Wall clock time and date at job start Tue Mar 31 2020 05:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47450 * 2 1 4 4 C 1.53002 * 109.47000 * 294.99022 * 3 2 1 5 5 C 1.53000 * 109.47141 * 292.80896 * 4 3 2 6 6 C 1.52998 * 109.47229 * 54.98512 * 3 2 1 7 7 N 1.46905 * 109.46969 * 76.61905 * 6 3 2 8 8 C 1.46890 * 111.00355 * 148.59414 * 7 6 3 9 9 C 1.50697 * 109.47557 * 204.14428 * 8 7 6 10 10 H 1.07999 * 119.99685 * 4.23947 * 9 8 7 11 11 C 1.37877 * 120.00354 * 184.23935 * 9 8 7 12 12 N 1.31512 * 119.99863 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00003 * 179.97438 * 11 9 8 14 14 H 1.48487 * 109.47319 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46587 * 120.00206 * 13 11 9 16 16 H 1.48499 * 109.47177 * 239.99875 * 13 11 9 17 17 C 1.46899 * 110.99943 * 272.55371 * 7 6 3 18 18 C 1.53000 * 109.47240 * 177.34890 * 17 7 6 19 19 H 1.08999 * 110.01184 * 57.65510 * 18 17 7 20 20 C 1.54317 * 109.88752 * 178.77019 * 18 17 7 21 21 C 1.55436 * 103.04315 * 141.68777 * 20 18 17 22 22 C 1.54899 * 101.52256 * 324.36550 * 21 20 18 23 23 N 1.47445 * 109.88766 * 296.53913 * 18 17 7 24 24 C 1.46905 * 110.99925 * 3.85162 * 23 18 17 25 25 H 1.09000 * 109.47619 * 182.84012 * 1 2 3 26 26 H 1.09001 * 109.46535 * 302.84534 * 1 2 3 27 27 H 1.09004 * 109.46995 * 62.83565 * 1 2 3 28 28 H 1.09006 * 109.46584 * 239.99986 * 2 1 3 29 29 H 1.09002 * 109.46722 * 120.00147 * 2 1 3 30 30 H 1.08998 * 109.47423 * 174.98801 * 3 2 1 31 31 H 1.08993 * 109.47282 * 52.81127 * 4 3 2 32 32 H 1.09002 * 109.46847 * 172.81633 * 4 3 2 33 33 H 1.08999 * 109.47306 * 185.51934 * 5 4 3 34 34 H 1.09003 * 109.47319 * 305.52679 * 5 4 3 35 35 H 1.09002 * 109.46862 * 65.52451 * 5 4 3 36 36 H 1.08997 * 109.47653 * 316.62358 * 6 3 2 37 37 H 1.08998 * 109.47471 * 196.61207 * 6 3 2 38 38 H 1.09006 * 109.47115 * 324.14365 * 8 7 6 39 39 H 1.09005 * 109.47209 * 84.14262 * 8 7 6 40 40 H 0.97007 * 120.00223 * 180.02562 * 12 11 9 41 41 H 1.09001 * 109.47534 * 57.34435 * 17 7 6 42 42 H 1.08999 * 109.46893 * 297.34090 * 17 7 6 43 43 H 1.08999 * 110.70621 * 260.06283 * 20 18 17 44 44 H 1.08991 * 110.70673 * 23.13327 * 20 18 17 45 45 H 1.09003 * 111.10287 * 206.29101 * 21 20 18 46 46 H 1.09001 * 110.99905 * 82.39059 * 21 20 18 47 47 H 1.09006 * 110.37342 * 278.18388 * 22 21 20 48 48 H 1.09001 * 110.37995 * 155.95186 * 22 21 20 49 49 H 1.09000 * 109.47048 * 307.93045 * 24 23 18 50 50 H 1.09001 * 109.46839 * 67.92233 * 24 23 18 51 51 H 1.09000 * 109.47140 * 187.92942 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.6356 2.1264 -1.3075 5 6 2.3870 1.4818 -2.4740 6 6 1.4298 2.1992 1.1814 7 7 2.1164 1.8090 2.4201 8 6 2.1455 2.9215 3.3788 9 6 3.3000 2.7357 4.3293 10 1 3.9878 1.9149 4.1894 11 6 3.4784 3.6136 5.3774 12 7 2.6406 4.6128 5.5480 13 14 4.9092 3.3827 6.5559 14 1 5.6987 2.1928 6.1489 15 1 5.7772 4.5872 6.5225 16 1 4.3895 3.1852 7.9329 17 6 1.4942 0.6182 3.0142 18 6 2.2750 0.2042 4.2631 19 1 2.3035 1.0286 4.9756 20 6 1.6111 -1.0282 4.9126 21 6 2.8270 -1.8721 5.3877 22 6 3.8514 -1.6021 4.2577 23 7 3.6476 -0.1846 3.8906 24 6 3.8838 0.0270 2.4562 25 1 -0.3634 -1.0264 0.0509 26 1 -0.3632 0.5574 0.8634 27 1 -0.3633 0.4692 -0.9144 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 3.1264 1.4437 0.0898 31 1 0.5623 2.0132 -1.4598 32 1 1.8856 3.1861 -1.2556 33 1 2.1745 2.0312 -3.3911 34 1 3.4583 1.5077 -2.2748 35 1 2.0634 0.4471 -2.5871 36 1 0.3705 1.9554 1.2610 37 1 1.5451 3.2717 1.0246 38 1 2.2656 3.8619 2.8407 39 1 1.2117 2.9413 3.9409 40 1 2.7662 5.2307 6.2852 41 1 1.5065 -0.1973 2.2910 42 1 0.4640 0.8451 3.2885 43 1 0.9936 -0.7314 5.7603 44 1 1.0198 -1.5781 4.1805 45 1 2.5734 -2.9309 5.4402 46 1 3.2003 -1.5136 6.3470 47 1 3.6521 -2.2480 3.4025 48 1 4.8672 -1.7577 4.6211 49 1 3.0961 -0.4613 1.8824 50 1 3.8805 1.0956 2.2412 51 1 4.8497 -0.3962 2.1807 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593016987.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:32 Heat of formation + Delta-G solvation = 28.341842 kcal Electronic energy + Delta-G solvation = -25299.760375 eV Core-core repulsion = 22234.988349 eV Total energy + Delta-G solvation = -3064.772026 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.57604 -37.57372 -35.04970 -32.35276 -31.32773 -31.13144 -29.76466 -27.94902 -26.48491 -24.95242 -24.38665 -23.14036 -22.66035 -20.93297 -20.24297 -18.91677 -18.48946 -16.39845 -16.15259 -15.44242 -15.31513 -14.55685 -14.32383 -14.11088 -13.73029 -13.43180 -13.28778 -13.04952 -12.86324 -12.55299 -12.21818 -12.09011 -11.99077 -11.68023 -11.39501 -11.32252 -11.29979 -10.97260 -10.86703 -10.77910 -10.66292 -10.46206 -10.42554 -10.37074 -10.21428 -10.12722 -10.10182 -10.00760 -9.74276 -9.18927 -8.94728 -8.23086 -7.26643 -6.97258 -5.85595 -3.80017 3.43474 3.51645 3.63279 4.56278 4.72295 4.90868 5.06863 5.12577 5.18644 5.25032 5.29007 5.42119 5.47278 5.48705 5.52482 5.55467 5.72209 5.78577 5.87756 5.90066 5.98791 5.99804 6.02119 6.06027 6.08068 6.18581 6.19915 6.24239 6.26986 6.30715 6.34319 6.38925 6.41548 6.46419 6.50418 6.57988 6.62651 6.77540 6.85302 7.26871 7.32082 7.40633 7.51542 7.96179 8.01047 8.15998 8.22482 8.28196 8.67948 9.39732 9.80901 11.25130 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.014582 B = 0.006825 C = 0.005415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.743719 B = 4101.445622 C = 5169.523736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.131 4.131 3 C -0.080 4.080 4 C -0.121 4.121 5 C -0.149 4.149 6 C 0.048 3.952 7 N -0.522 5.522 8 C 0.186 3.814 9 C -0.496 4.496 10 H 0.103 0.897 11 C 0.049 3.951 12 N -0.908 5.908 13 Si 0.890 3.110 14 H -0.265 1.265 15 H -0.291 1.291 16 H -0.291 1.291 17 C 0.043 3.957 18 C 0.069 3.931 19 H 0.131 0.869 20 C -0.142 4.142 21 C -0.127 4.127 22 C 0.036 3.964 23 N -0.502 5.502 24 C 0.005 3.995 25 H 0.044 0.956 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.046 0.954 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.033 0.967 37 H 0.063 0.937 38 H 0.021 0.979 39 H -0.007 1.007 40 H 0.255 0.745 41 H 0.070 0.930 42 H 0.019 0.981 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.061 0.939 46 H 0.072 0.928 47 H 0.031 0.969 48 H 0.067 0.933 49 H 0.023 0.977 50 H 0.129 0.871 51 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.000 -10.812 -9.648 14.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.167 4.167 3 C -0.099 4.099 4 C -0.159 4.159 5 C -0.207 4.207 6 C -0.081 4.081 7 N -0.246 5.246 8 C 0.061 3.939 9 C -0.534 4.534 10 H 0.121 0.879 11 C -0.150 4.150 12 N -0.550 5.550 13 Si 0.718 3.282 14 H -0.189 1.189 15 H -0.218 1.218 16 H -0.217 1.217 17 C -0.085 4.085 18 C -0.038 4.038 19 H 0.148 0.852 20 C -0.181 4.181 21 C -0.165 4.165 22 C -0.092 4.092 23 N -0.225 5.225 24 C -0.142 4.142 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.082 0.918 38 H 0.039 0.961 39 H 0.011 0.989 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.037 0.963 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.091 0.909 47 H 0.049 0.951 48 H 0.085 0.915 49 H 0.041 0.959 50 H 0.147 0.853 51 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -2.183 -10.450 -9.395 14.221 hybrid contribution -0.808 -0.311 0.485 0.993 sum -2.991 -10.761 -8.909 14.287 Atomic orbital electron populations 1.21950 0.96802 1.00761 1.01919 1.21910 0.95460 0.97494 1.01883 1.21202 1.01243 0.94093 0.93373 1.21604 0.99941 0.99704 0.94660 1.21783 1.00619 1.00444 0.97812 1.22368 0.95643 0.98871 0.91188 1.62499 1.49848 1.06740 1.05514 1.19917 0.96758 0.87340 0.89897 1.21892 1.10851 1.12097 1.08600 0.87893 1.24991 0.96401 0.95432 0.98223 1.70001 1.37306 1.16159 1.31489 0.86534 0.82957 0.78066 0.80599 1.18892 1.21766 1.21718 1.22706 0.95049 0.94333 0.96431 1.22970 0.85897 0.97439 0.97524 0.85189 1.22957 0.97529 0.97435 1.00202 1.22677 0.95883 0.98685 0.99250 1.23086 0.99000 0.90825 0.96285 1.63660 1.25173 1.15598 1.18107 1.23349 0.96777 1.07039 0.87063 0.93692 0.92132 0.92940 0.92735 0.90418 0.90178 0.92313 0.92177 0.93453 0.92726 0.92970 0.94852 0.91837 0.96057 0.98921 0.93507 0.91184 0.96259 0.91487 0.92722 0.92067 0.90942 0.95113 0.91460 0.95881 0.85298 0.95454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.10 37.16 0.34 -1.54 16 2 C -0.13 -1.66 4.89 -26.73 -0.13 -1.79 16 3 C -0.08 -1.11 2.17 -90.62 -0.20 -1.31 16 4 C -0.12 -1.46 5.27 -26.73 -0.14 -1.60 16 5 C -0.15 -1.58 9.58 37.16 0.36 -1.22 16 6 C 0.05 0.80 4.66 -3.82 -0.02 0.78 16 7 N -0.52 -10.18 1.24 -236.08 -0.29 -10.47 16 8 C 0.19 4.57 4.55 -4.98 -0.02 4.55 16 9 C -0.50 -13.14 6.13 -34.44 -0.21 -13.35 16 10 H 0.10 2.71 4.50 -52.49 -0.24 2.47 16 11 C 0.05 1.37 5.46 -17.82 -0.10 1.27 16 12 N -0.91 -26.85 13.29 55.43 0.74 -26.12 16 13 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 14 H -0.26 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 16 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 17 C 0.04 0.79 2.91 -3.82 -0.01 0.78 16 18 C 0.07 1.33 2.61 -66.72 -0.17 1.16 16 19 H 0.13 3.07 5.31 -51.93 -0.28 2.80 16 20 C -0.14 -2.27 6.48 -24.75 -0.16 -2.43 16 21 C -0.13 -1.87 7.10 -24.44 -0.17 -2.04 16 22 C 0.04 0.58 6.69 -2.30 -0.02 0.56 16 23 N -0.50 -9.56 3.91 -231.56 -0.91 -10.46 16 24 C 0.01 0.10 7.44 60.07 0.45 0.54 16 25 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.80 5.60 -51.93 -0.29 0.51 16 27 H 0.05 0.58 6.55 -51.93 -0.34 0.24 16 28 H 0.05 0.64 6.55 -51.93 -0.34 0.30 16 29 H 0.08 1.10 3.07 -51.93 -0.16 0.94 16 30 H 0.08 1.23 7.63 -51.93 -0.40 0.83 16 31 H 0.06 0.68 6.32 -51.93 -0.33 0.35 16 32 H 0.06 0.75 8.01 -51.93 -0.42 0.34 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.53 6.79 -51.93 -0.35 0.17 16 36 H 0.03 0.55 5.12 -51.93 -0.27 0.28 16 37 H 0.06 1.14 7.12 -51.93 -0.37 0.77 16 38 H 0.02 0.57 7.40 -51.93 -0.38 0.19 16 39 H -0.01 -0.19 7.90 -51.93 -0.41 -0.60 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.07 1.15 3.55 -51.93 -0.18 0.97 16 42 H 0.02 0.37 8.06 -51.93 -0.42 -0.05 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.05 0.80 7.85 -51.93 -0.41 0.39 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.03 0.46 7.81 -51.93 -0.41 0.05 16 48 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 49 H 0.02 0.38 3.65 -51.93 -0.19 0.19 16 50 H 0.13 2.63 4.61 -51.93 -0.24 2.39 16 51 H 0.03 0.46 8.10 -51.93 -0.42 0.04 16 LS Contribution 351.13 15.07 5.29 5.29 Total: -1.00 -27.80 351.13 -9.33 -37.13 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -8.92 Total: 3.23 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -0.21 Total: -15.65 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: -0.46 Total: -47.05 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -27.80 -9.33 -37.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593016987.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.473 kcal (2) G-P(sol) polarization free energy of solvation -27.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds