Wall clock time and date at job start Tue Mar 31 2020 05:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46842 * 110.99811 * 2 1 4 4 C 1.53037 * 109.52643 * 185.84079 * 3 2 1 5 5 C 1.53124 * 109.27799 * 300.82349 * 4 3 2 6 6 C 1.53127 * 109.15932 * 57.65110 * 5 4 3 7 7 C 1.46846 * 111.00186 * 124.21292 * 2 1 3 8 8 H 1.09001 * 109.45927 * 294.17359 * 7 2 1 9 9 C 1.52999 * 109.46278 * 54.14547 * 7 2 1 10 10 C 1.53005 * 109.46870 * 185.33751 * 9 7 2 11 11 N 1.46901 * 109.46890 * 184.46021 * 10 9 7 12 12 C 1.47906 * 111.00035 * 65.90099 * 11 10 9 13 13 C 1.53985 * 107.05891 * 214.15533 * 12 11 10 14 14 C 1.54596 * 105.14206 * 1.22495 * 13 12 11 15 15 O 1.42902 * 110.72436 * 263.60089 * 14 13 12 16 16 C 1.50702 * 110.72306 * 140.49230 * 14 13 12 17 17 H 1.07997 * 119.99757 * 241.45367 * 16 14 13 18 18 C 1.37878 * 119.99746 * 61.45682 * 16 14 13 19 19 N 1.31506 * 120.00413 * 0.02562 * 18 16 14 20 20 Si 1.86805 * 119.99657 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47276 * 359.97438 * 20 18 16 22 22 H 1.48490 * 109.47052 * 120.00214 * 20 18 16 23 23 H 1.48506 * 109.46861 * 239.99946 * 20 18 16 24 24 C 1.48529 * 111.00077 * 308.50621 * 11 10 9 25 25 H 1.09000 * 109.46975 * 297.35519 * 1 2 3 26 26 H 1.08998 * 109.47833 * 57.35942 * 1 2 3 27 27 H 1.09002 * 109.47122 * 177.36000 * 1 2 3 28 28 H 1.09001 * 109.46393 * 305.86031 * 3 2 1 29 29 H 1.08997 * 109.46325 * 65.82409 * 3 2 1 30 30 H 1.08993 * 109.50823 * 180.88270 * 4 3 2 31 31 H 1.09002 * 109.49880 * 60.76111 * 4 3 2 32 32 H 1.08996 * 109.52229 * 297.74704 * 5 4 3 33 33 H 1.09000 * 109.52150 * 177.55567 * 5 4 3 34 34 H 1.08996 * 109.50380 * 62.28894 * 6 5 4 35 35 H 1.09002 * 109.50181 * 182.36412 * 6 5 4 36 36 H 1.09002 * 109.47262 * 305.33041 * 9 7 2 37 37 H 1.08996 * 109.47034 * 65.33465 * 9 7 2 38 38 H 1.08996 * 109.46756 * 304.45989 * 10 9 7 39 39 H 1.08992 * 109.47449 * 64.46182 * 10 9 7 40 40 H 1.09002 * 109.91747 * 333.51456 * 12 11 10 41 41 H 1.09002 * 109.91745 * 94.80151 * 12 11 10 42 42 H 1.09001 * 110.30942 * 120.14376 * 13 12 11 43 43 H 1.09001 * 110.30808 * 242.20701 * 13 12 11 44 44 H 0.96697 * 113.99459 * 298.54508 * 15 14 13 45 45 H 0.97001 * 120.00569 * 180.02562 * 19 18 16 46 46 H 1.09002 * 110.66886 * 278.15342 * 24 11 10 47 47 H 1.09001 * 110.66614 * 41.28638 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5180 1.3343 -0.1468 5 6 4.1188 0.5370 1.0143 6 6 3.5181 -0.8715 1.0207 7 6 1.9953 -0.7708 1.1337 8 1 1.7325 -0.2709 2.0659 9 6 1.3892 -2.1756 1.1203 10 6 1.8327 -2.9343 2.3727 11 7 1.3392 -4.3165 2.3083 12 6 1.9797 -5.0568 1.1995 13 6 0.9296 -6.0368 0.6446 14 6 -0.3437 -5.7818 1.4835 15 8 -0.4389 -6.7208 2.5564 16 6 -1.5745 -5.8400 0.6157 17 1 -2.2059 -4.9696 0.5153 18 6 -1.8944 -7.0044 -0.0498 19 7 -1.1258 -8.0643 0.0730 20 14 -3.4204 -7.0766 -1.1248 21 1 -4.1103 -5.7620 -1.0940 22 1 -3.0279 -7.3977 -2.5204 23 1 -4.3364 -8.1280 -0.6139 24 6 -0.1189 -4.3486 2.0275 25 1 -0.3633 0.4722 0.9128 26 1 -0.3635 0.5543 -0.8653 27 1 -0.3633 -1.0266 -0.0473 28 1 1.5633 1.9257 -0.8329 29 1 1.7324 1.8608 0.9376 30 1 3.9098 2.3513 -0.1310 31 1 3.7812 0.8569 -1.0907 32 1 3.8887 1.0354 1.9559 33 1 5.1998 0.4715 0.8904 34 1 3.7814 -1.3836 0.0953 35 1 3.9105 -1.4306 1.8702 36 1 0.3017 -2.1020 1.1061 37 1 1.7288 -2.7093 0.2327 38 1 2.9212 -2.9393 2.4280 39 1 1.4261 -2.4444 3.2574 40 1 2.2884 -4.3618 0.4185 41 1 2.8429 -5.6088 1.5713 42 1 0.7371 -5.8290 -0.4080 43 1 1.2679 -7.0652 0.7708 44 1 -0.5025 -7.6418 2.2685 45 1 -1.3506 -8.8834 -0.3955 46 1 -0.6904 -4.1903 2.9421 47 1 -0.3822 -3.6056 1.2746 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592147336.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:04 Heat of formation + Delta-G solvation = -46.668150 kcal Electronic energy + Delta-G solvation = -23862.787911 eV Core-core repulsion = 20658.930113 eV Total energy + Delta-G solvation = -3203.857798 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.65834 -38.27638 -35.15470 -33.67712 -32.65160 -32.06819 -29.88948 -27.99364 -27.40623 -26.40210 -24.90202 -23.36494 -22.57793 -21.27116 -19.86392 -19.59177 -19.14703 -17.02820 -15.99398 -15.50383 -15.08230 -14.87043 -14.73280 -14.50405 -14.29019 -14.15910 -13.73752 -13.41130 -13.06552 -12.72703 -12.63802 -12.31035 -12.08653 -11.88728 -11.73679 -11.45371 -11.31762 -11.23872 -11.10810 -10.87121 -10.80095 -10.59763 -10.55953 -10.38332 -10.31656 -10.27205 -9.90715 -9.66882 -9.09125 -8.55355 -8.34130 -8.03760 -7.57136 -6.16976 -4.24985 3.23043 3.31767 3.35589 3.83636 4.32442 4.64957 4.67649 4.78129 4.85348 4.97808 5.11377 5.21589 5.28351 5.31142 5.41629 5.45706 5.49256 5.61933 5.65737 5.69316 5.78545 5.83242 5.86718 5.87874 5.92941 6.00475 6.01377 6.04369 6.14446 6.26790 6.27615 6.39030 6.48996 6.61867 6.69734 6.96520 7.05408 7.10578 7.12902 7.46460 7.57083 7.62909 7.80499 7.87450 8.24422 8.77708 9.43960 9.61182 10.90049 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022441 B = 0.004358 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.396154 B = 6422.752330 C = 7162.580675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.539 5.539 3 C 0.056 3.944 4 C -0.117 4.117 5 C -0.122 4.122 6 C -0.114 4.114 7 C 0.092 3.908 8 H 0.037 0.963 9 C -0.158 4.158 10 C 0.047 3.953 11 N -0.511 5.511 12 C 0.031 3.969 13 C -0.128 4.128 14 C 0.256 3.744 15 O -0.581 6.581 16 C -0.536 4.536 17 H 0.060 0.940 18 C 0.071 3.929 19 N -0.894 5.894 20 Si 0.897 3.103 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.282 1.282 24 C 0.046 3.954 25 H 0.023 0.977 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.029 0.971 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.035 0.965 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.065 0.935 44 H 0.376 0.624 45 H 0.265 0.735 46 H 0.068 0.932 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.231 15.578 -0.056 17.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.263 5.263 3 C -0.072 4.072 4 C -0.155 4.155 5 C -0.159 4.159 6 C -0.151 4.151 7 C -0.016 4.016 8 H 0.055 0.945 9 C -0.197 4.197 10 C -0.082 4.082 11 N -0.234 5.234 12 C -0.096 4.096 13 C -0.167 4.167 14 C 0.215 3.785 15 O -0.389 6.389 16 C -0.574 4.574 17 H 0.078 0.922 18 C -0.131 4.131 19 N -0.534 5.534 20 Si 0.724 3.276 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.208 1.208 24 C -0.081 4.081 25 H 0.041 0.959 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.047 0.953 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.053 0.947 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.225 0.775 45 H 0.075 0.925 46 H 0.087 0.913 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.569 15.473 0.334 17.690 hybrid contribution -1.298 0.228 -1.124 1.732 sum 7.271 15.701 -0.790 17.320 Atomic orbital electron populations 1.22452 0.87257 1.03066 1.00066 1.61910 1.07679 1.12955 1.43790 1.22070 0.95571 0.89498 1.00075 1.21585 0.94554 0.99822 0.99502 1.21594 0.99816 0.96206 0.98303 1.21691 0.94084 0.96658 1.02696 1.21576 0.94830 0.94179 0.91064 0.94468 1.22488 1.01688 0.94647 1.00917 1.22312 1.00012 0.89664 0.96250 1.64979 1.05471 1.10528 1.42374 1.22959 0.98374 0.96508 0.91809 1.22905 0.95885 0.98011 0.99875 1.19353 0.91269 0.84427 0.83411 1.86145 1.96688 1.20160 1.35870 1.21645 1.09798 0.98246 1.27748 0.92202 1.24986 0.96639 0.95499 0.95964 1.69743 1.37781 1.02345 1.43490 0.86466 0.82892 0.78198 0.80003 1.19722 1.20927 1.20833 1.23292 0.87138 0.98307 0.99348 0.95888 0.91640 0.90269 0.91026 0.95298 0.91869 0.91110 0.92463 0.91893 0.91090 0.91156 0.90672 0.90581 0.91324 0.91568 0.94688 0.92147 0.92235 0.91669 0.77484 0.92479 0.91342 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.11 60.06 0.55 0.78 16 2 N -0.54 -6.67 4.75 -234.94 -1.11 -7.79 16 3 C 0.06 0.58 5.46 -3.84 -0.02 0.56 16 4 C -0.12 -1.08 6.09 -26.65 -0.16 -1.24 16 5 C -0.12 -1.15 6.00 -26.60 -0.16 -1.31 16 6 C -0.11 -1.27 5.12 -26.65 -0.14 -1.41 16 7 C 0.09 1.15 1.91 -67.72 -0.13 1.02 16 8 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 9 C -0.16 -2.33 3.58 -26.73 -0.10 -2.42 16 10 C 0.05 0.73 5.32 -3.82 -0.02 0.71 16 11 N -0.51 -10.07 5.54 -230.45 -1.28 -11.34 16 12 C 0.03 0.62 6.46 -2.76 -0.02 0.60 16 13 C -0.13 -3.00 5.26 -25.38 -0.13 -3.14 16 14 C 0.26 6.44 0.95 -89.91 -0.09 6.35 16 15 O -0.58 -15.60 13.09 -35.23 -0.46 -16.07 16 16 C -0.54 -14.45 8.15 -34.44 -0.28 -14.73 16 17 H 0.06 1.60 7.78 -52.49 -0.41 1.20 16 18 C 0.07 1.90 5.28 -17.82 -0.09 1.81 16 19 N -0.89 -24.12 11.00 55.43 0.61 -23.51 16 20 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C 0.05 1.01 5.45 -1.90 -0.01 1.00 16 25 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 27 H 0.08 1.06 6.00 -51.93 -0.31 0.75 16 28 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 29 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.76 6.52 -51.93 -0.34 0.42 16 36 H 0.07 1.19 4.04 -51.93 -0.21 0.98 16 37 H 0.08 1.24 6.18 -51.93 -0.32 0.92 16 38 H 0.07 0.98 6.38 -51.93 -0.33 0.65 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.03 0.64 5.85 -51.93 -0.30 0.34 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.06 1.46 7.84 -51.93 -0.41 1.05 16 43 H 0.06 1.61 7.98 -51.93 -0.41 1.20 16 44 H 0.38 10.16 7.46 45.56 0.34 10.50 16 45 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 46 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 47 H 0.05 1.11 5.36 -51.93 -0.28 0.83 16 LS Contribution 344.86 15.07 5.20 5.20 Total: -1.00 -27.76 344.86 -10.48 -38.24 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -7.61 Total: 10.93 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -0.80 Total: -11.40 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: -1.78 Total: -42.63 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.46 Total: -16.07 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.76 -10.48 -38.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147336.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.427 kcal (2) G-P(sol) polarization free energy of solvation -27.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds