Wall clock time and date at job start Tue Mar 31 2020 05:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46905 * 110.99700 * 2 1 4 4 C 1.50698 * 109.47282 * 66.04543 * 3 2 1 5 5 H 1.08002 * 120.00062 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00058 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99842 * 179.97438 * 6 4 3 8 8 Si 1.86794 * 119.99799 * 359.97438 * 6 4 3 9 9 H 1.48507 * 109.46908 * 90.00156 * 8 6 4 10 10 H 1.48503 * 109.46924 * 209.99490 * 8 6 4 11 11 H 1.48491 * 109.47401 * 330.00033 * 8 6 4 12 12 C 1.46897 * 111.00067 * 236.04566 * 2 1 3 13 13 C 1.52999 * 109.46881 * 195.98646 * 12 2 1 14 14 H 1.08990 * 109.47334 * 301.20446 * 13 12 2 15 15 O 1.42907 * 109.46919 * 61.20670 * 13 12 2 16 16 C 1.53003 * 109.47071 * 181.20237 * 13 12 2 17 17 N 1.46898 * 109.47290 * 180.02562 * 16 13 12 18 18 C 1.47696 * 110.99925 * 259.54284 * 17 16 13 19 19 C 1.52944 * 86.96239 * 219.83407 * 18 17 16 20 20 H 1.09006 * 112.29555 * 276.20876 * 19 18 17 21 21 C 1.50481 * 115.95947 * 146.66822 * 19 18 17 22 22 C 1.51626 * 114.44162 * 293.73225 * 21 19 18 23 23 C 1.52616 * 111.02479 * 313.26161 * 22 21 19 24 24 C 1.52982 * 108.77173 * 63.91224 * 23 22 21 25 25 C 1.48154 * 111.00000 * 164.11026 * 17 16 13 26 26 H 1.09006 * 113.84995 * 255.06310 * 25 17 16 27 27 H 1.08993 * 109.46602 * 178.86157 * 1 2 3 28 28 H 1.09001 * 109.46359 * 58.86600 * 1 2 3 29 29 H 1.08999 * 109.47232 * 298.86725 * 1 2 3 30 30 H 1.09003 * 109.46727 * 186.04342 * 3 2 1 31 31 H 1.08995 * 109.47260 * 306.04592 * 3 2 1 32 32 H 0.97007 * 120.00013 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.47180 * 315.98456 * 12 2 1 34 34 H 1.08994 * 109.47022 * 75.98689 * 12 2 1 35 35 H 0.96691 * 114.00379 * 60.00018 * 15 13 12 36 36 H 1.09000 * 109.47245 * 300.00100 * 16 13 12 37 37 H 1.08995 * 109.47050 * 60.00217 * 16 13 12 38 38 H 1.08996 * 113.63674 * 334.35471 * 18 17 16 39 39 H 1.09010 * 113.63440 * 105.31987 * 18 17 16 40 40 H 1.09003 * 108.49160 * 55.02100 * 21 19 18 41 41 H 1.09005 * 108.49231 * 172.44635 * 21 19 18 42 42 H 1.09005 * 109.16503 * 73.66271 * 22 21 19 43 43 H 1.09009 * 109.16826 * 192.86565 * 22 21 19 44 44 H 1.09001 * 109.58986 * 183.69543 * 23 22 21 45 45 H 1.09001 * 109.58685 * 304.12634 * 23 22 21 46 46 H 1.09002 * 109.51446 * 176.43011 * 24 23 22 47 47 H 1.08998 * 109.51661 * 56.27177 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5116 2.0485 6 6 2.0276 3.3492 1.5288 7 7 1.7143 3.9391 2.6618 8 14 3.0020 4.2754 0.2319 9 1 2.0661 4.9798 -0.6810 10 1 3.8887 5.2665 0.8928 11 1 3.8255 3.3164 -0.5472 12 6 1.9955 -0.7660 -1.1375 13 6 3.4729 -1.0838 -0.8983 14 1 4.0291 -0.1547 -0.7748 15 8 3.6041 -1.8782 0.2824 16 6 4.0290 -1.8557 -2.0966 17 7 5.4473 -2.1614 -1.8667 18 6 6.3174 -1.2177 -2.5973 19 6 7.2143 -2.4157 -2.9129 20 1 7.9105 -2.6357 -2.1035 21 6 7.9160 -2.3808 -4.2436 22 6 6.9920 -2.4696 -5.4426 23 6 5.9678 -3.5868 -5.2630 24 6 5.0727 -3.2469 -4.0699 25 6 5.9215 -3.2124 -2.7971 26 1 6.0473 -4.1897 -2.3308 27 1 -0.3632 -1.0274 -0.0204 28 1 -0.3632 0.5314 -0.8797 29 1 -0.3633 0.4961 0.8999 30 1 3.0798 1.3445 -0.1082 31 1 1.5611 1.9274 -0.8309 32 1 1.9895 4.8550 2.8241 33 1 1.4358 -1.6957 -1.2398 34 1 1.8934 -0.1782 -2.0497 35 1 3.1334 -2.7219 0.2431 36 1 3.4728 -2.7849 -2.2202 37 1 3.9290 -1.2499 -2.9972 38 1 5.8461 -0.7808 -3.4776 39 1 6.7911 -0.4741 -1.9562 40 1 8.4823 -1.4520 -4.3116 41 1 8.6183 -3.2134 -4.2861 42 1 6.4693 -1.5207 -5.5626 43 1 7.5837 -2.6669 -6.3366 44 1 5.3594 -3.6730 -6.1633 45 1 6.4835 -4.5287 -5.0764 46 1 4.2964 -4.0055 -3.9693 47 1 4.6118 -2.2717 -4.2266 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594713876.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:14 Heat of formation + Delta-G solvation = -8.918659 kcal Electronic energy + Delta-G solvation = -23394.406744 eV Core-core repulsion = 20192.185887 eV Total energy + Delta-G solvation = -3202.220857 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.56244 -37.86138 -35.74436 -35.01866 -32.40566 -32.14055 -30.50666 -28.34004 -27.70394 -26.31232 -24.94106 -23.64252 -22.56564 -21.61781 -20.72159 -19.89876 -18.01318 -16.91847 -16.63744 -16.08806 -15.79853 -15.48825 -15.09162 -14.71374 -14.46213 -14.08069 -13.95472 -13.72133 -13.47453 -13.06145 -12.85648 -12.79336 -12.28127 -12.19995 -11.93056 -11.78264 -11.52120 -11.36043 -11.21998 -11.09130 -11.04747 -10.88551 -10.66506 -10.59658 -10.36872 -10.09591 -10.01732 -9.80743 -9.52505 -9.15693 -8.72785 -8.52663 -7.31110 -6.00270 -3.96500 3.29719 3.37496 3.39309 3.77594 4.12147 4.33304 4.45604 4.55946 4.61841 4.69828 4.81473 4.88077 4.93657 5.08151 5.15010 5.19305 5.29079 5.31083 5.35704 5.39829 5.47668 5.52965 5.59030 5.64113 5.68810 5.69820 5.71972 5.80177 5.88446 5.93536 5.98531 6.01413 6.06296 6.16289 6.19581 6.26075 6.51959 6.70375 6.86418 6.97701 7.02538 7.65370 7.92490 8.08032 8.26496 8.71560 9.09238 9.61626 11.13213 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021157 B = 0.004040 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.125445 B = 6929.801401 C = 7596.479297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.520 5.520 3 C 0.162 3.838 4 C -0.504 4.504 5 H 0.081 0.919 6 C 0.068 3.932 7 N -0.901 5.901 8 Si 0.874 3.126 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.268 1.268 12 C 0.023 3.977 13 C 0.125 3.875 14 H 0.096 0.904 15 O -0.528 6.528 16 C -0.013 4.013 17 N -0.451 5.451 18 C -0.004 4.004 19 C -0.105 4.105 20 H 0.097 0.903 21 C -0.107 4.107 22 C -0.118 4.118 23 C -0.114 4.114 24 C -0.135 4.135 25 C 0.032 3.968 26 H 0.093 0.907 27 H 0.046 0.954 28 H 0.010 0.990 29 H 0.079 0.921 30 H 0.029 0.971 31 H -0.020 1.020 32 H 0.263 0.737 33 H 0.064 0.936 34 H 0.027 0.973 35 H 0.359 0.641 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.068 0.932 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.100 -15.876 -18.044 25.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.244 5.244 3 C 0.036 3.964 4 C -0.543 4.543 5 H 0.099 0.901 6 C -0.134 4.134 7 N -0.541 5.541 8 Si 0.702 3.298 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.193 1.193 12 C -0.107 4.107 13 C 0.064 3.936 14 H 0.114 0.886 15 O -0.330 6.330 16 C -0.143 4.143 17 N -0.171 5.171 18 C -0.133 4.133 19 C -0.124 4.124 20 H 0.115 0.885 21 C -0.145 4.145 22 C -0.156 4.156 23 C -0.152 4.152 24 C -0.174 4.174 25 C -0.077 4.077 26 H 0.111 0.889 27 H 0.064 0.936 28 H 0.028 0.972 29 H 0.098 0.902 30 H 0.047 0.953 31 H -0.002 1.002 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.045 0.955 35 H 0.204 0.796 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.656 -15.474 -16.541 24.623 hybrid contribution -0.386 0.803 -2.505 2.659 sum 9.270 -14.671 -19.046 25.767 Atomic orbital electron populations 1.22240 0.88236 0.99270 1.01218 1.61864 1.06904 1.16368 1.39235 1.20231 0.95288 0.83998 0.96903 1.21031 1.35253 0.97066 1.00919 0.90101 1.24891 0.95790 0.97380 0.95301 1.69894 1.47053 1.13218 1.23892 0.86878 0.80672 0.80048 0.82240 1.20454 1.21076 1.19312 1.22767 0.96361 0.98344 0.93249 1.21759 0.93790 0.94141 0.83899 0.88572 1.86709 1.75279 1.33224 1.37747 1.23470 0.91582 1.00598 0.98638 1.69419 1.03209 1.04557 1.39953 1.23993 0.95557 0.96438 0.97356 1.21822 0.95756 0.96839 0.97973 0.88525 1.20556 0.98282 1.02269 0.93374 1.21178 0.97606 0.99009 0.97807 1.21355 0.97383 0.98829 0.97654 1.22002 0.98214 1.02508 0.94628 1.23258 0.94538 0.97915 0.92024 0.88929 0.93559 0.97193 0.90187 0.95323 1.00245 0.92725 0.91797 0.95472 0.79615 0.90883 0.92849 0.91367 0.89746 0.91665 0.92081 0.92308 0.91884 0.91903 0.91699 0.91371 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 9.33 60.07 0.56 1.32 16 2 N -0.52 -11.24 4.60 -244.37 -1.12 -12.37 16 3 C 0.16 4.08 3.64 -4.97 -0.02 4.06 16 4 C -0.50 -14.85 9.08 -34.44 -0.31 -15.16 16 5 H 0.08 2.59 7.34 -52.49 -0.39 2.20 16 6 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 7 N -0.90 -28.30 13.96 55.43 0.77 -27.52 16 8 Si 0.87 22.09 27.47 -169.99 -4.67 17.42 16 9 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 11 H -0.27 -6.53 6.54 56.52 0.37 -6.16 16 12 C 0.02 0.38 4.63 -3.83 -0.02 0.37 16 13 C 0.12 2.06 3.26 -26.73 -0.09 1.98 16 14 H 0.10 1.90 6.56 -51.93 -0.34 1.56 16 15 O -0.53 -9.44 13.09 -35.23 -0.46 -9.91 16 16 C -0.01 -0.17 3.56 -3.82 -0.01 -0.18 16 17 N -0.45 -5.73 6.21 -241.78 -1.50 -7.23 16 18 C 0.00 -0.05 6.95 -8.10 -0.06 -0.11 16 19 C -0.11 -0.99 4.06 -92.29 -0.37 -1.37 16 20 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 21 C -0.11 -0.82 5.53 -28.69 -0.16 -0.97 16 22 C -0.12 -0.85 5.63 -27.62 -0.16 -1.01 16 23 C -0.11 -0.81 5.90 -26.94 -0.16 -0.97 16 24 C -0.14 -1.14 4.12 -26.73 -0.11 -1.25 16 25 C 0.03 0.32 4.49 -72.05 -0.32 -0.01 16 26 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.05 0.76 7.98 -51.93 -0.41 0.34 16 28 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.08 1.74 6.89 -51.93 -0.36 1.38 16 30 H 0.03 0.74 5.44 -51.93 -0.28 0.46 16 31 H -0.02 -0.50 7.55 -51.93 -0.39 -0.89 16 32 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 33 H 0.06 0.92 7.88 -51.93 -0.41 0.51 16 34 H 0.03 0.45 8.05 -51.93 -0.42 0.03 16 35 H 0.36 5.00 9.04 45.56 0.41 5.41 16 36 H 0.07 0.81 7.42 -51.93 -0.39 0.43 16 37 H 0.05 0.64 5.85 -51.93 -0.30 0.34 16 38 H 0.07 0.75 6.16 -51.93 -0.32 0.43 16 39 H 0.08 1.06 8.14 -51.92 -0.42 0.63 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.46 7.79 -51.93 -0.40 0.05 16 43 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.54 8.05 -51.93 -0.42 0.13 16 47 H 0.07 0.66 5.00 -51.93 -0.26 0.40 16 LS Contribution 350.32 15.07 5.28 5.28 Total: -1.00 -32.79 350.32 -10.68 -43.46 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -7.65 Total: 2.25 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -1.32 Total: -11.39 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: -1.85 Total: -47.12 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -0.46 Total: -9.91 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.79 -10.68 -43.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594713876.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.546 kcal (2) G-P(sol) polarization free energy of solvation -32.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds