Wall clock time and date at job start Tue Mar 31 2020 05:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00164 * 2 1 4 4 H 1.09004 * 109.47070 * 33.68653 * 3 2 1 5 5 C 1.53003 * 109.47632 * 153.68914 * 3 2 1 6 6 N 1.46902 * 109.47082 * 300.08828 * 5 3 2 7 7 C 1.46896 * 110.99672 * 189.99504 * 6 5 3 8 8 C 1.53239 * 109.33659 * 187.25289 * 7 6 5 9 9 N 1.47084 * 108.52233 * 306.17118 * 8 7 6 10 10 C 1.36935 * 120.88081 * 231.18392 * 9 8 7 11 11 H 1.07998 * 119.99988 * 30.70272 * 10 9 8 12 12 C 1.38812 * 119.99590 * 210.42069 * 10 9 8 13 13 N 1.31614 * 120.00257 * 12.64023 * 12 10 9 14 14 Si 1.86801 * 119.99449 * 192.63464 * 12 10 9 15 15 H 1.48505 * 109.47371 * 60.00619 * 14 12 10 16 16 H 1.48506 * 109.47113 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47451 * 300.00208 * 14 12 10 18 18 C 1.47078 * 118.23343 * 51.45998 * 9 8 7 19 19 C 1.46892 * 110.99748 * 314.29994 * 6 5 3 20 20 C 1.53003 * 109.46798 * 273.69172 * 3 2 1 21 21 C 1.54265 * 110.03166 * 301.67304 * 20 3 2 22 22 C 1.54895 * 104.19685 * 217.10603 * 21 20 3 23 23 C 1.54886 * 102.74548 * 37.94479 * 22 21 20 24 24 C 1.53879 * 110.03058 * 184.50996 * 20 3 2 25 25 H 1.08997 * 109.46989 * 184.91153 * 1 2 3 26 26 H 1.08997 * 109.47194 * 304.91247 * 1 2 3 27 27 H 1.08999 * 109.46954 * 64.91006 * 1 2 3 28 28 H 1.08997 * 109.47304 * 180.08439 * 5 3 2 29 29 H 1.09005 * 109.46535 * 60.08713 * 5 3 2 30 30 H 1.08997 * 109.49164 * 67.29814 * 7 6 5 31 31 H 1.08995 * 109.49606 * 307.21587 * 7 6 5 32 32 H 1.08999 * 109.63127 * 186.46468 * 8 7 6 33 33 H 1.09001 * 109.79197 * 65.97848 * 8 7 6 34 34 H 0.97001 * 120.00140 * 180.02562 * 13 12 10 35 35 H 1.08998 * 109.62973 * 68.25388 * 18 9 8 36 36 H 1.09001 * 109.62953 * 188.83208 * 18 9 8 37 37 H 1.09004 * 109.49661 * 292.70283 * 19 6 5 38 38 H 1.09003 * 109.49568 * 52.76255 * 19 6 5 39 39 H 1.08997 * 110.01914 * 63.11883 * 20 3 2 40 40 H 1.09003 * 110.48788 * 335.78704 * 21 20 3 41 41 H 1.08995 * 110.48311 * 98.42803 * 21 20 3 42 42 H 1.09000 * 110.75520 * 279.63290 * 22 21 20 43 43 H 1.08997 * 110.91329 * 156.33087 * 22 21 20 44 44 H 1.08998 * 110.48344 * 203.37896 * 23 22 21 45 45 H 1.09000 * 110.60283 * 80.78963 * 23 22 21 46 46 H 1.09006 * 110.02956 * 238.56568 * 24 20 3 47 47 H 1.08996 * 110.03548 * 359.97438 * 24 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3768 1.9852 0.5700 5 6 3.3990 1.2455 0.6394 6 7 3.2815 0.7599 2.0208 7 6 4.5522 0.9116 2.7419 8 6 4.4428 0.2326 4.1113 9 7 3.2645 0.7717 4.8073 10 6 3.3625 1.2533 6.0854 11 1 4.2840 1.7037 6.4236 12 6 2.2755 1.1677 6.9445 13 7 1.2448 0.4126 6.6286 14 14 2.2758 2.1240 8.5491 15 1 2.3910 3.5761 8.2600 16 1 1.0101 1.8635 9.2809 17 1 3.4266 1.6925 9.3825 18 6 1.9770 0.7741 4.0962 19 6 2.1848 1.4372 2.7253 20 6 2.1328 1.8090 -1.4396 21 6 2.9928 0.8335 -2.2693 22 6 3.8077 1.7532 -3.2123 23 6 4.1359 2.9663 -2.3069 24 6 2.8596 3.1651 -1.4634 25 1 -0.3633 -1.0239 0.0880 26 1 -0.3633 0.5881 0.8427 27 1 -0.3633 0.4358 -0.9307 28 1 3.8417 2.2415 0.6407 29 1 4.0328 0.5669 0.0684 30 1 4.7692 1.9711 2.8777 31 1 5.3538 0.4464 2.1683 32 1 5.3395 0.4396 4.6954 33 1 4.3307 -0.8439 3.9816 34 1 0.4851 0.3531 7.2287 35 1 1.6310 -0.2507 3.9620 36 1 1.2427 1.3392 4.6703 37 1 2.4347 2.4895 2.8613 38 1 1.2694 1.3535 2.1394 39 1 1.1433 1.9079 -1.8858 40 1 3.6595 0.2658 -1.6201 41 1 2.3578 0.1616 -2.8467 42 1 3.2055 2.0609 -4.0671 43 1 4.7216 1.2596 -3.5430 44 1 4.3351 3.8508 -2.9118 45 1 4.9876 2.7454 -1.6636 46 1 2.2231 3.9219 -1.9222 47 1 3.1246 3.4647 -0.4495 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595370103.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:49 Heat of formation + Delta-G solvation = -20.257635 kcal Electronic energy + Delta-G solvation = -24032.473879 eV Core-core repulsion = 20829.761326 eV Total energy + Delta-G solvation = -3202.712552 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.76500 -37.60952 -36.67168 -34.26754 -31.66145 -30.34213 -29.83830 -28.79090 -27.55239 -26.37871 -24.85306 -23.37593 -22.39170 -21.63162 -20.73149 -19.20477 -18.76211 -16.97821 -16.26225 -16.14071 -15.69167 -14.93436 -14.77256 -14.36230 -14.21321 -14.00764 -13.66550 -13.38344 -13.25577 -13.19456 -12.79120 -12.65386 -11.83282 -11.64976 -11.51566 -11.39513 -11.19493 -11.10584 -11.01822 -10.96489 -10.79407 -10.70042 -10.60500 -10.53837 -10.24912 -10.19892 -9.92544 -9.63355 -9.47160 -9.23163 -8.45688 -7.62388 -6.54261 -5.72860 -3.18594 3.40377 3.45519 3.46621 3.91522 4.35845 4.52897 4.57538 4.59521 4.69062 5.05257 5.24361 5.28936 5.36771 5.41298 5.45009 5.52373 5.53060 5.56071 5.58728 5.62665 5.62854 5.78576 5.81084 5.86060 5.92404 5.98878 6.01959 6.04139 6.07692 6.19234 6.24044 6.25078 6.30291 6.40829 6.44289 6.62282 6.78977 7.03660 7.33107 7.42572 7.73435 7.76305 7.80321 7.89979 8.51502 9.27576 9.89752 10.51060 11.35544 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027114 B = 0.004171 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.429321 B = 6711.992554 C = 7086.683353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.360 6.360 3 C 0.095 3.905 4 H 0.062 0.938 5 C 0.058 3.942 6 N -0.522 5.522 7 C 0.045 3.955 8 C 0.149 3.851 9 N -0.595 5.595 10 C -0.253 4.253 11 H 0.063 0.937 12 C 0.004 3.996 13 N -0.904 5.904 14 Si 0.903 3.097 15 H -0.285 1.285 16 H -0.290 1.290 17 H -0.283 1.283 18 C 0.183 3.817 19 C 0.032 3.968 20 C -0.115 4.115 21 C -0.112 4.112 22 C -0.126 4.126 23 C -0.123 4.123 24 C -0.123 4.123 25 H 0.083 0.917 26 H 0.042 0.958 27 H 0.031 0.969 28 H 0.040 0.960 29 H 0.077 0.923 30 H 0.024 0.976 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.026 0.974 34 H 0.254 0.746 35 H 0.027 0.973 36 H 0.083 0.917 37 H 0.019 0.981 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.066 0.934 46 H 0.061 0.939 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.631 3.612 -18.695 19.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.036 3.964 4 H 0.080 0.920 5 C -0.070 4.070 6 N -0.247 5.247 7 C -0.085 4.085 8 C 0.023 3.977 9 N -0.319 5.319 10 C -0.383 4.383 11 H 0.080 0.920 12 C -0.195 4.195 13 N -0.549 5.549 14 Si 0.733 3.267 15 H -0.211 1.211 16 H -0.216 1.216 17 H -0.209 1.209 18 C 0.057 3.943 19 C -0.097 4.097 20 C -0.134 4.134 21 C -0.149 4.149 22 C -0.164 4.164 23 C -0.161 4.161 24 C -0.161 4.161 25 H 0.101 0.899 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.096 0.904 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.044 0.956 34 H 0.064 0.936 35 H 0.045 0.955 36 H 0.101 0.899 37 H 0.037 0.963 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.476 2.912 -18.572 18.857 hybrid contribution -0.192 1.619 0.819 1.825 sum 1.284 4.532 -17.753 18.367 Atomic orbital electron populations 1.22734 0.82056 1.02595 0.99185 1.88021 1.18596 1.26537 1.94693 1.22271 0.95037 0.85385 0.93673 0.92022 1.22310 0.95318 0.98428 0.90980 1.61954 1.05297 1.57131 1.00324 1.22611 0.90458 0.98518 0.96866 1.20970 0.91279 0.95515 0.89983 1.44084 1.04098 1.71049 1.12639 1.19136 0.99577 1.31633 0.87938 0.91951 1.25126 0.98301 0.98465 0.97577 1.69987 1.08093 1.39310 1.37463 0.86366 0.76905 0.79847 0.83570 1.21120 1.21609 1.20880 1.20896 0.88674 0.97947 0.86819 1.23060 0.92943 0.95489 0.98190 1.22291 0.99489 0.95172 0.96478 1.22357 0.98165 0.97090 0.97319 1.22518 0.99737 0.96322 0.97796 1.22339 0.97734 0.98043 0.97954 1.22244 0.96647 0.96474 1.00693 0.89872 0.93987 0.95028 0.94214 0.90435 0.95734 0.92171 0.92803 0.95646 0.93613 0.95478 0.89866 0.96269 0.92184 0.91215 0.90552 0.91947 0.91957 0.91779 0.92029 0.91569 0.92019 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.73 101.05 1.08 1.48 16 2 O -0.36 -5.51 9.66 -35.23 -0.34 -5.85 16 3 C 0.09 1.30 1.16 -26.73 -0.03 1.27 16 4 H 0.06 0.89 5.81 -51.93 -0.30 0.59 16 5 C 0.06 0.87 4.41 -3.82 -0.02 0.85 16 6 N -0.52 -9.84 4.64 -234.03 -1.09 -10.92 16 7 C 0.04 0.85 5.58 -3.70 -0.02 0.83 16 8 C 0.15 3.33 6.69 -3.60 -0.02 3.30 16 9 N -0.60 -15.61 3.02 -171.73 -0.52 -16.13 16 10 C -0.25 -7.13 9.62 -15.06 -0.14 -7.28 16 11 H 0.06 1.72 7.86 -52.49 -0.41 1.31 16 12 C 0.00 0.11 5.02 -17.43 -0.09 0.02 16 13 N -0.90 -26.70 11.15 55.49 0.62 -26.08 16 14 Si 0.90 21.96 29.57 -169.99 -5.03 16.93 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 C 0.18 4.58 5.40 -3.36 -0.02 4.56 16 19 C 0.03 0.66 5.06 -3.47 -0.02 0.64 16 20 C -0.11 -1.28 2.94 -89.50 -0.26 -1.54 16 21 C -0.11 -1.19 5.83 -25.07 -0.15 -1.34 16 22 C -0.13 -1.13 6.91 -24.74 -0.17 -1.31 16 23 C -0.12 -1.13 6.83 -25.07 -0.17 -1.30 16 24 C -0.12 -1.25 5.91 -25.61 -0.15 -1.40 16 25 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.04 0.54 7.34 -51.93 -0.38 0.16 16 27 H 0.03 0.33 7.81 -51.93 -0.41 -0.07 16 28 H 0.04 0.58 6.15 -51.93 -0.32 0.26 16 29 H 0.08 1.14 6.17 -51.93 -0.32 0.82 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 32 H 0.05 1.15 7.95 -51.93 -0.41 0.73 16 33 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.08 2.28 6.25 -51.93 -0.32 1.96 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 1.13 4.83 -51.93 -0.25 0.88 16 39 H 0.07 0.75 7.81 -51.93 -0.41 0.34 16 40 H 0.08 0.91 5.85 -51.93 -0.30 0.61 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.77 6.01 -51.93 -0.31 0.46 16 LS Contribution 347.27 15.07 5.23 5.23 Total: -1.00 -30.42 347.27 -9.66 -40.08 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -8.36 Total: -2.05 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -0.18 Total: -1.22 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -0.99 Total: -53.13 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.34 Total: -5.85 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.42 -9.66 -40.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595370103.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.818 kcal (2) G-P(sol) polarization free energy of solvation -30.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds