Wall clock time and date at job start Tue Mar 31 2020 05:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46855 * 111.00136 * 2 1 4 4 C 1.53035 * 109.52417 * 174.15811 * 3 2 1 5 5 C 1.53122 * 109.27857 * 59.17763 * 4 3 2 6 6 C 1.53116 * 109.15356 * 302.34114 * 5 4 3 7 7 C 1.46845 * 111.00084 * 235.79047 * 2 1 3 8 8 H 1.08992 * 109.46487 * 65.83652 * 7 2 1 9 9 C 1.52997 * 109.46310 * 305.85416 * 7 2 1 10 10 C 1.52999 * 109.47231 * 175.00247 * 9 7 2 11 11 N 1.46898 * 109.47050 * 185.32659 * 10 9 7 12 12 C 1.48525 * 111.00698 * 287.39980 * 11 10 9 13 13 C 1.54933 * 103.23223 * 200.27937 * 12 11 10 14 14 C 1.54600 * 102.92022 * 37.41052 * 13 12 11 15 15 O 1.42900 * 110.39394 * 219.08504 * 14 13 12 16 16 C 1.50694 * 110.31033 * 96.96174 * 14 13 12 17 17 H 1.07999 * 120.00030 * 0.34075 * 16 14 13 18 18 C 1.37877 * 120.00324 * 180.33882 * 16 14 13 19 19 N 1.31518 * 119.99668 * 359.61646 * 18 16 14 20 20 Si 1.86798 * 120.00220 * 179.60928 * 18 16 14 21 21 H 1.48498 * 109.47096 * 180.02562 * 20 18 16 22 22 H 1.48500 * 109.47402 * 300.00425 * 20 18 16 23 23 H 1.48502 * 109.46728 * 60.00534 * 20 18 16 24 24 C 1.47903 * 111.00022 * 169.99506 * 11 10 9 25 25 H 1.08994 * 109.46880 * 190.83783 * 1 2 3 26 26 H 1.09006 * 109.47188 * 310.83789 * 1 2 3 27 27 H 1.09002 * 109.46701 * 70.83568 * 1 2 3 28 28 H 1.08991 * 109.46058 * 294.17562 * 3 2 1 29 29 H 1.09002 * 109.45856 * 54.15687 * 3 2 1 30 30 H 1.08998 * 109.50403 * 179.12278 * 4 3 2 31 31 H 1.08999 * 109.50454 * 299.20120 * 4 3 2 32 32 H 1.09003 * 109.52075 * 62.24953 * 5 4 3 33 33 H 1.09000 * 109.52480 * 182.37120 * 5 4 3 34 34 H 1.08996 * 109.50967 * 297.72194 * 6 5 4 35 35 H 1.08998 * 109.49613 * 177.60476 * 6 5 4 36 36 H 1.08994 * 109.46959 * 55.00012 * 9 7 2 37 37 H 1.09006 * 109.47111 * 295.00538 * 9 7 2 38 38 H 1.08998 * 109.47193 * 65.32909 * 10 9 7 39 39 H 1.08992 * 109.47166 * 305.33242 * 10 9 7 40 40 H 1.09009 * 110.66156 * 318.71057 * 12 11 10 41 41 H 1.08998 * 110.66932 * 81.67473 * 12 11 10 42 42 H 1.09004 * 110.72583 * 279.05723 * 13 12 11 43 43 H 1.08999 * 110.72944 * 155.76810 * 13 12 11 44 44 H 0.96704 * 114.00137 * 292.62443 * 15 14 13 45 45 H 0.97000 * 120.00065 * 355.54639 * 19 18 16 46 46 H 1.09005 * 109.91560 * 26.49891 * 24 11 10 47 47 H 1.09000 * 109.92339 * 265.20039 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3342 0.1468 5 6 4.1189 0.5369 -1.0143 6 6 3.5182 -0.8715 -1.0205 7 6 1.9952 -0.7708 -1.1337 8 1 1.7327 -0.2708 -2.0659 9 6 1.3891 -2.1755 -1.1204 10 6 1.8394 -2.9371 -2.3686 11 7 1.1578 -4.2373 -2.4213 12 6 1.7017 -5.1654 -1.3972 13 6 1.2838 -6.5607 -1.9254 14 6 1.4487 -6.4146 -3.4556 15 8 0.3884 -7.0879 -4.1372 16 6 2.7822 -6.9638 -3.8928 17 1 3.4576 -7.3860 -3.1635 18 6 3.1400 -6.9274 -5.2238 19 7 2.3142 -6.4202 -6.1130 20 14 4.7975 -7.5982 -5.7642 21 1 4.9392 -7.4423 -7.2341 22 1 5.8817 -6.8483 -5.0806 23 1 4.8894 -9.0367 -5.4073 24 6 1.3802 -4.8999 -3.7247 25 1 -0.3633 -1.0093 0.1932 26 1 -0.3634 0.6720 0.7775 27 1 -0.3633 0.3374 -0.9708 28 1 1.7325 1.8608 -0.9375 29 1 1.5636 1.9257 0.8331 30 1 3.9099 2.3512 0.1311 31 1 3.7813 0.8574 1.0910 32 1 3.8888 1.0354 -1.9559 33 1 5.1999 0.4724 -0.8910 34 1 3.7812 -1.3835 -0.0949 35 1 3.9101 -1.4303 -1.8702 36 1 0.3017 -2.1019 -1.1122 37 1 1.7240 -2.7073 -0.2297 38 1 2.9174 -3.0933 -2.3298 39 1 1.5879 -2.3587 -3.2575 40 1 2.7873 -5.0842 -1.3423 41 1 1.2528 -4.9697 -0.4234 42 1 0.2466 -6.7758 -1.6681 43 1 1.9468 -7.3343 -1.5381 44 1 0.4091 -8.0502 -4.0435 45 1 1.4285 -6.1311 -5.8430 46 1 2.3190 -4.5574 -4.1600 47 1 0.5528 -4.6797 -4.3993 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592147335.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:02 Heat of formation + Delta-G solvation = -58.455656 kcal Electronic energy + Delta-G solvation = -23577.688336 eV Core-core repulsion = 20373.319394 eV Total energy + Delta-G solvation = -3204.368943 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.53982 -38.39415 -35.35681 -33.72241 -33.00373 -32.18235 -30.15176 -27.97780 -27.07887 -26.45063 -24.43059 -23.39982 -22.59645 -21.08372 -20.07551 -19.74284 -19.43660 -17.46384 -16.13072 -15.64112 -15.46610 -14.86050 -14.49334 -14.36871 -14.29689 -13.85474 -13.63169 -13.62184 -13.16580 -12.87543 -12.56299 -12.43589 -12.16419 -12.01099 -11.86884 -11.78887 -11.46695 -11.17760 -10.93375 -10.82335 -10.77559 -10.59576 -10.50199 -10.37300 -10.24729 -10.15607 -10.10715 -10.02880 -9.09252 -8.55009 -8.39838 -8.12669 -7.64524 -6.34848 -4.21915 3.39221 3.39463 3.59208 3.76467 4.45798 4.55732 4.68197 4.78924 4.82709 4.97010 5.19625 5.27451 5.28537 5.31988 5.36349 5.43861 5.52285 5.53226 5.61391 5.68100 5.69373 5.77605 5.80262 5.82802 5.85631 5.93390 5.97777 6.04323 6.12514 6.14986 6.25994 6.36114 6.44429 6.45568 6.64012 6.72883 6.82479 7.00124 7.02117 7.05510 7.35318 7.51715 7.76398 8.03469 8.32564 8.83967 9.13785 9.63016 11.02442 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022218 B = 0.004058 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.961651 B = 6898.951298 C = 7645.937287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.539 5.539 3 C 0.056 3.944 4 C -0.116 4.116 5 C -0.122 4.122 6 C -0.115 4.115 7 C 0.088 3.912 8 H 0.040 0.960 9 C -0.106 4.106 10 C 0.050 3.950 11 N -0.520 5.520 12 C 0.046 3.954 13 C -0.142 4.142 14 C 0.230 3.770 15 O -0.578 6.578 16 C -0.639 4.639 17 H 0.050 0.950 18 C 0.035 3.965 19 N -0.893 5.893 20 Si 1.062 2.938 21 H -0.282 1.282 22 H -0.289 1.289 23 H -0.287 1.287 24 C 0.063 3.937 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.025 0.975 28 H 0.030 0.970 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.037 0.963 39 H 0.064 0.936 40 H 0.041 0.959 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.360 0.640 45 H 0.289 0.711 46 H 0.053 0.947 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.378 13.150 11.598 17.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.264 5.264 3 C -0.072 4.072 4 C -0.154 4.154 5 C -0.160 4.160 6 C -0.152 4.152 7 C -0.020 4.020 8 H 0.057 0.943 9 C -0.145 4.145 10 C -0.080 4.080 11 N -0.245 5.245 12 C -0.081 4.081 13 C -0.181 4.181 14 C 0.191 3.809 15 O -0.382 6.382 16 C -0.677 4.677 17 H 0.069 0.931 18 C -0.174 4.174 19 N -0.528 5.528 20 Si 0.891 3.109 21 H -0.207 1.207 22 H -0.216 1.216 23 H -0.214 1.214 24 C -0.065 4.065 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.043 0.957 28 H 0.048 0.952 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.055 0.945 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.205 0.795 45 H 0.102 0.898 46 H 0.072 0.928 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.783 13.488 10.620 17.185 hybrid contribution -0.164 -0.065 0.635 0.659 sum 0.619 13.423 11.255 17.528 Atomic orbital electron populations 1.22409 0.87416 1.02792 0.99959 1.61919 1.07560 1.13070 1.43803 1.22083 0.95664 0.89369 1.00104 1.21584 0.94475 0.99880 0.99486 1.21595 0.99932 0.96156 0.98314 1.21695 0.93981 0.96760 1.02813 1.21642 0.94977 0.94280 0.91120 0.94255 1.21626 1.01076 0.93324 0.98428 1.22216 0.96394 0.91765 0.97591 1.64752 1.52705 1.02026 1.04985 1.22997 0.97260 0.92824 0.95057 1.23123 0.99779 0.95715 0.99449 1.19650 0.86295 0.88905 0.86058 1.86361 1.52774 1.22075 1.77003 1.22416 1.02763 1.46660 0.95888 0.93143 1.25741 1.04278 0.94405 0.92947 1.70631 1.09455 1.35462 1.37262 0.83657 0.74707 0.76226 0.76330 1.20704 1.21558 1.21366 1.22802 0.99766 0.94583 0.89309 0.90623 0.91854 0.95664 0.95202 0.91013 0.91833 0.91144 0.92393 0.91805 0.91086 0.91067 0.91010 0.91413 0.94522 0.91713 0.94099 0.91753 0.92398 0.91978 0.79481 0.89843 0.92834 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 8.89 60.06 0.53 0.77 16 2 N -0.54 -6.23 4.75 -234.93 -1.11 -7.35 16 3 C 0.06 0.55 5.46 -3.83 -0.02 0.53 16 4 C -0.12 -1.07 6.09 -26.65 -0.16 -1.24 16 5 C -0.12 -1.24 6.00 -26.61 -0.16 -1.40 16 6 C -0.11 -1.37 5.11 -26.65 -0.14 -1.51 16 7 C 0.09 1.11 1.90 -67.72 -0.13 0.98 16 8 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 9 C -0.11 -1.51 4.45 -26.73 -0.12 -1.63 16 10 C 0.05 0.85 4.32 -3.83 -0.02 0.83 16 11 N -0.52 -10.53 5.24 -230.46 -1.21 -11.74 16 12 C 0.05 0.90 5.93 -1.90 -0.01 0.89 16 13 C -0.14 -3.04 6.35 -24.87 -0.16 -3.20 16 14 C 0.23 5.74 0.85 -90.41 -0.08 5.66 16 15 O -0.58 -14.65 11.44 -35.23 -0.40 -15.05 16 16 C -0.64 -17.38 7.99 -34.44 -0.28 -17.66 16 17 H 0.05 1.37 7.53 -52.49 -0.40 0.98 16 18 C 0.04 0.98 5.07 -17.82 -0.09 0.89 16 19 N -0.89 -26.44 13.24 55.43 0.73 -25.70 16 20 Si 1.06 24.58 29.90 -169.99 -5.08 19.49 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 24 C 0.06 1.52 4.76 -2.75 -0.01 1.51 16 25 H 0.08 0.83 6.52 -51.93 -0.34 0.49 16 26 H 0.06 0.57 7.97 -51.93 -0.41 0.15 16 27 H 0.02 0.27 8.12 -51.93 -0.42 -0.16 16 28 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.63 8.01 -51.93 -0.42 0.21 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.90 6.73 -51.93 -0.35 0.55 16 36 H 0.07 1.04 6.18 -51.93 -0.32 0.72 16 37 H 0.07 0.99 7.60 -51.93 -0.39 0.60 16 38 H 0.04 0.65 6.54 -51.93 -0.34 0.31 16 39 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 40 H 0.04 0.81 7.81 -51.92 -0.41 0.41 16 41 H 0.06 1.11 7.94 -51.93 -0.41 0.69 16 42 H 0.06 1.19 8.09 -51.93 -0.42 0.77 16 43 H 0.06 1.30 7.66 -51.93 -0.40 0.90 16 44 H 0.36 8.18 9.04 45.56 0.41 8.59 16 45 H 0.29 8.67 5.35 -40.82 -0.22 8.45 16 46 H 0.05 1.40 7.03 -51.93 -0.36 1.04 16 47 H 0.06 1.60 7.77 -51.93 -0.40 1.20 16 LS Contribution 350.01 15.07 5.27 5.27 Total: -1.00 -29.70 350.01 -10.41 -40.11 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -7.77 Total: 9.53 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -0.83 Total: -14.57 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: -1.59 Total: -44.79 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.40 Total: -15.05 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -5.08 Total: 19.49 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.70 -10.41 -40.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147335.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.344 kcal (2) G-P(sol) polarization free energy of solvation -29.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds