Wall clock time and date at job start Tue Mar 31 2020 05:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46845 * 111.00094 * 2 1 4 4 C 1.53036 * 109.52620 * 174.15748 * 3 2 1 5 5 C 1.53124 * 109.27470 * 59.17986 * 4 3 2 6 6 C 1.53122 * 109.16270 * 302.34435 * 5 4 3 7 7 C 1.46845 * 110.99992 * 235.79104 * 2 1 3 8 8 H 1.08997 * 109.45356 * 65.82877 * 7 2 1 9 9 C 1.52996 * 109.46163 * 305.85455 * 7 2 1 10 10 C 1.53008 * 109.47060 * 174.73699 * 9 7 2 11 11 N 1.46895 * 109.47106 * 176.04129 * 10 9 7 12 12 C 1.47848 * 111.00051 * 290.84411 * 11 10 9 13 13 C 1.54908 * 104.79758 * 213.63751 * 12 11 10 14 14 C 1.55138 * 101.65190 * 37.07036 * 13 12 11 15 15 O 1.42906 * 110.70853 * 82.72950 * 14 13 12 16 16 C 1.50702 * 110.70274 * 205.96565 * 14 13 12 17 17 H 1.08005 * 120.00077 * 118.63447 * 16 14 13 18 18 C 1.37874 * 120.00086 * 298.62184 * 16 14 13 19 19 N 1.31519 * 120.00048 * 355.24519 * 18 16 14 20 20 Si 1.86804 * 119.99996 * 175.23523 * 18 16 14 21 21 H 1.48502 * 109.46866 * 95.00140 * 20 18 16 22 22 H 1.48500 * 109.47026 * 215.00102 * 20 18 16 23 23 H 1.48498 * 109.47157 * 335.00359 * 20 18 16 24 24 C 1.47441 * 111.00084 * 170.00424 * 11 10 9 25 25 H 1.08991 * 109.47090 * 190.11413 * 1 2 3 26 26 H 1.09002 * 109.47125 * 310.11933 * 1 2 3 27 27 H 1.09006 * 109.47083 * 70.11478 * 1 2 3 28 28 H 1.09004 * 109.46222 * 54.14681 * 3 2 1 29 29 H 1.08996 * 109.46530 * 294.17820 * 3 2 1 30 30 H 1.09006 * 109.50335 * 299.24415 * 4 3 2 31 31 H 1.08998 * 109.54368 * 179.14154 * 4 3 2 32 32 H 1.09007 * 109.52017 * 182.44291 * 5 4 3 33 33 H 1.08993 * 109.52047 * 62.25465 * 5 4 3 34 34 H 1.08995 * 109.50517 * 297.71761 * 6 5 4 35 35 H 1.09000 * 109.50075 * 177.58926 * 6 5 4 36 36 H 1.09002 * 109.47352 * 54.74248 * 9 7 2 37 37 H 1.08998 * 109.47318 * 294.74023 * 9 7 2 38 38 H 1.08999 * 109.47016 * 56.03999 * 10 9 7 39 39 H 1.09000 * 109.47149 * 296.04307 * 10 9 7 40 40 H 1.08998 * 110.37283 * 332.46946 * 12 11 10 41 41 H 1.08997 * 110.37716 * 94.80860 * 12 11 10 42 42 H 1.08998 * 110.98941 * 278.97844 * 13 12 11 43 43 H 1.09000 * 111.02311 * 155.17149 * 13 12 11 44 44 H 0.96694 * 113.99729 * 71.19176 * 15 14 13 45 45 H 0.96996 * 119.99777 * 180.02562 * 19 18 16 46 46 H 1.08999 * 109.88688 * 242.66385 * 24 11 10 47 47 H 1.09000 * 109.89217 * 3.68463 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 0.1468 5 6 4.1188 0.5370 -1.0143 6 6 3.5182 -0.8715 -1.0208 7 6 1.9952 -0.7707 -1.1337 8 1 1.7324 -0.2706 -2.0659 9 6 1.3891 -2.1754 -1.1204 10 6 1.8340 -2.9348 -2.3720 11 7 1.3304 -4.3135 -2.3131 12 6 2.0153 -5.0830 -1.2526 13 6 2.0986 -6.5284 -1.8036 14 6 2.3612 -6.2743 -3.3114 15 8 3.7499 -6.0353 -3.5492 16 6 1.8685 -7.4323 -4.1405 17 1 1.0940 -7.2780 -4.8773 18 6 2.4067 -8.6885 -3.9587 19 7 3.4134 -8.8590 -3.1297 20 14 1.7059 -10.1485 -4.8898 21 1 2.4990 -10.3750 -6.1247 22 1 1.7689 -11.3591 -4.0320 23 1 0.2928 -9.8721 -5.2528 24 6 1.5320 -5.0051 -3.5996 25 1 -0.3633 -1.0116 0.1805 26 1 -0.3633 0.6622 0.7859 27 1 -0.3633 0.3496 -0.9664 28 1 1.5634 1.9257 0.8330 29 1 1.7325 1.8608 -0.9375 30 1 3.7813 0.8567 1.0907 31 1 3.9105 2.3510 0.1316 32 1 5.1998 0.4714 -0.8904 33 1 3.8887 1.0355 -1.9559 34 1 3.7813 -1.3836 -0.0953 35 1 3.9099 -1.4302 -1.8708 36 1 0.3016 -2.1019 -1.1075 37 1 1.7277 -2.7089 -0.2322 38 1 2.9228 -2.9475 -2.4214 39 1 1.4359 -2.4401 -3.2579 40 1 3.0150 -4.6844 -1.0801 41 1 1.4330 -5.0611 -0.3315 42 1 1.1575 -7.0577 -1.6550 43 1 2.9265 -7.0728 -1.3495 44 1 4.3060 -6.8206 -3.4537 45 1 3.7922 -9.7428 -3.0022 46 1 0.5681 -5.2810 -4.0273 47 1 2.0712 -4.3557 -4.2893 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592147333.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:58 Heat of formation + Delta-G solvation = -55.519940 kcal Electronic energy + Delta-G solvation = -23477.727021 eV Core-core repulsion = 20273.485381 eV Total energy + Delta-G solvation = -3204.241640 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.52652 -38.24061 -35.06662 -33.69674 -32.84519 -32.09267 -29.87527 -28.15504 -27.46209 -26.50801 -24.53933 -23.40026 -22.54665 -20.97117 -19.94887 -19.58147 -19.33642 -17.09900 -16.06054 -15.50660 -15.06268 -14.88430 -14.71235 -14.45615 -14.31831 -13.94592 -13.91764 -13.51024 -13.12087 -12.70470 -12.48223 -12.17239 -12.01760 -11.85944 -11.79243 -11.68591 -11.28474 -11.19463 -11.08887 -10.93141 -10.76530 -10.61198 -10.51869 -10.40944 -10.33263 -10.17964 -10.03390 -9.82747 -9.20094 -8.58065 -8.38078 -8.07317 -7.56543 -6.20293 -4.27628 3.22952 3.30652 3.34982 3.78252 4.31468 4.58637 4.70054 4.80653 4.87034 4.98917 5.06925 5.21947 5.31554 5.34842 5.39511 5.44813 5.54871 5.60397 5.66917 5.72910 5.78839 5.81699 5.84509 5.89926 6.00253 6.06326 6.09181 6.14792 6.21712 6.30214 6.35454 6.40465 6.50195 6.52811 6.63692 6.99517 7.01974 7.06775 7.13577 7.48313 7.53209 7.73533 7.82609 7.88700 8.16072 8.74682 9.40042 9.53060 10.86475 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038138 B = 0.003418 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.998982 B = 8189.468492 C = 8502.556736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.539 5.539 3 C 0.056 3.944 4 C -0.117 4.117 5 C -0.122 4.122 6 C -0.115 4.115 7 C 0.089 3.911 8 H 0.038 0.962 9 C -0.108 4.108 10 C 0.054 3.946 11 N -0.531 5.531 12 C 0.043 3.957 13 C -0.129 4.129 14 C 0.236 3.764 15 O -0.593 6.593 16 C -0.533 4.533 17 H 0.062 0.938 18 C 0.069 3.931 19 N -0.897 5.897 20 Si 0.899 3.101 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.272 1.272 24 C 0.058 3.942 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.024 0.976 28 H 0.071 0.929 29 H 0.029 0.971 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.037 0.963 39 H 0.061 0.939 40 H 0.036 0.964 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.383 0.617 45 H 0.267 0.733 46 H 0.078 0.922 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.554 16.975 6.228 18.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.263 5.263 3 C -0.072 4.072 4 C -0.155 4.155 5 C -0.160 4.160 6 C -0.153 4.153 7 C -0.020 4.020 8 H 0.056 0.944 9 C -0.146 4.146 10 C -0.076 4.076 11 N -0.255 5.255 12 C -0.084 4.084 13 C -0.168 4.168 14 C 0.196 3.804 15 O -0.403 6.403 16 C -0.572 4.572 17 H 0.080 0.920 18 C -0.133 4.133 19 N -0.537 5.537 20 Si 0.727 3.273 21 H -0.206 1.206 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.069 4.069 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.042 0.958 28 H 0.090 0.910 29 H 0.047 0.953 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.055 0.945 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.233 0.767 45 H 0.077 0.923 46 H 0.096 0.904 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.038 17.262 6.732 18.640 hybrid contribution 0.410 -1.056 -1.274 1.705 sum -1.628 16.206 5.458 17.178 Atomic orbital electron populations 1.22410 0.87445 1.02832 0.99878 1.61907 1.07530 1.13038 1.43861 1.22075 0.95675 0.89378 1.00043 1.21588 0.94466 0.99856 0.99546 1.21597 0.99960 0.96182 0.98236 1.21706 0.93953 0.96676 1.02942 1.21630 0.95027 0.94348 0.90985 0.94406 1.21655 1.00813 0.93251 0.98893 1.22258 0.97716 0.90439 0.97140 1.63627 1.55108 1.01116 1.05637 1.23051 0.95531 0.95563 0.94273 1.23114 1.01595 0.92954 0.99105 1.19724 0.79468 0.90620 0.90637 1.86070 1.20136 1.40476 1.93620 1.21614 1.21484 0.92970 1.21129 0.91980 1.25024 0.94500 0.99005 0.94727 1.69666 1.23805 1.23732 1.36478 0.86463 0.79626 0.81667 0.79575 1.20636 1.21036 1.19683 1.22820 0.99225 0.95190 0.89673 0.90554 0.91863 0.95769 0.91038 0.95267 0.91112 0.91858 0.91810 0.92463 0.91041 0.90995 0.91250 0.91143 0.94493 0.92051 0.94530 0.92255 0.91979 0.90872 0.76655 0.92341 0.90414 0.93768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 8.90 60.06 0.53 0.76 16 2 N -0.54 -6.19 4.75 -234.93 -1.12 -7.30 16 3 C 0.06 0.55 5.46 -3.84 -0.02 0.53 16 4 C -0.12 -1.08 6.09 -26.65 -0.16 -1.24 16 5 C -0.12 -1.23 6.00 -26.60 -0.16 -1.39 16 6 C -0.12 -1.39 5.12 -26.65 -0.14 -1.52 16 7 C 0.09 1.10 1.90 -67.72 -0.13 0.97 16 8 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 9 C -0.11 -1.52 4.53 -26.73 -0.12 -1.64 16 10 C 0.05 0.89 4.41 -3.82 -0.02 0.87 16 11 N -0.53 -10.46 5.16 -231.25 -1.19 -11.65 16 12 C 0.04 0.88 5.72 -2.30 -0.01 0.86 16 13 C -0.13 -3.04 5.53 -24.59 -0.14 -3.18 16 14 C 0.24 5.93 0.87 -89.95 -0.08 5.85 16 15 O -0.59 -15.60 13.12 -35.23 -0.46 -16.06 16 16 C -0.53 -14.41 8.21 -34.44 -0.28 -14.70 16 17 H 0.06 1.67 7.58 -52.48 -0.40 1.27 16 18 C 0.07 1.84 5.22 -17.82 -0.09 1.75 16 19 N -0.90 -24.06 10.67 55.43 0.59 -23.47 16 20 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 C 0.06 1.30 6.21 -2.84 -0.02 1.28 16 25 H 0.08 0.82 6.46 -51.93 -0.34 0.48 16 26 H 0.06 0.55 7.99 -51.93 -0.41 0.14 16 27 H 0.02 0.24 8.12 -51.93 -0.42 -0.18 16 28 H 0.07 0.62 8.01 -51.93 -0.42 0.20 16 29 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.93 6.53 -51.93 -0.34 0.59 16 36 H 0.07 0.97 6.15 -51.93 -0.32 0.65 16 37 H 0.07 1.07 7.38 -51.93 -0.38 0.69 16 38 H 0.04 0.65 6.12 -51.93 -0.32 0.33 16 39 H 0.06 0.98 8.03 -51.93 -0.42 0.56 16 40 H 0.04 0.75 7.62 -51.93 -0.40 0.35 16 41 H 0.06 1.10 8.13 -51.93 -0.42 0.68 16 42 H 0.06 1.51 8.04 -51.93 -0.42 1.09 16 43 H 0.07 1.83 7.64 -51.93 -0.40 1.43 16 44 H 0.38 10.28 7.14 45.56 0.33 10.60 16 45 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 46 H 0.08 1.73 7.66 -51.93 -0.40 1.33 16 47 H 0.04 0.98 7.48 -51.93 -0.39 0.59 16 LS Contribution 350.12 15.07 5.28 5.28 Total: -1.00 -27.21 350.12 -10.71 -37.91 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -7.95 Total: 10.39 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -0.83 Total: -10.79 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: -1.72 Total: -42.42 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.46 Total: -16.06 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -27.21 -10.71 -37.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147333.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.606 kcal (2) G-P(sol) polarization free energy of solvation -27.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds