Wall clock time and date at job start Tue Mar 31 2020 05:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47467 * 2 1 4 4 C 1.53002 * 109.46996 * 240.00005 * 2 1 3 5 5 N 1.46897 * 109.46886 * 120.00072 * 2 1 3 6 6 C 1.48535 * 110.99867 * 172.61531 * 5 2 1 7 7 C 1.54934 * 103.22603 * 200.27734 * 6 5 2 8 8 C 1.54591 * 102.92394 * 37.41542 * 7 6 5 9 9 H 1.09000 * 110.39254 * 96.99965 * 8 7 6 10 10 N 1.46900 * 110.31499 * 219.12526 * 8 7 6 11 11 C 1.46899 * 110.99926 * 270.72086 * 10 8 7 12 12 C 1.52995 * 109.47025 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.47589 * 59.99622 * 12 11 10 14 14 C 1.53001 * 109.47117 * 299.99406 * 12 11 10 15 15 C 1.53000 * 109.47190 * 179.97438 * 12 11 10 16 16 C 1.50706 * 109.47216 * 179.97438 * 15 12 11 17 17 H 1.07995 * 119.99867 * 359.97438 * 16 15 12 18 18 C 1.37879 * 119.99963 * 180.02562 * 16 15 12 19 19 N 1.31513 * 120.00188 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99909 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46794 * 90.00774 * 20 18 16 22 22 H 1.48499 * 109.46907 * 210.00124 * 20 18 16 23 23 H 1.48497 * 109.47345 * 330.00479 * 20 18 16 24 24 C 1.47902 * 111.00206 * 55.21823 * 5 2 1 25 25 H 1.09000 * 109.46984 * 300.00241 * 1 2 3 26 26 H 1.09006 * 109.46900 * 59.99854 * 1 2 3 27 27 H 1.08994 * 109.47547 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47205 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.46955 * 300.00477 * 3 2 1 30 30 H 1.09005 * 109.46904 * 59.99557 * 3 2 1 31 31 H 1.09004 * 109.47037 * 292.82991 * 4 2 1 32 32 H 1.09002 * 109.47373 * 52.83007 * 4 2 1 33 33 H 1.08999 * 109.47197 * 172.83712 * 4 2 1 34 34 H 1.08993 * 110.66791 * 318.71354 * 6 5 2 35 35 H 1.09005 * 110.66562 * 81.67661 * 6 5 2 36 36 H 1.09001 * 110.72482 * 279.05529 * 7 6 5 37 37 H 1.09005 * 110.72542 * 155.77320 * 7 6 5 38 38 H 1.00903 * 110.99144 * 34.66689 * 10 8 7 39 39 H 1.08996 * 109.47678 * 59.99244 * 11 10 8 40 40 H 1.09001 * 109.46666 * 299.99304 * 11 10 8 41 41 H 1.09001 * 109.47158 * 180.02562 * 13 12 11 42 42 H 1.09001 * 109.47135 * 299.99919 * 13 12 11 43 43 H 1.08991 * 109.47312 * 59.99804 * 13 12 11 44 44 H 1.08999 * 109.47291 * 300.00236 * 14 12 11 45 45 H 1.08997 * 109.47074 * 59.99925 * 14 12 11 46 46 H 1.09001 * 109.47667 * 180.02562 * 14 12 11 47 47 H 1.09000 * 109.47279 * 299.99386 * 15 12 11 48 48 H 1.08999 * 109.47090 * 59.99843 * 15 12 11 49 49 H 0.96998 * 120.00547 * 179.97438 * 19 18 16 50 50 H 1.09002 * 109.91188 * 26.49589 * 24 5 2 51 51 H 1.08994 * 110.08605 * 265.29038 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0197 -0.6925 1.1994 6 6 3.4936 -0.8686 1.1480 7 6 3.7482 -2.0208 2.1520 8 6 2.5349 -2.9514 1.9253 9 1 2.7996 -3.7620 1.2464 10 7 2.0620 -3.4941 3.2059 11 6 2.7516 -4.7494 3.5325 12 6 2.2342 -5.2824 4.8700 13 6 0.7291 -5.5385 4.7692 14 6 2.5037 -4.2519 5.9683 15 6 2.9519 -6.5901 5.2099 16 6 2.4426 -7.1149 6.5277 17 1 1.6834 -6.5699 7.0688 18 6 2.9469 -8.2902 7.0429 19 7 2.5029 -8.7478 8.1931 20 14 4.2607 -9.2324 6.1072 21 1 5.6038 -8.7611 6.5305 22 1 4.1309 -10.6829 6.3976 23 1 4.0917 -9.0022 4.6500 24 6 1.4537 -2.0558 1.2925 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.7852 -1.7793 -1.1874 32 1 1.5758 -0.2869 -2.1346 33 1 3.1225 -0.6116 -1.3157 34 1 3.8121 -1.1544 0.1456 35 1 4.0012 0.0419 1.4665 36 1 3.7604 -1.6451 3.1752 37 1 4.6794 -2.5372 1.9186 38 1 2.1710 -2.8182 3.9472 39 1 3.8237 -4.5669 3.6047 40 1 2.5599 -5.4834 2.7498 41 1 0.3605 -5.9178 5.7223 42 1 0.2175 -4.6070 4.5269 43 1 0.5371 -6.2726 3.9868 44 1 3.5759 -4.0694 6.0402 45 1 1.9921 -3.3204 5.7260 46 1 2.1355 -4.6317 6.9214 47 1 2.7595 -7.3242 4.4274 48 1 4.0242 -6.4081 5.2816 49 1 2.8573 -9.5749 8.5555 50 1 1.2035 -2.4227 0.2971 51 1 0.5628 -2.0492 1.9204 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594956514.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:07 Heat of formation + Delta-G solvation = -8.641711 kcal Electronic energy + Delta-G solvation = -23570.525719 eV Core-core repulsion = 20504.149966 eV Total energy + Delta-G solvation = -3066.375753 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.13592 -37.74402 -35.70928 -32.98731 -31.87047 -29.55185 -28.45922 -27.66607 -27.46631 -26.80629 -26.33880 -24.70962 -22.23872 -21.91062 -20.57309 -18.88433 -17.86510 -16.79893 -16.51337 -15.91856 -15.09577 -14.57309 -14.50084 -14.34697 -14.08492 -13.80832 -13.54370 -13.13105 -12.93852 -12.74612 -12.49825 -12.29814 -12.26545 -12.15240 -11.92077 -11.86668 -11.72055 -11.45198 -11.31719 -11.15852 -11.03490 -10.96587 -10.81987 -10.80588 -10.68074 -10.46826 -10.29650 -9.78991 -9.64911 -9.25130 -8.87406 -8.47881 -8.46113 -8.07673 -5.98096 -3.94036 3.32965 3.40768 3.44381 3.76293 4.31544 4.49836 4.51713 4.54247 4.66702 4.79355 4.90042 5.09842 5.18364 5.26077 5.30779 5.35037 5.40802 5.46403 5.50042 5.54831 5.60556 5.62948 5.65935 5.68467 5.75178 5.80073 5.84463 5.89591 5.94310 6.04449 6.08800 6.11818 6.21514 6.29643 6.45806 6.63335 6.72837 6.79216 6.83720 6.97338 7.12005 7.17994 7.22470 7.36314 7.37307 7.49778 7.69428 7.87796 8.62183 9.08205 9.65133 11.15099 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.036226 B = 0.003126 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.737689 B = 8955.010016 C = 9164.722271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.092 3.908 3 C -0.135 4.135 4 C -0.184 4.184 5 N -0.504 5.504 6 C 0.031 3.969 7 C -0.153 4.153 8 C 0.079 3.921 9 H 0.077 0.923 10 N -0.675 5.675 11 C 0.068 3.932 12 C -0.049 4.049 13 C -0.117 4.117 14 C -0.130 4.130 15 C -0.004 4.004 16 C -0.506 4.506 17 H 0.078 0.922 18 C 0.064 3.936 19 N -0.906 5.906 20 Si 0.875 3.125 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.267 1.267 24 C 0.041 3.959 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.344 0.656 39 H 0.022 0.978 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.045 0.955 43 H 0.038 0.962 44 H 0.039 0.961 45 H 0.036 0.964 46 H 0.069 0.931 47 H 0.014 0.986 48 H 0.007 0.993 49 H 0.261 0.739 50 H 0.048 0.952 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.077 18.426 -18.346 26.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.002 3.998 3 C -0.192 4.192 4 C -0.242 4.242 5 N -0.228 5.228 6 C -0.097 4.097 7 C -0.193 4.193 8 C -0.033 4.033 9 H 0.095 0.905 10 N -0.307 5.307 11 C -0.061 4.061 12 C -0.049 4.049 13 C -0.174 4.174 14 C -0.188 4.188 15 C -0.042 4.042 16 C -0.544 4.544 17 H 0.096 0.904 18 C -0.136 4.136 19 N -0.546 5.546 20 Si 0.703 3.297 21 H -0.205 1.205 22 H -0.216 1.216 23 H -0.192 1.192 24 C -0.087 4.087 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.165 0.835 39 H 0.040 0.960 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.088 0.912 47 H 0.032 0.968 48 H 0.025 0.975 49 H 0.071 0.929 50 H 0.066 0.934 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.783 18.281 -18.046 25.700 hybrid contribution 2.006 -0.866 -0.923 2.372 sum 1.223 17.415 -18.969 25.780 Atomic orbital electron populations 1.21892 0.93585 1.02294 1.02029 1.21196 0.95589 0.94637 0.88379 1.21803 1.00825 0.94686 1.01915 1.22534 1.01581 1.01325 0.98802 1.65044 1.04994 1.16842 1.35968 1.23247 0.89447 0.98639 0.98320 1.23255 0.99134 0.96667 1.00197 1.22398 0.92142 0.95601 0.93152 0.90455 1.60613 1.59387 1.06998 1.03691 1.22146 0.94756 0.90656 0.98511 1.20413 0.96548 0.96322 0.91623 1.21604 0.94742 0.99653 1.01440 1.21778 0.99792 0.96934 1.00256 1.19628 0.94870 0.92235 0.97468 1.21149 1.22715 1.07096 1.03428 0.90404 1.25019 0.96514 0.97343 0.94746 1.69908 1.43771 1.22065 1.18844 0.86849 0.82582 0.79143 0.81094 1.20540 1.21575 1.19158 1.22985 0.98863 0.87191 0.99642 0.91715 0.92470 0.92351 0.92848 0.92515 0.91800 0.92113 0.92125 0.92213 0.93178 0.90467 0.90604 0.91364 0.83538 0.95980 0.91804 0.92190 0.93620 0.94305 0.94225 0.94505 0.91214 0.96778 0.97467 0.92913 0.93400 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.27 37.16 0.31 -0.84 16 2 C 0.09 0.78 0.69 -131.60 -0.09 0.69 16 3 C -0.13 -1.03 8.48 37.16 0.32 -0.71 16 4 C -0.18 -1.44 7.59 37.16 0.28 -1.16 16 5 N -0.50 -5.06 5.09 -214.85 -1.09 -6.15 16 6 C 0.03 0.30 5.49 -1.90 -0.01 0.29 16 7 C -0.15 -1.62 6.72 -24.87 -0.17 -1.79 16 8 C 0.08 0.92 3.31 -66.36 -0.22 0.70 16 9 H 0.08 0.93 7.82 -51.93 -0.41 0.53 16 10 N -0.68 -9.31 5.41 -105.30 -0.57 -9.88 16 11 C 0.07 1.10 4.50 -3.83 -0.02 1.09 16 12 C -0.05 -0.94 0.60 -154.51 -0.09 -1.03 16 13 C -0.12 -2.26 8.06 37.16 0.30 -1.96 16 14 C -0.13 -2.41 7.89 37.16 0.29 -2.11 16 15 C 0.00 -0.10 3.11 -27.88 -0.09 -0.19 16 16 C -0.51 -14.02 8.20 -34.44 -0.28 -14.31 16 17 H 0.08 2.30 5.92 -52.49 -0.31 1.99 16 18 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 19 N -0.91 -27.92 13.96 55.43 0.77 -27.15 16 20 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 23 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 24 C 0.04 0.45 4.90 -2.75 -0.01 0.43 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.50 6.77 -51.93 -0.35 0.15 16 28 H 0.05 0.40 7.15 -51.93 -0.37 0.03 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.52 6.05 -51.93 -0.31 0.20 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.46 6.37 -51.93 -0.33 0.13 16 34 H 0.05 0.45 5.54 -51.93 -0.29 0.16 16 35 H 0.08 0.70 7.71 -51.93 -0.40 0.30 16 36 H 0.08 0.86 7.56 -51.93 -0.39 0.47 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.34 4.76 6.14 -39.29 -0.24 4.52 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 1.06 8.07 -51.93 -0.42 0.64 16 41 H 0.06 1.29 6.62 -51.93 -0.34 0.94 16 42 H 0.04 0.79 7.60 -51.93 -0.39 0.40 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.04 0.58 6.57 -51.93 -0.34 0.24 16 46 H 0.07 1.46 6.62 -51.93 -0.34 1.12 16 47 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 48 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 49 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 50 H 0.05 0.50 5.29 -51.93 -0.27 0.22 16 51 H 0.09 1.12 7.92 -51.93 -0.41 0.70 16 LS Contribution 368.07 15.07 5.55 5.55 Total: -1.00 -28.94 368.07 -9.27 -38.21 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -9.67 Total: 1.35 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: 0.42 Total: -19.14 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: -0.89 Total: -43.19 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.94 -9.27 -38.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594956514.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.567 kcal (2) G-P(sol) polarization free energy of solvation -28.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds