.54316 * 109.88922 * 292.56052 * 4 3 2 7 7 C 1.55141 * 103.02067 * 218.30890 * 6 4 3 8 8 C 1.54905 * 101.65123 * 35.64861 * 7 6 4 9 9 N 1.47437 * 109.89378 * 174.78311 * 4 3 2 10 10 C 1.46899 * 110.99683 * 356.15415 * 9 4 3 11 11 C 1.34777 * 120.00097 * 180.02562 * 2 1 3 12 12 O 1.21276 * 119.99983 * 179.97438 * 11 2 1 13 13 C 1.50704 * 119.99714 * 359.97438 * 11 2 1 14 14 C 1.52997 * 109.47016 * 180.02562 * 13 11 2 15 15 C 1.53000 * 109.47233 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47233 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47251 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99715 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00253 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99634 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00218 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47006 * 59.99821 * 21 19 17 23 23 H 1.48497 * 109.47267 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47150 * 299.99918 * 21 19 17 25 25 H 1.08997 * 109.46688 * 264.98015 * 1 2 3 26 26 H 1.09010 * 109.47000 * 24.97908 * 1 2 3 27 27 H 1.08994 * 109.47114 * 144.97651 * 1 2 3 28 28 H 1.09007 * 109.47405 * 35.66142 * 3 2 1 29 29 H 1.09004 * 109.47258 * 155.66184 * 3 2 1 30 30 H 1.08999 * 110.70444 * 336.68827 * 6 4 3 31 31 H 1.09000 * 110.71038 * 99.92263 * 6 4 3 32 32 H 1.09008 * 110.98916 * 277.56209 * 7 6 4 33 33 H 1.08994 * 110.99314 * 153.73904 * 7 6 4 34 34 H 1.09008 * 110.37371 * 204.10451 * 8 7 6 35 35 H 1.08999 * 110.37453 * 81.76521 * 8 7 6 36 36 H 1.09001 * 109.47764 * 56.50557 * 10 9 4 37 37 H 1.09001 * 109.47083 * 176.50668 * 10 9 4 38 38 H 1.09001 * 109.47013 * 296.50177 * 10 9 4 39 39 H 1.09005 * 109.46987 * 60.00487 * 13 11 2 40 40 H 1.08999 * 109.47035 * 300.00601 * 13 11 2 41 41 H 1.08996 * 109.47357 * 59.99724 * 14 13 11 42 42 H 1.09002 * 109.46775 * 299.99785 * 14 13 11 43 43 H 1.09003 * 109.46338 * 299.99756 * 15 14 13 44 44 H 1.08996 * 109.47484 * 59.99423 * 15 14 13 45 45 H 1.08998 * 109.46976 * 299.99871 * 16 15 14 46 46 H 1.09006 * 109.47299 * 59.99356 * 16 15 14 47 47 H 0.97001 * 119.99321 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3294 1.7816 -1.4354 5 1 1.3459 1.8323 -1.9027 6 6 3.2512 0.8455 -2.2449 7 6 4.0547 1.8299 -3.1348 8 6 4.2264 3.0415 -2.1849 9 7 2.9541 3.1171 -1.4356 10 6 3.1785 3.5934 -0.0642 11 6 2.1390 -1.1672 -0.0005 12 8 3.3517 -1.1672 -0.0010 13 6 1.3854 -2.4723 -0.0005 14 6 2.3796 -3.6352 -0.0005 15 6 1.6146 -4.9602 -0.0012 16 6 2.6088 -6.1232 -0.0018 17 6 1.8553 -7.4282 -0.0018 18 1 0.7753 -7.4282 -0.0010 19 6 2.5447 -8.6223 -0.0018 20 7 3.8599 -8.6223 -0.0023 21 14 1.6107 -10.2400 -0.0011 22 1 0.7565 -10.3189 -1.2132 23 1 2.5757 -11.3687 -0.0018 24 1 0.7574 -10.3184 1.2118 25 1 -0.3632 -0.0899 1.0237 26 1 -0.3633 0.9316 -0.4340 27 1 -0.3633 -0.8415 -0.5898 28 1 1.6561 2.0009 0.5992 29 1 3.1901 1.1152 0.4235 30 1 3.9176 0.2934 -1.5821 31 1 2.6639 0.1625 -2.8587 32 1 3.4858 2.1072 -4.0224 33 1 5.0218 1.4084 -3.4087 34 1 4.3834 3.9546 -2.7592 35 1 5.0595 2.8734 -1.5024 36 1 3.7861 2.8685 0.4775 37 1 3.6961 4.5523 -0.0927 38 1 2.2197 3.7131 0.4402 39 1 0.7584 -2.5298 -0.8904 40 1 0.7590 -2.5302 0.8896 41 1 3.0063 -3.5775 0.8894 42 1 3.0062 -3.5774 -0.8906 43 1 0.9877 -5.0181 0.8887 44 1 0.9882 -5.0177 -0.8913 45 1 3.2354 -6.0650 -0.8918 46 1 3.2356 -6.0658 0.8882 47 1 4.3448 -9.4624 -0.0019 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591525508.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:17 Heat of formation + Delta-G solvation = -46.667471 kcal Electronic energy + Delta-G solvation = -22591.500602 eV Core-core repulsion = 19387.642834 eV Total energy + Delta-G solvation = -3203.857769 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.50253 -38.98478 -35.64205 -34.88560 -32.66293 -32.43475 -30.94039 -29.41609 -27.05768 -26.20258 -25.89674 -24.66944 -22.19916 -21.41240 -20.09837 -19.90759 -19.03955 -17.22110 -16.48929 -16.32826 -16.15583 -15.66157 -15.42511 -14.82487 -14.42818 -14.23004 -13.78341 -13.60375 -13.20016 -13.15629 -12.88073 -12.67728 -12.56835 -12.29687 -12.02362 -11.68767 -11.67753 -11.61600 -11.56229 -11.29601 -11.11514 -10.96248 -10.85307 -10.52578 -10.50761 -10.38911 -9.74498 -9.59920 -9.21307 -9.03164 -8.97417 -8.42084 -8.29477 -5.94420 -3.96983 2.67743 2.84541 3.35697 3.40051 3.42278 3.74397 4.37448 4.46976 4.48669 4.51601 4.70351 4.89340 4.92908 5.00736 5.02078 5.14027 5.17100 5.24511 5.31304 5.34133 5.40281 5.41721 5.44322 5.48490 5.58678 5.63856 5.73850 5.79298 5.87633 5.93840 6.10698 6.15036 6.28192 6.36852 6.55571 6.66514 6.72866 6.85033 7.02246 7.19974 7.28375 7.74670 7.91059 8.07019 8.21535 8.48794 9.10559 9.66532 11.16916 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032826 B = 0.002692 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.767531 B =10400.100834 C =10834.143541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.622 5.622 3 C 0.098 3.902 4 C 0.058 3.942 5 H 0.084 0.916 6 C -0.141 4.141 7 C -0.130 4.130 8 C 0.040 3.960 9 N -0.526 5.526 10 C 0.010 3.990 11 C 0.514 3.486 12 O -0.533 6.533 13 C -0.137 4.137 14 C -0.103 4.103 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.521 4.521 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.896 5.896 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.047 0.953 36 H 0.035 0.965 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.015 0.985 46 H 0.015 0.985 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.418 26.071 -2.047 26.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.357 5.357 3 C -0.026 4.026 4 C -0.051 4.051 5 H 0.102 0.898 6 C -0.180 4.180 7 C -0.168 4.168 8 C -0.087 4.087 9 N -0.251 5.251 10 C -0.139 4.139 11 C 0.303 3.697 12 O -0.409 6.409 13 C -0.177 4.177 14 C -0.141 4.141 15 C -0.147 4.147 16 C -0.017 4.017 17 C -0.559 4.559 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.720 3.280 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.945 26.314 -2.270 26.871 hybrid contribution -0.091 -1.419 0.419 1.483 sum -5.036 24.895 -1.851 25.466 Atomic orbital electron populations 1.21798 0.79353 1.03286 1.02010 1.47913 1.07002 1.05783 1.75019 1.22147 0.98543 0.85102 0.96776 1.22835 0.99114 0.87539 0.95646 0.89753 1.22969 0.98669 0.97600 0.98716 1.22693 1.00691 0.95263 0.98158 1.23081 0.90636 0.98934 0.96078 1.63794 1.23128 1.23930 1.14215 1.22619 1.01443 1.00148 0.89654 1.21117 0.88264 0.85478 0.74831 1.90660 1.14166 1.87218 1.48806 1.21820 1.00072 0.92021 1.03757 1.21455 0.97024 0.92754 1.02869 1.21645 0.99065 0.94018 1.00020 1.19086 0.94046 0.91258 0.97273 1.21249 0.92939 0.91222 1.50500 0.92817 1.25042 0.94844 0.99220 0.95462 1.69969 1.06052 1.26611 1.50871 0.86669 0.79575 0.83252 0.78548 1.20284 1.21321 1.20282 0.92476 0.91044 0.90716 0.90318 0.89487 0.89285 0.91237 0.90910 0.90732 0.90226 0.93421 0.94670 0.91453 0.91071 0.89200 0.89241 0.91876 0.91872 0.93514 0.93515 0.96622 0.96634 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.56 10.17 59.85 0.61 1.17 16 2 N -0.62 -6.55 2.78 -181.56 -0.50 -7.05 16 3 C 0.10 0.97 3.61 -4.04 -0.01 0.95 16 4 C 0.06 0.57 3.67 -66.73 -0.24 0.32 16 5 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 6 C -0.14 -1.58 5.74 -24.91 -0.14 -1.73 16 7 C -0.13 -1.22 7.08 -24.59 -0.17 -1.40 16 8 C 0.04 0.36 6.72 -2.30 -0.02 0.34 16 9 N -0.53 -4.89 5.44 -231.56 -1.26 -6.16 16 10 C 0.01 0.07 8.24 60.06 0.50 0.57 16 11 C 0.51 7.16 7.16 -10.98 -0.08 7.08 16 12 O -0.53 -9.36 13.52 5.56 0.08 -9.28 16 13 C -0.14 -1.84 4.32 -27.88 -0.12 -1.96 16 14 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 15 C -0.11 -2.28 5.15 -26.73 -0.14 -2.41 16 16 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 17 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 18 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.67 13.29 55.43 0.74 -26.94 16 21 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.40 8.03 -51.92 -0.42 -0.02 16 27 H 0.07 0.49 6.65 -51.93 -0.35 0.15 16 28 H 0.08 0.63 6.32 -51.92 -0.33 0.30 16 29 H 0.09 1.05 5.99 -51.93 -0.31 0.73 16 30 H 0.09 1.24 5.82 -51.93 -0.30 0.94 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.63 8.14 -51.92 -0.42 0.20 16 35 H 0.05 0.43 7.81 -51.93 -0.41 0.03 16 36 H 0.03 0.29 6.43 -51.93 -0.33 -0.04 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.47 6.83 -51.93 -0.35 0.12 16 39 H 0.09 1.05 7.41 -51.93 -0.38 0.67 16 40 H 0.09 1.06 8.11 -51.93 -0.42 0.64 16 41 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 42 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 363.01 15.07 5.47 5.47 Total: -1.00 -33.15 363.01 -9.64 -42.78 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -8.64 Total: -3.28 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -0.50 Total: -12.51 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: -1.03 Total: -40.14 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.08 Total: -9.28 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.15 -9.64 -42.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591525508.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.886 kcal (2) G-P(sol) polarization free energy of solvation -33.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds