Wall clock time and date at job start Tue Mar 31 2020 05:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46944 * 2 1 4 4 C 1.52996 * 109.46946 * 239.99950 * 2 1 3 5 5 N 1.46897 * 109.47197 * 119.99724 * 2 1 3 6 6 C 1.47846 * 111.00165 * 298.15485 * 5 2 1 7 7 C 1.55110 * 104.90790 * 146.23755 * 6 5 2 8 8 C 1.55141 * 101.55992 * 323.16164 * 7 6 5 9 9 H 1.09005 * 110.70218 * 276.96739 * 8 7 6 10 10 N 1.46894 * 110.71016 * 153.90666 * 8 7 6 11 11 C 1.46902 * 111.00321 * 88.79967 * 10 8 7 12 12 C 1.52996 * 109.47208 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.47280 * 60.00462 * 12 11 10 14 14 C 1.53001 * 109.47297 * 300.00295 * 12 11 10 15 15 C 1.53002 * 109.47222 * 180.02562 * 12 11 10 16 16 C 1.50696 * 109.47262 * 180.02562 * 15 12 11 17 17 H 1.07998 * 120.00265 * 0.02562 * 16 15 12 18 18 C 1.37883 * 119.99958 * 179.97438 * 16 15 12 19 19 N 1.31515 * 119.99804 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00008 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47136 * 180.02562 * 20 18 16 22 22 H 1.48504 * 109.46633 * 60.00650 * 20 18 16 23 23 H 1.48493 * 109.47219 * 300.00798 * 20 18 16 24 24 C 1.47442 * 110.99770 * 58.99506 * 5 2 1 25 25 H 1.09005 * 109.46870 * 306.14042 * 1 2 3 26 26 H 1.09002 * 109.46770 * 66.13436 * 1 2 3 27 27 H 1.08995 * 109.47037 * 186.13956 * 1 2 3 28 28 H 1.09000 * 109.47022 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47272 * 299.99363 * 3 2 1 30 30 H 1.08996 * 109.47417 * 60.00140 * 3 2 1 31 31 H 1.08994 * 109.47309 * 299.99666 * 4 2 1 32 32 H 1.08998 * 109.47614 * 60.00426 * 4 2 1 33 33 H 1.09000 * 109.46918 * 179.97438 * 4 2 1 34 34 H 1.09001 * 110.37314 * 265.19035 * 6 5 2 35 35 H 1.08999 * 110.37253 * 27.41922 * 6 5 2 36 36 H 1.08995 * 111.15163 * 205.04853 * 7 6 5 37 37 H 1.09003 * 110.92424 * 81.16710 * 7 6 5 38 38 H 1.00901 * 111.00163 * 324.85086 * 10 8 7 39 39 H 1.09006 * 109.46842 * 60.00222 * 11 10 8 40 40 H 1.09001 * 109.47105 * 300.00349 * 11 10 8 41 41 H 1.09000 * 109.47835 * 180.02562 * 13 12 11 42 42 H 1.09004 * 109.46871 * 300.00278 * 13 12 11 43 43 H 1.09001 * 109.47118 * 59.99567 * 13 12 11 44 44 H 1.08997 * 109.47060 * 299.99827 * 14 12 11 45 45 H 1.08993 * 109.47212 * 60.00018 * 14 12 11 46 46 H 1.09003 * 109.46782 * 179.97438 * 14 12 11 47 47 H 1.08997 * 109.47146 * 60.00166 * 15 12 11 48 48 H 1.09001 * 109.46956 * 300.00298 * 15 12 11 49 49 H 0.96998 * 120.00333 * 359.97438 * 19 18 16 50 50 H 1.09000 * 109.88946 * 117.33495 * 24 5 2 51 51 H 1.09003 * 109.88843 * 356.14789 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0197 -0.6924 1.1994 6 6 1.5823 0.0032 2.4285 7 6 1.3583 -1.1261 3.4679 8 6 0.7709 -2.2542 2.5796 9 1 -0.3004 -2.1134 2.4361 10 7 1.0456 -3.5730 3.1655 11 6 -0.0209 -3.9687 4.0949 12 6 0.2996 -5.3443 4.6830 13 6 1.6317 -5.2808 5.4328 14 6 0.3987 -6.3714 3.5533 15 6 -0.8116 -5.7568 5.6506 16 6 -0.4956 -7.1114 6.2303 17 1 0.4075 -7.6266 5.9382 18 6 -1.3591 -7.6928 7.1344 19 7 -2.4587 -7.0653 7.4905 20 14 -0.9679 -9.3723 7.8525 21 1 -2.0463 -9.7726 8.7917 22 1 0.3252 -9.3105 8.5801 23 1 -0.8717 -10.3692 6.7561 24 6 1.5273 -2.0814 1.2457 25 1 -0.3633 0.6061 0.8300 26 1 -0.3633 0.4158 -0.9398 27 1 -0.3633 -1.0217 0.1099 28 1 3.1300 1.4425 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 -1.7489 -1.2492 32 1 1.6768 -0.2074 -2.1392 33 1 3.1300 -0.7208 -1.2494 34 1 2.3568 0.6887 2.7726 35 1 0.6521 0.5421 2.2489 36 1 0.6450 -0.8204 4.2333 37 1 2.3023 -1.4346 3.9172 38 1 1.9457 -3.5857 3.6214 39 1 -0.9699 -4.0145 3.5607 40 1 -0.0918 -3.2367 4.8995 41 1 1.8603 -6.2609 5.8514 42 1 2.4231 -4.9871 4.7431 43 1 1.5611 -4.5490 6.2376 44 1 -0.5504 -6.4168 3.0192 45 1 1.1900 -6.0778 2.8637 46 1 0.6274 -7.3514 3.9723 47 1 -1.7604 -5.8022 5.1161 48 1 -0.8826 -5.0251 6.4554 49 1 -2.6621 -6.1934 7.1174 50 1 2.3677 -2.7743 1.2035 51 1 0.8516 -2.2633 0.4099 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594956527.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:09 Heat of formation + Delta-G solvation = -17.788116 kcal Electronic energy + Delta-G solvation = -23588.090081 eV Core-core repulsion = 20521.317709 eV Total energy + Delta-G solvation = -3066.772371 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.19287 -37.74194 -35.66781 -33.20245 -31.90638 -29.61440 -28.30411 -27.58285 -26.92166 -26.49585 -26.34311 -24.67332 -22.40940 -22.08675 -20.75852 -18.85102 -18.22767 -16.65546 -16.41671 -15.87137 -15.29727 -14.62330 -14.41590 -14.31011 -13.80310 -13.74883 -13.55353 -13.15326 -13.01575 -12.71801 -12.61045 -12.33775 -12.25221 -11.94793 -11.91519 -11.84885 -11.61309 -11.42378 -11.29915 -11.18450 -11.05650 -10.92733 -10.89216 -10.79759 -10.67499 -10.54116 -10.09810 -9.98874 -9.78229 -9.26543 -8.44315 -8.35050 -8.26889 -8.09292 -6.28622 -3.96240 3.46469 3.48310 3.66607 3.73108 4.25231 4.54049 4.59389 4.63032 4.66855 4.75362 4.90742 5.05778 5.19056 5.29036 5.31154 5.39699 5.43730 5.46470 5.50518 5.56224 5.60557 5.61941 5.64629 5.67849 5.75643 5.83672 5.87382 5.88551 5.95067 6.05128 6.06447 6.12452 6.20321 6.26443 6.43159 6.59025 6.71654 6.77244 6.84828 7.00020 7.12317 7.14709 7.20465 7.33905 7.43314 7.57613 7.66368 8.31021 8.53966 8.96081 9.74330 11.11294 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.040811 B = 0.002962 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.929168 B = 9449.759561 C = 9542.387657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.095 3.905 3 C -0.138 4.138 4 C -0.139 4.139 5 N -0.517 5.517 6 C 0.042 3.958 7 C -0.161 4.161 8 C 0.070 3.930 9 H 0.078 0.922 10 N -0.675 5.675 11 C 0.071 3.929 12 C -0.052 4.052 13 C -0.128 4.128 14 C -0.115 4.115 15 C 0.021 3.979 16 C -0.587 4.587 17 H 0.053 0.947 18 C 0.011 3.989 19 N -0.918 5.918 20 Si 1.065 2.935 21 H -0.284 1.284 22 H -0.289 1.289 23 H -0.289 1.289 24 C 0.049 3.951 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.342 0.658 39 H 0.063 0.937 40 H 0.022 0.978 41 H 0.065 0.935 42 H 0.035 0.965 43 H 0.038 0.962 44 H 0.037 0.963 45 H 0.044 0.956 46 H 0.055 0.945 47 H 0.005 0.995 48 H 0.002 0.998 49 H 0.267 0.733 50 H 0.084 0.916 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.682 15.826 -14.783 23.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.005 3.995 3 C -0.195 4.195 4 C -0.196 4.196 5 N -0.241 5.241 6 C -0.086 4.086 7 C -0.201 4.201 8 C -0.042 4.042 9 H 0.096 0.904 10 N -0.306 5.306 11 C -0.058 4.058 12 C -0.052 4.052 13 C -0.185 4.185 14 C -0.172 4.172 15 C -0.016 4.016 16 C -0.625 4.625 17 H 0.071 0.929 18 C -0.192 4.192 19 N -0.554 5.554 20 Si 0.894 3.106 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.215 1.215 24 C -0.079 4.079 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.162 0.838 39 H 0.081 0.919 40 H 0.040 0.960 41 H 0.084 0.916 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.063 0.937 46 H 0.074 0.926 47 H 0.023 0.977 48 H 0.020 0.980 49 H 0.078 0.922 50 H 0.102 0.898 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.407 14.299 -14.314 21.909 hybrid contribution -0.288 1.868 -0.180 1.898 sum 8.119 16.166 -14.493 23.180 Atomic orbital electron populations 1.22558 0.97046 1.02501 1.02163 1.21206 0.92390 0.94591 0.91302 1.21853 1.01813 0.94357 1.01503 1.21877 1.01856 1.00267 0.95627 1.63892 1.57026 1.01996 1.01223 1.23011 0.99268 0.96550 0.89735 1.23473 1.01559 0.96965 0.98061 1.22798 0.99181 0.88044 0.94203 0.90396 1.60531 1.06101 1.25496 1.38462 1.22123 0.93857 0.96853 0.92973 1.20485 0.96864 0.92151 0.95699 1.21755 0.95967 1.02303 0.98477 1.21586 0.99966 0.98891 0.96777 1.19241 0.92636 0.96763 0.93002 1.22023 1.09278 1.03423 1.27812 0.92905 1.25788 0.93720 1.04363 0.95292 1.70777 1.24893 1.16016 1.43762 0.83594 0.75641 0.75059 0.76312 1.20939 1.21559 1.21516 1.22856 0.98896 0.89601 0.96582 0.92395 0.92128 0.91946 0.91860 0.92407 0.92728 0.92342 0.92447 0.91845 0.90639 0.93149 0.91094 0.90612 0.83775 0.91870 0.95986 0.91588 0.94652 0.94253 0.94356 0.93731 0.92568 0.97722 0.97956 0.92250 0.89814 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.60 7.88 37.16 0.29 -1.30 16 2 C 0.09 0.84 0.67 -131.60 -0.09 0.75 16 3 C -0.14 -1.07 8.34 37.16 0.31 -0.76 16 4 C -0.14 -1.15 8.36 37.16 0.31 -0.84 16 5 N -0.52 -5.31 5.00 -215.51 -1.08 -6.39 16 6 C 0.04 0.42 5.14 -2.19 -0.01 0.41 16 7 C -0.16 -1.78 6.68 -24.48 -0.16 -1.95 16 8 C 0.07 0.85 3.24 -65.89 -0.21 0.64 16 9 H 0.08 1.01 7.86 -51.93 -0.41 0.60 16 10 N -0.67 -9.64 5.50 -104.80 -0.58 -10.22 16 11 C 0.07 1.21 4.52 -3.82 -0.02 1.20 16 12 C -0.05 -1.03 0.60 -154.51 -0.09 -1.13 16 13 C -0.13 -2.41 7.89 37.16 0.29 -2.11 16 14 C -0.11 -2.26 8.06 37.16 0.30 -1.96 16 15 C 0.02 0.53 3.35 -27.88 -0.09 0.44 16 16 C -0.59 -16.29 7.65 -34.44 -0.26 -16.56 16 17 H 0.05 1.44 5.68 -52.49 -0.30 1.14 16 18 C 0.01 0.33 5.46 -17.82 -0.10 0.23 16 19 N -0.92 -28.30 13.65 55.43 0.76 -27.54 16 20 Si 1.07 25.48 29.90 -169.99 -5.08 20.40 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.05 0.55 5.26 -2.84 -0.01 0.53 16 25 H 0.06 0.51 6.31 -51.93 -0.33 0.18 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.60 6.11 -51.93 -0.32 0.28 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.42 6.97 -51.93 -0.36 0.06 16 31 H 0.06 0.52 6.56 -51.93 -0.34 0.18 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.48 5.48 -51.93 -0.28 0.20 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.87 7.79 -51.93 -0.40 0.46 16 38 H 0.34 4.81 6.30 -39.29 -0.25 4.56 16 39 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 1.36 6.62 -51.93 -0.34 1.02 16 42 H 0.03 0.56 6.57 -51.93 -0.34 0.22 16 43 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.04 0.78 7.60 -51.93 -0.39 0.39 16 46 H 0.06 1.19 6.62 -51.93 -0.34 0.85 16 47 H 0.00 0.12 8.01 -51.93 -0.42 -0.29 16 48 H 0.00 0.06 8.01 -51.93 -0.42 -0.36 16 49 H 0.27 8.23 7.22 -40.82 -0.29 7.93 16 50 H 0.08 1.03 8.03 -51.93 -0.42 0.61 16 51 H 0.06 0.68 4.79 -51.93 -0.25 0.44 16 LS Contribution 370.50 15.07 5.58 5.58 Total: -1.00 -29.17 370.50 -9.60 -38.77 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -9.65 Total: 1.82 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: 0.45 Total: -22.42 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: -0.90 Total: -44.15 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.08 Total: 20.40 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.17 -9.60 -38.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594956527.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.982 kcal (2) G-P(sol) polarization free energy of solvation -29.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds