Wall clock time and date at job start Tue Mar 31 2020 05:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46838 * 111.00401 * 2 1 4 4 C 1.53035 * 109.52612 * 185.84004 * 3 2 1 5 5 C 1.53112 * 109.31123 * 300.79983 * 4 3 2 6 6 C 1.53205 * 109.11540 * 57.63814 * 5 4 3 7 7 C 1.46845 * 110.99811 * 124.21173 * 2 1 3 8 8 H 1.08997 * 109.46375 * 294.17067 * 7 2 1 9 9 C 1.53001 * 109.46262 * 54.15417 * 7 2 1 10 10 C 1.53009 * 109.46923 * 183.63849 * 9 7 2 11 11 N 1.46896 * 109.46708 * 174.79880 * 10 9 7 12 12 C 1.47442 * 111.00198 * 69.88002 * 11 10 9 13 13 C 1.54318 * 107.23607 * 123.25664 * 12 11 10 14 14 C 1.55139 * 103.02015 * 22.27784 * 13 12 11 15 15 O 1.42907 * 110.98653 * 82.44197 * 14 13 12 16 16 C 1.50700 * 110.99257 * 206.21836 * 14 13 12 17 17 H 1.07994 * 119.99945 * 118.54840 * 16 14 13 18 18 C 1.37875 * 120.00124 * 298.55331 * 16 14 13 19 19 N 1.31517 * 120.00039 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 120.00058 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47281 * 59.99579 * 20 18 16 22 22 H 1.48504 * 109.47038 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46836 * 299.99560 * 20 18 16 24 24 C 1.47852 * 110.99914 * 190.71954 * 11 10 9 25 25 H 1.09000 * 109.47013 * 53.03950 * 1 2 3 26 26 H 1.08994 * 109.47588 * 173.04575 * 1 2 3 27 27 H 1.09007 * 109.46862 * 293.04120 * 1 2 3 28 28 H 1.09006 * 109.46110 * 65.82335 * 3 2 1 29 29 H 1.09006 * 109.46283 * 305.85826 * 3 2 1 30 30 H 1.09000 * 109.50185 * 60.76274 * 4 3 2 31 31 H 1.09000 * 109.50310 * 180.83945 * 4 3 2 32 32 H 1.09000 * 109.52099 * 177.57527 * 5 4 3 33 33 H 1.08998 * 109.52775 * 297.76779 * 5 4 3 34 34 H 1.08998 * 109.49070 * 182.41993 * 6 5 4 35 35 H 1.08996 * 109.52713 * 62.33233 * 6 5 4 36 36 H 1.08999 * 109.47223 * 303.63633 * 9 7 2 37 37 H 1.08997 * 109.47357 * 63.64393 * 9 7 2 38 38 H 1.08998 * 109.47249 * 294.80261 * 10 9 7 39 39 H 1.08998 * 109.47094 * 54.80190 * 10 9 7 40 40 H 1.09005 * 109.88612 * 242.65824 * 12 11 10 41 41 H 1.08992 * 109.88901 * 3.84365 * 12 11 10 42 42 H 1.08995 * 110.70715 * 140.66574 * 13 12 11 43 43 H 1.08999 * 110.70287 * 263.90094 * 13 12 11 44 44 H 0.96700 * 113.99977 * 61.45421 * 15 14 13 45 45 H 0.97002 * 120.00083 * 180.02562 * 19 18 16 46 46 H 1.09005 * 110.36810 * 332.46656 * 24 11 10 47 47 H 1.09001 * 110.37509 * 94.80277 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3708 0.0000 4 6 3.5182 1.3340 -0.1468 5 6 4.1196 0.5374 1.0143 6 6 3.5181 -0.8716 1.0207 7 6 1.9952 -0.7708 1.1337 8 1 1.7325 -0.2709 2.0660 9 6 1.3892 -2.1756 1.1202 10 6 1.8666 -2.9489 2.3512 11 7 1.1888 -4.2510 2.4046 12 6 1.6635 -5.1384 1.3271 13 6 2.1955 -6.4241 1.9946 14 6 1.4726 -6.4300 3.3672 15 8 0.1546 -6.9698 3.2493 16 6 2.2729 -7.1871 4.3956 17 1 2.6343 -6.6808 5.2783 18 6 2.5437 -8.5261 4.2093 19 7 2.1032 -9.1428 3.1344 20 14 3.5363 -9.4644 5.4836 21 1 2.8328 -9.4190 6.7906 22 1 3.6868 -10.8772 5.0517 23 1 4.8779 -8.8429 5.6217 24 6 1.4251 -4.9185 3.7025 25 1 -0.3633 0.6179 -0.8212 26 1 -0.3634 -1.0200 -0.1244 27 1 -0.3633 0.4023 0.9458 28 1 1.7325 1.8607 0.9376 29 1 1.5634 1.9257 -0.8330 30 1 3.7813 0.8566 -1.0906 31 1 3.9099 2.3511 -0.1317 32 1 5.2006 0.4724 0.8900 33 1 3.8896 1.0358 1.9559 34 1 3.9099 -1.4304 1.8706 35 1 3.7812 -1.3843 0.0956 36 1 0.3018 -2.1024 1.1363 37 1 1.7049 -2.6988 0.2176 38 1 2.9439 -3.1022 2.2887 39 1 1.6322 -2.3801 3.2509 40 1 0.8388 -5.3824 0.6573 41 1 2.4640 -4.6509 0.7708 42 1 1.9217 -7.3030 1.4110 43 1 3.2759 -6.3701 2.1283 44 1 0.1313 -7.8879 2.9467 45 1 2.2934 -10.0849 3.0036 46 1 2.3747 -4.5943 4.1285 47 1 0.6074 -4.7081 4.3919 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592147334.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:00 Heat of formation + Delta-G solvation = -54.103847 kcal Electronic energy + Delta-G solvation = -23394.976509 eV Core-core repulsion = 20190.796275 eV Total energy + Delta-G solvation = -3204.180234 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.54751 -38.23794 -35.07739 -33.71633 -32.84095 -32.10465 -29.82902 -28.16021 -27.48035 -26.52388 -24.58666 -23.46578 -22.58813 -21.03995 -19.88484 -19.61323 -19.27253 -17.01087 -16.00724 -15.46288 -15.39230 -14.86000 -14.66910 -14.46737 -14.35859 -14.20665 -13.83426 -13.29947 -12.95592 -12.85065 -12.53849 -12.41723 -12.01945 -11.81295 -11.78679 -11.58967 -11.27531 -11.18801 -11.16342 -10.92182 -10.81628 -10.75753 -10.49126 -10.42534 -10.38713 -10.19234 -10.07483 -9.78970 -9.14164 -8.57055 -8.39774 -8.04575 -7.52973 -6.18699 -4.27006 3.24492 3.29440 3.32291 3.76761 4.30663 4.57045 4.67183 4.77378 4.83818 4.96411 5.08697 5.19540 5.28794 5.32346 5.37793 5.43747 5.53314 5.57977 5.63907 5.68143 5.77435 5.80816 5.83810 5.87967 5.94478 5.98322 6.03914 6.09843 6.11669 6.20104 6.26828 6.40782 6.47589 6.54752 6.72108 6.91753 7.00391 7.05102 7.12626 7.45841 7.52775 7.70048 7.82859 7.88306 8.20436 8.75013 9.41541 9.55411 10.88130 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031731 B = 0.003463 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.205861 B = 8084.656772 C = 8541.171224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.539 5.539 3 C 0.056 3.944 4 C -0.117 4.117 5 C -0.122 4.122 6 C -0.114 4.114 7 C 0.088 3.912 8 H 0.039 0.961 9 C -0.109 4.109 10 C 0.053 3.947 11 N -0.528 5.528 12 C 0.044 3.956 13 C -0.144 4.144 14 C 0.252 3.748 15 O -0.579 6.579 16 C -0.537 4.537 17 H 0.059 0.941 18 C 0.072 3.928 19 N -0.895 5.895 20 Si 0.899 3.101 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.277 1.277 24 C 0.059 3.941 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.024 0.976 28 H 0.029 0.971 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.032 0.968 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.037 0.963 42 H 0.076 0.924 43 H 0.054 0.946 44 H 0.376 0.624 45 H 0.267 0.733 46 H 0.045 0.955 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.575 17.582 -6.480 18.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.263 5.263 3 C -0.072 4.072 4 C -0.155 4.155 5 C -0.160 4.160 6 C -0.152 4.152 7 C -0.020 4.020 8 H 0.057 0.943 9 C -0.147 4.147 10 C -0.076 4.076 11 N -0.252 5.252 12 C -0.083 4.083 13 C -0.183 4.183 14 C 0.211 3.789 15 O -0.387 6.387 16 C -0.575 4.575 17 H 0.078 0.922 18 C -0.131 4.131 19 N -0.534 5.534 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.202 1.202 24 C -0.068 4.068 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.042 0.958 28 H 0.048 0.952 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.050 0.950 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.055 0.945 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.225 0.775 45 H 0.076 0.924 46 H 0.063 0.937 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.031 17.890 -6.861 19.189 hybrid contribution 1.379 -0.841 1.285 2.064 sum 2.411 17.050 -5.577 18.100 Atomic orbital electron populations 1.22425 0.87341 1.02937 0.99957 1.61907 1.07624 1.13030 1.43782 1.22074 0.95620 0.89409 1.00092 1.21583 0.94507 0.99863 0.99506 1.21610 0.99893 0.96187 0.98296 1.21710 0.94051 0.96684 1.02783 1.21640 0.94914 0.94364 0.91101 0.94339 1.21680 1.01111 0.93168 0.98707 1.22227 0.95910 0.91889 0.97592 1.63563 1.55242 1.02375 1.04020 1.22837 0.97459 0.94106 0.93913 1.23248 0.99559 0.95814 0.99696 1.19525 0.80816 0.87811 0.90717 1.86146 1.29517 1.32401 1.90597 1.21517 1.34023 0.95129 1.06877 0.92237 1.24996 0.95149 0.97517 0.95401 1.69733 1.46066 1.11144 1.26429 0.86547 0.80421 0.78644 0.81736 1.20060 1.21146 1.20208 1.22973 0.98804 0.94922 0.90082 0.91805 0.90420 0.95779 0.95243 0.91013 0.91120 0.91855 0.91840 0.92436 0.91160 0.91067 0.90924 0.91285 0.95007 0.91886 0.91887 0.94503 0.90514 0.92766 0.77491 0.92354 0.93705 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 8.98 60.06 0.54 0.76 16 2 N -0.54 -6.09 4.75 -234.93 -1.11 -7.21 16 3 C 0.06 0.54 5.46 -3.84 -0.02 0.51 16 4 C -0.12 -1.03 6.09 -26.66 -0.16 -1.20 16 5 C -0.12 -1.16 6.01 -26.57 -0.16 -1.32 16 6 C -0.11 -1.29 5.08 -26.60 -0.14 -1.42 16 7 C 0.09 1.06 1.93 -67.72 -0.13 0.93 16 8 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 9 C -0.11 -1.50 4.35 -26.73 -0.12 -1.62 16 10 C 0.05 0.85 4.12 -3.82 -0.02 0.83 16 11 N -0.53 -10.43 5.16 -231.25 -1.19 -11.63 16 12 C 0.04 0.89 6.27 -2.84 -0.02 0.87 16 13 C -0.14 -3.37 5.38 -24.91 -0.13 -3.51 16 14 C 0.25 6.35 0.87 -89.64 -0.08 6.27 16 15 O -0.58 -15.41 13.16 -35.23 -0.46 -15.88 16 16 C -0.54 -14.56 8.27 -34.44 -0.28 -14.84 16 17 H 0.06 1.60 7.79 -52.49 -0.41 1.19 16 18 C 0.07 1.92 5.29 -17.82 -0.09 1.82 16 19 N -0.89 -24.06 10.75 55.43 0.60 -23.47 16 20 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 24 C 0.06 1.32 5.86 -2.30 -0.01 1.31 16 25 H 0.06 0.57 8.05 -51.93 -0.42 0.15 16 26 H 0.08 0.85 6.30 -51.93 -0.33 0.53 16 27 H 0.02 0.24 8.14 -51.92 -0.42 -0.18 16 28 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.61 8.05 -51.93 -0.42 0.19 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.81 6.69 -51.93 -0.35 0.47 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 1.04 6.17 -51.93 -0.32 0.72 16 37 H 0.07 1.02 7.27 -51.93 -0.38 0.64 16 38 H 0.03 0.51 6.63 -51.93 -0.34 0.17 16 39 H 0.06 0.97 8.07 -51.93 -0.42 0.55 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.04 0.67 6.90 -51.93 -0.36 0.31 16 42 H 0.08 1.90 7.53 -51.93 -0.39 1.51 16 43 H 0.05 1.30 8.03 -51.93 -0.42 0.88 16 44 H 0.38 10.04 7.56 45.56 0.34 10.38 16 45 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 46 H 0.04 0.97 7.70 -51.93 -0.40 0.57 16 47 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 LS Contribution 351.09 15.07 5.29 5.29 Total: -1.00 -27.58 351.09 -10.69 -38.27 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -7.96 Total: 9.47 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -0.82 Total: -10.60 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: -1.71 Total: -42.30 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.46 Total: -15.88 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -27.58 -10.69 -38.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147334.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.831 kcal (2) G-P(sol) polarization free energy of solvation -27.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds