Wall clock time and date at job start Tue Mar 31 2020 05:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 110.99636 * 2 1 4 4 C 1.53008 * 109.46928 * 293.95218 * 3 2 1 5 5 N 1.46899 * 109.46859 * 180.02562 * 4 3 2 6 6 C 1.46842 * 111.00465 * 45.78864 * 5 4 3 7 7 C 1.53034 * 109.52627 * 185.84208 * 6 5 4 8 8 C 1.53123 * 109.27487 * 300.81883 * 7 6 5 9 9 C 1.53117 * 109.16159 * 57.65341 * 8 7 6 10 10 C 1.46850 * 110.99712 * 169.99922 * 5 4 3 11 11 C 1.46896 * 110.99998 * 123.94888 * 2 1 3 12 12 C 1.53008 * 109.47013 * 85.43078 * 11 2 1 13 13 C 1.52998 * 109.47102 * 300.34894 * 12 11 2 14 14 C 1.53000 * 109.46616 * 60.34992 * 12 11 2 15 15 C 1.52995 * 109.46877 * 180.34570 * 12 11 2 16 16 C 1.50704 * 109.46977 * 180.02562 * 15 12 11 17 17 H 1.08000 * 119.99841 * 0.02562 * 16 15 12 18 18 C 1.37876 * 119.99973 * 179.97438 * 16 15 12 19 19 N 1.31505 * 120.00155 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99604 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47016 * 90.00115 * 20 18 16 22 22 H 1.48503 * 109.46718 * 210.00302 * 20 18 16 23 23 H 1.48500 * 109.47308 * 329.99947 * 20 18 16 24 24 H 1.09004 * 109.47463 * 67.55752 * 1 2 3 25 25 H 1.09002 * 109.47105 * 187.54801 * 1 2 3 26 26 H 1.08999 * 109.47668 * 307.55362 * 1 2 3 27 27 H 1.08994 * 109.47108 * 173.95580 * 3 2 1 28 28 H 1.08997 * 109.47402 * 53.94968 * 3 2 1 29 29 H 1.08994 * 109.46931 * 60.00253 * 4 3 2 30 30 H 1.09004 * 109.46678 * 300.00400 * 4 3 2 31 31 H 1.09001 * 109.45986 * 65.82058 * 6 5 4 32 32 H 1.09007 * 109.46289 * 305.85663 * 6 5 4 33 33 H 1.08994 * 109.50741 * 180.87983 * 7 6 5 34 34 H 1.09004 * 109.50447 * 60.75596 * 7 6 5 35 35 H 1.09001 * 109.51925 * 177.55944 * 8 7 6 36 36 H 1.08994 * 109.52221 * 297.74613 * 8 7 6 37 37 H 1.09012 * 109.50218 * 62.28525 * 9 8 7 38 38 H 1.09001 * 109.50363 * 182.40388 * 9 8 7 39 39 H 1.09003 * 109.46012 * 54.14430 * 10 5 4 40 40 H 1.08997 * 109.46184 * 294.17101 * 10 5 4 41 41 H 1.08994 * 109.47412 * 205.43120 * 11 2 1 42 42 H 1.09000 * 109.47094 * 325.43836 * 11 2 1 43 43 H 1.09004 * 109.46823 * 68.65446 * 13 12 11 44 44 H 1.08998 * 109.47040 * 188.65196 * 13 12 11 45 45 H 1.08996 * 109.47362 * 308.65040 * 13 12 11 46 46 H 1.08996 * 109.47276 * 59.99747 * 14 12 11 47 47 H 1.09003 * 109.46882 * 180.02562 * 14 12 11 48 48 H 1.09002 * 109.46906 * 299.99601 * 14 12 11 49 49 H 1.09000 * 109.47541 * 299.99726 * 15 12 11 50 50 H 1.08998 * 109.47630 * 60.00655 * 15 12 11 51 51 H 0.97001 * 120.00124 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0575 -1.3184 5 7 2.1582 3.4287 -1.3186 6 6 3.5476 3.4588 -0.8442 7 6 4.0141 4.9110 -0.7194 8 6 3.9064 5.5955 -2.0849 9 6 2.4596 5.5078 -2.5784 10 6 2.0381 4.0383 -2.6492 11 6 1.9954 -0.7659 1.1376 12 6 2.0709 -2.2476 0.7637 13 6 0.6733 -2.7541 0.4017 14 6 3.0039 -2.4238 -0.4360 15 6 2.6111 -3.0464 1.9515 16 6 2.6860 -4.5058 1.5830 17 1 2.3795 -4.8309 0.5998 18 6 3.1470 -5.4257 2.5007 19 7 3.5207 -5.0298 3.6978 20 14 3.2405 -7.2346 2.0436 21 1 4.5711 -7.5277 1.4532 22 1 3.0453 -8.0632 3.2604 23 1 2.1794 -7.5506 1.0540 24 1 -0.3634 0.3923 -0.9498 25 1 -0.3633 -1.0188 0.1350 26 1 -0.3634 0.6263 0.8147 27 1 3.0796 1.3445 0.1082 28 1 1.5610 1.9274 0.8308 29 1 0.5471 2.0844 -1.4266 30 1 2.0657 1.5014 -2.1492 31 1 4.1852 2.9321 -1.5542 32 1 3.6095 2.9726 0.1294 33 1 5.0504 4.9326 -0.3823 34 1 3.3854 5.4346 0.0008 35 1 4.1967 6.6420 -1.9915 36 1 4.5647 5.0961 -2.7957 37 1 1.8064 6.0409 -1.8873 38 1 2.3853 5.9558 -3.5692 39 1 1.0037 3.9731 -2.9865 40 1 2.6829 3.5090 -3.3507 41 1 2.9920 -0.4035 1.3896 42 1 1.3355 -0.6410 1.9962 43 1 0.3516 -2.2954 -0.5333 44 1 0.6984 -3.8375 0.2851 45 1 -0.0257 -2.4902 1.1953 46 1 3.9995 -2.0630 -0.1781 47 1 3.0574 -3.4794 -0.7027 48 1 2.6191 -1.8547 -1.2823 49 1 3.6068 -2.6856 2.2094 50 1 1.9465 -2.9209 2.8062 51 1 3.8454 -5.6770 4.3433 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593703402.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:19 Heat of formation + Delta-G solvation = -7.089704 kcal Electronic energy + Delta-G solvation = -23384.772458 eV Core-core repulsion = 20318.464005 eV Total energy + Delta-G solvation = -3066.308453 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.42239 -38.15748 -35.38737 -33.52569 -32.11906 -31.11337 -28.65145 -27.63666 -26.83520 -25.92056 -24.88532 -23.42659 -23.18436 -22.00736 -20.41944 -19.81667 -17.85931 -16.48564 -16.16330 -15.58493 -15.28686 -14.83181 -14.65482 -14.49887 -14.29370 -14.01555 -13.51302 -13.39037 -13.08496 -12.80263 -12.73424 -12.35389 -12.28287 -11.99102 -11.93495 -11.67318 -11.42484 -11.18070 -11.05861 -10.86213 -10.83701 -10.72967 -10.59885 -10.55771 -10.37120 -10.34507 -10.25563 -9.94163 -9.56241 -8.92806 -8.81845 -8.42990 -8.29207 -7.92332 -5.93835 -3.93574 3.34877 3.41341 3.44211 3.64386 4.35981 4.51951 4.59863 4.62121 4.71091 4.94549 5.06380 5.17144 5.25282 5.29494 5.40579 5.41955 5.49239 5.52354 5.56888 5.64705 5.66049 5.70485 5.73040 5.78289 5.86330 5.88490 5.95786 5.98862 6.04406 6.09084 6.15402 6.21505 6.31787 6.36924 6.60798 6.73676 6.84033 6.88956 6.92624 6.96473 7.24885 7.27632 7.31857 7.45292 7.52643 7.74256 7.89583 8.06976 8.51929 9.11909 9.68976 11.17910 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.032989 B = 0.002969 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.560881 B = 9427.737149 C = 9744.693522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 N -0.534 5.534 3 C 0.053 3.947 4 C 0.061 3.939 5 N -0.539 5.539 6 C 0.047 3.953 7 C -0.117 4.117 8 C -0.122 4.122 9 C -0.116 4.116 10 C 0.057 3.943 11 C 0.067 3.933 12 C -0.051 4.051 13 C -0.132 4.132 14 C -0.115 4.115 15 C 0.033 3.967 16 C -0.505 4.505 17 H 0.059 0.941 18 C 0.054 3.946 19 N -0.898 5.898 20 Si 0.887 3.113 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.274 1.274 24 H 0.058 0.942 25 H 0.092 0.908 26 H 0.018 0.982 27 H 0.074 0.926 28 H 0.036 0.964 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.033 0.967 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.032 0.968 41 H 0.062 0.938 42 H 0.033 0.967 43 H 0.045 0.955 44 H 0.062 0.938 45 H 0.037 0.963 46 H 0.035 0.965 47 H 0.053 0.947 48 H 0.042 0.958 49 H 0.013 0.987 50 H 0.012 0.988 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.767 19.760 -11.176 22.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 N -0.258 5.258 3 C -0.076 4.076 4 C -0.067 4.067 5 N -0.264 5.264 6 C -0.081 4.081 7 C -0.155 4.155 8 C -0.160 4.160 9 C -0.154 4.154 10 C -0.072 4.072 11 C -0.061 4.061 12 C -0.052 4.052 13 C -0.189 4.189 14 C -0.172 4.172 15 C -0.005 4.005 16 C -0.543 4.543 17 H 0.077 0.923 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.715 3.285 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.199 1.199 24 H 0.077 0.923 25 H 0.110 0.890 26 H 0.037 0.963 27 H 0.092 0.908 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.050 0.950 41 H 0.080 0.920 42 H 0.052 0.948 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.072 0.928 48 H 0.062 0.938 49 H 0.032 0.968 50 H 0.030 0.970 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.828 19.740 -11.116 22.830 hybrid contribution 0.341 -1.097 0.124 1.155 sum -2.487 18.643 -10.992 21.784 Atomic orbital electron populations 1.22932 0.88118 1.03575 0.99814 1.61930 1.07515 1.11714 1.44674 1.22282 1.00087 0.89056 0.96155 1.22074 1.00211 0.86824 0.97591 1.61984 1.19893 1.19176 1.25386 1.22222 0.88287 0.96813 1.00753 1.21596 1.00872 0.95558 0.97491 1.21583 0.96749 1.00455 0.97164 1.21580 0.96735 0.95975 1.01110 1.22058 1.00896 0.94907 0.89292 1.22326 0.98596 0.95227 0.89922 1.20551 0.95368 0.91372 0.97873 1.21983 0.96195 1.01882 0.98797 1.21583 0.97765 1.00893 0.96958 1.19132 0.95685 0.94120 0.91552 1.21244 1.41933 0.92174 0.98975 0.92265 1.25014 0.95851 0.98649 0.95111 1.69964 1.44539 1.34104 1.05222 0.86673 0.78337 0.85662 0.77805 1.20814 1.21414 1.19937 0.92319 0.88974 0.96317 0.90805 0.94550 0.90781 0.94005 0.94834 0.90005 0.91626 0.91191 0.91982 0.92358 0.91171 0.91753 0.90932 0.94967 0.91990 0.94830 0.93598 0.91866 0.94394 0.94581 0.92771 0.93848 0.96843 0.96959 0.93200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.05 8.41 60.06 0.51 0.55 16 2 N -0.53 -7.99 3.78 -242.91 -0.92 -8.90 16 3 C 0.05 0.69 4.14 -3.82 -0.02 0.67 16 4 C 0.06 0.71 5.20 -3.82 -0.02 0.69 16 5 N -0.54 -5.81 4.81 -234.67 -1.13 -6.94 16 6 C 0.05 0.48 4.85 -3.84 -0.02 0.47 16 7 C -0.12 -1.02 6.09 -26.65 -0.16 -1.18 16 8 C -0.12 -0.95 6.00 -26.61 -0.16 -1.11 16 9 C -0.12 -0.92 6.09 -26.65 -0.16 -1.08 16 10 C 0.06 0.52 5.42 -3.83 -0.02 0.50 16 11 C 0.07 1.17 4.24 -3.82 -0.02 1.16 16 12 C -0.05 -1.03 0.60 -154.51 -0.09 -1.12 16 13 C -0.13 -2.50 6.67 37.16 0.25 -2.25 16 14 C -0.11 -2.25 8.06 37.16 0.30 -1.95 16 15 C 0.03 0.83 4.04 -27.88 -0.11 0.71 16 16 C -0.50 -13.89 7.53 -34.44 -0.26 -14.15 16 17 H 0.06 1.59 5.72 -52.49 -0.30 1.29 16 18 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 19 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 20 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 24 H 0.06 0.71 6.85 -51.93 -0.36 0.35 16 25 H 0.09 1.32 3.89 -51.93 -0.20 1.12 16 26 H 0.02 0.25 8.03 -51.93 -0.42 -0.17 16 27 H 0.07 0.98 5.85 -51.93 -0.30 0.68 16 28 H 0.04 0.49 8.04 -51.93 -0.42 0.07 16 29 H 0.07 0.85 6.72 -51.93 -0.35 0.51 16 30 H 0.04 0.52 8.08 -51.93 -0.42 0.11 16 31 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.88 5.81 -51.93 -0.30 0.58 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.64 8.12 -51.93 -0.42 0.21 16 40 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.06 1.10 7.57 -51.93 -0.39 0.71 16 42 H 0.03 0.61 7.85 -51.93 -0.41 0.20 16 43 H 0.05 0.77 6.21 -51.93 -0.32 0.45 16 44 H 0.06 1.32 6.38 -51.93 -0.33 0.99 16 45 H 0.04 0.69 7.47 -51.93 -0.39 0.31 16 46 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.05 1.14 6.62 -51.93 -0.34 0.79 16 48 H 0.04 0.78 7.61 -51.93 -0.40 0.38 16 49 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 51 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 370.25 15.07 5.58 5.58 Total: -1.00 -28.98 370.25 -10.69 -39.67 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -9.86 Total: -3.18 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -0.09 Total: -16.64 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: -1.31 Total: -42.12 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.98 -10.69 -39.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593703402.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.579 kcal (2) G-P(sol) polarization free energy of solvation -28.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds