Wall clock time and date at job start Tue Mar 31 2020 05:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 110.99636 * 2 1 4 4 C 1.53008 * 109.46928 * 293.95218 * 3 2 1 5 5 N 1.46899 * 109.46859 * 180.02562 * 4 3 2 6 6 C 1.46842 * 111.00465 * 45.78864 * 5 4 3 7 7 C 1.53034 * 109.52627 * 185.84208 * 6 5 4 8 8 C 1.53123 * 109.27487 * 300.81883 * 7 6 5 9 9 C 1.53117 * 109.16159 * 57.65341 * 8 7 6 10 10 C 1.46850 * 110.99712 * 169.99922 * 5 4 3 11 11 C 1.46896 * 110.99998 * 123.94888 * 2 1 3 12 12 C 1.53008 * 109.47013 * 85.43078 * 11 2 1 13 13 C 1.52998 * 109.47102 * 300.34894 * 12 11 2 14 14 C 1.53000 * 109.46616 * 60.34992 * 12 11 2 15 15 C 1.52995 * 109.46877 * 180.34570 * 12 11 2 16 16 C 1.50704 * 109.46977 * 180.02562 * 15 12 11 17 17 H 1.08000 * 119.99841 * 0.02562 * 16 15 12 18 18 C 1.37876 * 119.99973 * 179.97438 * 16 15 12 19 19 N 1.31505 * 120.00155 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99604 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47016 * 90.00115 * 20 18 16 22 22 H 1.48503 * 109.46718 * 210.00302 * 20 18 16 23 23 H 1.48500 * 109.47308 * 329.99947 * 20 18 16 24 24 H 1.09004 * 109.47463 * 67.55752 * 1 2 3 25 25 H 1.09002 * 109.47105 * 187.54801 * 1 2 3 26 26 H 1.08999 * 109.47668 * 307.55362 * 1 2 3 27 27 H 1.08994 * 109.47108 * 173.95580 * 3 2 1 28 28 H 1.08997 * 109.47402 * 53.94968 * 3 2 1 29 29 H 1.08994 * 109.46931 * 60.00253 * 4 3 2 30 30 H 1.09004 * 109.46678 * 300.00400 * 4 3 2 31 31 H 1.09001 * 109.45986 * 65.82058 * 6 5 4 32 32 H 1.09007 * 109.46289 * 305.85663 * 6 5 4 33 33 H 1.08994 * 109.50741 * 180.87983 * 7 6 5 34 34 H 1.09004 * 109.50447 * 60.75596 * 7 6 5 35 35 H 1.09001 * 109.51925 * 177.55944 * 8 7 6 36 36 H 1.08994 * 109.52221 * 297.74613 * 8 7 6 37 37 H 1.09012 * 109.50218 * 62.28525 * 9 8 7 38 38 H 1.09001 * 109.50363 * 182.40388 * 9 8 7 39 39 H 1.09003 * 109.46012 * 54.14430 * 10 5 4 40 40 H 1.08997 * 109.46184 * 294.17101 * 10 5 4 41 41 H 1.08994 * 109.47412 * 205.43120 * 11 2 1 42 42 H 1.09000 * 109.47094 * 325.43836 * 11 2 1 43 43 H 1.09004 * 109.46823 * 68.65446 * 13 12 11 44 44 H 1.08998 * 109.47040 * 188.65196 * 13 12 11 45 45 H 1.08996 * 109.47362 * 308.65040 * 13 12 11 46 46 H 1.08996 * 109.47276 * 59.99747 * 14 12 11 47 47 H 1.09003 * 109.46882 * 180.02562 * 14 12 11 48 48 H 1.09002 * 109.46906 * 299.99601 * 14 12 11 49 49 H 1.09000 * 109.47541 * 299.99726 * 15 12 11 50 50 H 1.08998 * 109.47630 * 60.00655 * 15 12 11 51 51 H 0.97001 * 120.00124 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0575 -1.3184 5 7 2.1582 3.4287 -1.3186 6 6 3.5476 3.4588 -0.8442 7 6 4.0141 4.9110 -0.7194 8 6 3.9064 5.5955 -2.0849 9 6 2.4596 5.5078 -2.5784 10 6 2.0381 4.0383 -2.6492 11 6 1.9954 -0.7659 1.1376 12 6 2.0709 -2.2476 0.7637 13 6 0.6733 -2.7541 0.4017 14 6 3.0039 -2.4238 -0.4360 15 6 2.6111 -3.0464 1.9515 16 6 2.6860 -4.5058 1.5830 17 1 2.3795 -4.8309 0.5998 18 6 3.1470 -5.4257 2.5007 19 7 3.5207 -5.0298 3.6978 20 14 3.2405 -7.2346 2.0436 21 1 4.5711 -7.5277 1.4532 22 1 3.0453 -8.0632 3.2604 23 1 2.1794 -7.5506 1.0540 24 1 -0.3634 0.3923 -0.9498 25 1 -0.3633 -1.0188 0.1350 26 1 -0.3634 0.6263 0.8147 27 1 3.0796 1.3445 0.1082 28 1 1.5610 1.9274 0.8308 29 1 0.5471 2.0844 -1.4266 30 1 2.0657 1.5014 -2.1492 31 1 4.1852 2.9321 -1.5542 32 1 3.6095 2.9726 0.1294 33 1 5.0504 4.9326 -0.3823 34 1 3.3854 5.4346 0.0008 35 1 4.1967 6.6420 -1.9915 36 1 4.5647 5.0961 -2.7957 37 1 1.8064 6.0409 -1.8873 38 1 2.3853 5.9558 -3.5692 39 1 1.0037 3.9731 -2.9865 40 1 2.6829 3.5090 -3.3507 41 1 2.9920 -0.4035 1.3896 42 1 1.3355 -0.6410 1.9962 43 1 0.3516 -2.2954 -0.5333 44 1 0.6984 -3.8375 0.2851 45 1 -0.0257 -2.4902 1.1953 46 1 3.9995 -2.0630 -0.1781 47 1 3.0574 -3.4794 -0.7027 48 1 2.6191 -1.8547 -1.2823 49 1 3.6068 -2.6856 2.2094 50 1 1.9465 -2.9209 2.8062 51 1 3.8454 -5.6770 4.3433 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593703402.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:18 Heat of formation + Delta-G solvation = -23.590022 kcal Electronic energy + Delta-G solvation = -23385.487966 eV Core-core repulsion = 20318.464005 eV Total energy + Delta-G solvation = -3067.023961 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.35374 -39.43802 -36.78603 -34.71776 -33.93517 -31.83900 -29.82486 -29.04416 -28.66082 -27.45022 -25.96371 -25.01725 -23.99606 -23.30359 -21.42688 -20.56592 -19.53572 -18.31208 -17.39230 -16.78930 -16.48401 -16.22254 -15.69619 -15.59473 -15.35834 -15.15637 -14.68304 -14.48766 -14.38912 -14.16008 -13.96733 -13.88440 -13.51782 -13.38064 -13.03875 -12.89341 -12.73309 -12.61936 -12.47003 -12.29365 -12.16646 -12.12223 -11.99996 -11.90313 -11.65973 -11.56259 -11.28795 -11.23519 -11.10621 -10.85127 -10.61937 -10.49594 -9.28104 -9.17116 -8.13226 -6.19966 1.41150 1.41579 1.52257 2.43952 2.71498 3.20625 3.30099 3.83085 3.91063 4.02731 4.05576 4.14134 4.18342 4.26212 4.34602 4.43777 4.48341 4.54547 4.55373 4.63145 4.66480 4.69343 4.76659 4.80822 4.86673 4.92346 4.96356 4.98119 5.05456 5.06431 5.10118 5.10759 5.13879 5.22571 5.23737 5.27348 5.30282 5.48656 5.53630 5.55214 5.62603 5.67406 5.88442 5.94588 6.03698 6.11459 6.19268 6.30383 6.39319 6.95061 7.47138 8.99188 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.032989 B = 0.002969 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.560881 B = 9427.737149 C = 9744.693522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 N -0.536 5.536 3 C 0.058 3.942 4 C 0.071 3.929 5 N -0.545 5.545 6 C 0.046 3.954 7 C -0.115 4.115 8 C -0.121 4.121 9 C -0.113 4.113 10 C 0.054 3.946 11 C 0.078 3.922 12 C -0.048 4.048 13 C -0.122 4.122 14 C -0.104 4.104 15 C 0.040 3.960 16 C -0.512 4.512 17 H 0.066 0.934 18 C -0.005 4.005 19 N -0.938 5.938 20 Si 0.955 3.045 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.262 1.262 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.022 0.978 27 H 0.069 0.931 28 H 0.033 0.967 29 H 0.080 0.920 30 H 0.035 0.965 31 H 0.027 0.973 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.029 0.971 41 H 0.055 0.945 42 H 0.026 0.974 43 H 0.073 0.927 44 H 0.041 0.959 45 H 0.039 0.961 46 H 0.028 0.972 47 H 0.038 0.962 48 H 0.065 0.935 49 H -0.017 1.017 50 H -0.017 1.017 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.491 20.586 -13.154 24.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 N -0.260 5.260 3 C -0.070 4.070 4 C -0.057 4.057 5 N -0.270 5.270 6 C -0.082 4.082 7 C -0.153 4.153 8 C -0.158 4.158 9 C -0.151 4.151 10 C -0.074 4.074 11 C -0.051 4.051 12 C -0.049 4.049 13 C -0.179 4.179 14 C -0.162 4.162 15 C 0.002 3.998 16 C -0.550 4.550 17 H 0.084 0.916 18 C -0.201 4.201 19 N -0.580 5.580 20 Si 0.781 3.219 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.187 1.187 24 H 0.098 0.902 25 H 0.103 0.897 26 H 0.040 0.960 27 H 0.087 0.913 28 H 0.052 0.948 29 H 0.098 0.902 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.047 0.953 41 H 0.073 0.927 42 H 0.044 0.956 43 H 0.092 0.908 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.047 0.953 47 H 0.057 0.943 48 H 0.084 0.916 49 H 0.001 0.999 50 H 0.002 0.998 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.562 20.580 -13.116 24.663 hybrid contribution 0.568 -1.288 0.752 1.596 sum -2.993 19.291 -12.364 23.108 Atomic orbital electron populations 1.22951 0.86922 1.03361 1.01141 1.61874 1.08575 1.12637 1.42868 1.22248 0.99708 0.87973 0.97064 1.21939 1.00466 0.87196 0.96114 1.62028 1.20061 1.18474 1.26468 1.22232 0.88092 0.97861 1.00020 1.21588 1.01169 0.94418 0.98145 1.21589 0.96769 1.01084 0.96405 1.21574 0.96572 0.94950 1.01975 1.22143 1.01289 0.95628 0.88297 1.22043 0.98390 0.93954 0.90665 1.20421 0.96115 0.92462 0.95872 1.21900 0.95256 1.00529 1.00228 1.21475 0.97341 1.00109 0.97244 1.19010 0.93581 0.94413 0.92784 1.21613 1.41075 0.93229 0.99110 0.91628 1.25915 0.95657 1.03513 0.95036 1.70106 1.45778 1.35689 1.06422 0.85585 0.78742 0.79902 0.77680 1.20147 1.21237 1.18659 0.90179 0.89685 0.95983 0.91303 0.94844 0.90207 0.94709 0.95507 0.90921 0.90868 0.91567 0.90706 0.92418 0.91490 0.90151 0.90316 0.95303 0.92678 0.95612 0.90841 0.93970 0.94204 0.95326 0.94327 0.91624 0.99866 0.99835 0.93182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.09 8.41 127.69 1.07 1.17 16 2 N -0.54 -15.23 3.78 -922.44 -3.48 -18.71 16 3 C 0.06 1.46 4.14 86.30 0.36 1.81 16 4 C 0.07 1.53 5.20 86.31 0.45 1.98 16 5 N -0.54 -10.94 4.81 -896.35 -4.31 -15.24 16 6 C 0.05 0.90 4.85 86.33 0.42 1.32 16 7 C -0.12 -1.85 6.09 30.65 0.19 -1.66 16 8 C -0.12 -1.64 6.00 30.67 0.18 -1.46 16 9 C -0.11 -1.53 6.09 30.65 0.19 -1.35 16 10 C 0.05 0.90 5.42 86.32 0.47 1.37 16 11 C 0.08 2.72 4.24 86.31 0.37 3.09 16 12 C -0.05 -1.95 0.60 -52.18 -0.03 -1.98 16 13 C -0.12 -4.53 6.67 71.98 0.48 -4.05 16 14 C -0.10 -4.04 8.06 71.98 0.58 -3.46 16 15 C 0.04 2.08 4.04 29.85 0.12 2.20 16 16 C -0.51 -28.61 7.53 25.60 0.19 -28.42 16 17 H 0.07 3.52 5.72 -2.91 -0.02 3.51 16 18 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 19 N -0.94 -57.84 13.29 21.45 0.28 -57.56 16 20 Si 0.96 44.78 29.54 68.60 2.03 46.80 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 23 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 24 H 0.08 1.68 6.85 -2.39 -0.02 1.66 16 25 H 0.08 2.25 3.89 -2.39 -0.01 2.24 16 26 H 0.02 0.54 8.03 -2.39 -0.02 0.52 16 27 H 0.07 1.80 5.85 -2.39 -0.01 1.79 16 28 H 0.03 0.87 8.04 -2.39 -0.02 0.85 16 29 H 0.08 1.64 6.72 -2.39 -0.02 1.62 16 30 H 0.03 0.81 8.08 -2.38 -0.02 0.79 16 31 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.07 1.54 5.81 -2.38 -0.01 1.52 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.08 1.21 8.12 -2.39 -0.02 1.19 16 40 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.05 1.99 7.57 -2.39 -0.02 1.97 16 42 H 0.03 0.94 7.85 -2.39 -0.02 0.92 16 43 H 0.07 2.31 6.21 -2.38 -0.01 2.29 16 44 H 0.04 1.72 6.38 -2.39 -0.02 1.71 16 45 H 0.04 1.43 7.47 -2.39 -0.02 1.41 16 46 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.04 1.59 6.62 -2.39 -0.02 1.57 16 48 H 0.06 2.24 7.61 -2.39 -0.02 2.22 16 49 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 50 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 51 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -62.48 370.25 0.87 -61.61 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.85 Total: 12.33 kcal Atomic # 6 Polarization: -34.73 SS G_CDS: 5.49 Total: -29.24 kcal Atomic # 7 Polarization: -84.01 SS G_CDS: -7.51 Total: -91.51 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -62.48 0.87 -61.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593703402.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.023 kcal (2) G-P(sol) polarization free energy of solvation -62.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds