Wall clock time and date at job start Tue Mar 31 2020 05:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.47953 * 111.00375 * 2 1 4 4 C 1.54145 * 107.04065 * 145.71681 * 3 2 1 5 5 C 1.53933 * 104.96955 * 358.36598 * 4 3 2 6 6 C 1.48659 * 111.00219 * 117.52067 * 2 1 3 7 7 C 1.52326 * 110.52613 * 220.42540 * 5 4 3 8 8 C 1.53265 * 109.23255 * 292.70601 * 7 5 4 9 9 C 1.53044 * 109.17018 * 303.50121 * 8 7 5 10 10 N 1.46853 * 109.64049 * 59.79170 * 9 8 7 11 11 C 1.46909 * 110.99952 * 173.64797 * 10 9 8 12 12 C 1.52999 * 109.47006 * 48.19181 * 11 10 9 13 13 O 1.42907 * 109.47079 * 66.35133 * 12 11 10 14 14 C 1.42899 * 114.00230 * 179.97438 * 13 12 11 15 15 C 1.50694 * 109.47140 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00422 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00016 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00172 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 120.00102 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47129 * 89.99734 * 19 17 15 21 21 H 1.48495 * 109.47041 * 210.00355 * 19 17 15 22 22 H 1.48500 * 109.46831 * 329.99939 * 19 17 15 23 23 C 1.46980 * 111.12017 * 297.68461 * 10 9 8 24 24 H 1.09005 * 109.47414 * 60.11841 * 1 2 3 25 25 H 1.08992 * 109.47348 * 180.12428 * 1 2 3 26 26 H 1.08999 * 109.46785 * 300.12454 * 1 2 3 27 27 H 1.09003 * 109.91953 * 26.37101 * 3 2 1 28 28 H 1.09000 * 110.09093 * 265.15712 * 3 2 1 29 29 H 1.09004 * 110.33923 * 117.23833 * 4 3 2 30 30 H 1.08994 * 110.34114 * 239.49167 * 4 3 2 31 31 H 1.08998 * 110.67129 * 319.37906 * 6 2 1 32 32 H 1.08997 * 110.67575 * 82.35860 * 6 2 1 33 33 H 1.08996 * 109.50498 * 52.63254 * 7 5 4 34 34 H 1.09002 * 109.50318 * 172.77932 * 7 5 4 35 35 H 1.09002 * 109.51722 * 183.59563 * 8 7 5 36 36 H 1.08994 * 109.57087 * 63.44165 * 8 7 5 37 37 H 1.09001 * 109.44712 * 299.73697 * 9 8 7 38 38 H 1.09000 * 109.41208 * 179.82291 * 9 8 7 39 39 H 1.08999 * 109.47114 * 168.19388 * 11 10 9 40 40 H 1.08997 * 109.46915 * 288.19708 * 11 10 9 41 41 H 1.09003 * 109.47350 * 186.34557 * 12 11 10 42 42 H 1.09001 * 109.47625 * 306.35382 * 12 11 10 43 43 H 1.09001 * 109.47074 * 300.00059 * 14 13 12 44 44 H 1.09003 * 109.46762 * 60.00098 * 14 13 12 45 45 H 0.97004 * 120.00193 * 179.97438 * 18 17 15 46 46 H 1.08996 * 109.44588 * 300.42605 * 23 10 9 47 47 H 1.09002 * 109.44380 * 180.52300 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9992 1.3812 0.0000 4 6 3.2980 1.3665 0.8302 5 6 3.4373 -0.0846 1.3247 6 6 2.0017 -0.6413 1.2308 7 6 3.9233 -0.1126 2.7681 8 6 5.3619 0.4127 2.8267 9 6 6.2408 -0.4241 1.8942 10 7 5.7339 -0.3272 0.5193 11 6 6.6402 -0.9954 -0.4243 12 6 6.9988 -2.3837 0.1094 13 8 5.8310 -3.2074 0.1171 14 6 6.0579 -4.5330 0.6002 15 6 4.7662 -5.3083 0.5652 16 1 3.8624 -4.8362 0.2092 17 6 4.7381 -6.6205 0.9876 18 7 3.6109 -7.2973 0.9566 19 14 6.3011 -7.4370 1.6039 20 1 6.4242 -7.2280 3.0690 21 1 6.2466 -8.8924 1.3142 22 1 7.4751 -6.8395 0.9184 23 6 4.3725 -0.8717 0.4173 24 1 -0.3634 0.5120 -0.8911 25 1 -0.3633 -1.0276 0.0022 26 1 -0.3633 0.5158 0.8889 27 1 1.2752 2.0570 0.4552 28 1 2.2141 1.6998 -1.0200 29 1 4.1496 1.6375 0.2061 30 1 3.2147 2.0487 1.6761 31 1 1.4170 -0.3466 2.1022 32 1 2.0131 -1.7261 1.1255 33 1 3.2800 0.5187 3.3810 34 1 3.8938 -1.1360 3.1422 35 1 5.7367 0.3351 3.8473 36 1 5.3832 1.4551 2.5091 37 1 6.2219 -1.4656 2.2153 38 1 7.2646 -0.0518 1.9304 39 1 6.1487 -1.0940 -1.3922 40 1 7.5485 -0.4035 -0.5366 41 1 7.7570 -2.8345 -0.5311 42 1 7.3868 -2.2940 1.1240 43 1 6.7965 -5.0281 -0.0304 44 1 6.4267 -4.4881 1.6250 45 1 3.5912 -8.2206 1.2534 46 1 4.3766 -1.9185 0.7209 47 1 4.0273 -0.7949 -0.6138 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595504992.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:03 Heat of formation + Delta-G solvation = -38.779409 kcal Electronic energy + Delta-G solvation = -24153.842904 eV Core-core repulsion = 20950.327188 eV Total energy + Delta-G solvation = -3203.515716 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.19305 -37.92502 -36.29078 -33.74513 -32.54876 -31.47749 -29.50310 -28.99449 -27.40359 -26.44460 -24.25993 -23.88859 -22.20457 -21.85883 -20.98627 -20.22501 -18.17958 -16.86280 -16.10560 -15.83265 -15.44822 -15.33744 -14.91886 -14.61215 -14.26770 -13.92912 -13.82178 -13.60382 -13.24959 -12.87564 -12.70424 -12.52670 -12.35875 -12.11379 -11.92774 -11.61734 -11.42011 -11.36114 -11.21107 -11.00011 -10.94128 -10.82199 -10.64658 -10.53661 -10.26430 -9.97808 -9.94188 -9.85702 -9.19908 -8.86197 -8.49332 -8.28694 -7.79018 -6.13227 -4.12192 3.22148 3.29672 3.30969 4.12325 4.22773 4.33515 4.65532 4.76941 4.81653 5.01441 5.17329 5.18125 5.25039 5.31483 5.43531 5.46712 5.50625 5.51379 5.59768 5.69212 5.75042 5.79056 5.84928 5.88548 5.91606 5.97715 6.02973 6.06590 6.08266 6.13397 6.18188 6.25179 6.32165 6.43406 6.48929 6.57978 6.64459 6.86986 6.97889 7.02160 7.15164 7.44352 7.48066 7.58558 7.98287 8.63499 8.98355 9.46251 10.99581 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016109 B = 0.005364 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.746946 B = 5218.510821 C = 6166.366937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.519 5.519 3 C 0.036 3.964 4 C -0.114 4.114 5 C -0.053 4.053 6 C 0.043 3.957 7 C -0.108 4.108 8 C -0.111 4.111 9 C 0.049 3.951 10 N -0.531 5.531 11 C 0.060 3.940 12 C 0.018 3.982 13 O -0.373 6.373 14 C 0.168 3.832 15 C -0.516 4.516 16 H 0.083 0.917 17 C 0.073 3.927 18 N -0.894 5.894 19 Si 0.874 3.126 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.267 1.267 23 C 0.067 3.933 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.022 0.978 27 H 0.036 0.964 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.044 0.956 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.039 0.961 42 H 0.042 0.958 43 H 0.001 0.999 44 H -0.006 1.006 45 H 0.266 0.734 46 H 0.077 0.923 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.304 18.014 1.781 18.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.242 5.242 3 C -0.092 4.092 4 C -0.152 4.152 5 C -0.054 4.054 6 C -0.085 4.085 7 C -0.146 4.146 8 C -0.149 4.149 9 C -0.080 4.080 10 N -0.254 5.254 11 C -0.069 4.069 12 C -0.061 4.061 13 O -0.292 6.292 14 C 0.093 3.907 15 C -0.554 4.554 16 H 0.101 0.899 17 C -0.129 4.129 18 N -0.532 5.532 19 Si 0.701 3.299 20 H -0.200 1.200 21 H -0.208 1.208 22 H -0.192 1.192 23 C -0.060 4.060 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.041 0.959 27 H 0.054 0.946 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.108 0.892 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.019 0.981 44 H 0.012 0.988 45 H 0.076 0.924 46 H 0.095 0.905 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.155 18.111 1.151 18.184 hybrid contribution 0.750 -1.163 1.412 1.978 sum 1.906 16.948 2.563 17.246 Atomic orbital electron populations 1.22496 0.88308 1.02244 1.00093 1.64708 1.07594 1.14633 1.37281 1.22920 0.96046 0.89758 1.00512 1.22385 0.97535 0.96138 0.99118 1.20925 0.94220 0.95088 0.95124 1.23260 0.94044 1.00785 0.90394 1.21495 0.96221 1.01551 0.95375 1.21550 0.94983 0.99945 0.98392 1.22105 0.97797 0.98997 0.89054 1.62226 1.02803 1.55407 1.04963 1.22225 0.96985 0.90787 0.96871 1.23164 0.90436 0.93052 0.99448 1.87953 1.30355 1.24555 1.86323 1.20587 0.98109 0.79852 0.92171 1.20865 0.94841 0.96113 1.43607 0.89902 1.24755 0.96117 0.96735 0.95251 1.69874 1.25571 1.10364 1.47435 0.86885 0.84217 0.79166 0.79680 1.20014 1.20765 1.19208 1.22087 0.86051 0.98178 0.99674 0.91673 0.91125 0.95901 0.94593 0.90764 0.89654 0.92357 0.93994 0.89162 0.92421 0.91549 0.92074 0.91536 0.93818 0.91667 0.90141 0.90172 0.94320 0.94027 0.98137 0.98793 0.92396 0.90521 0.90503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.39 60.06 0.56 0.77 16 2 N -0.52 -7.24 5.52 -238.92 -1.32 -8.56 16 3 C 0.04 0.43 6.71 -2.65 -0.02 0.41 16 4 C -0.11 -1.38 5.20 -25.65 -0.13 -1.52 16 5 C -0.05 -0.73 0.57 -154.10 -0.09 -0.82 16 6 C 0.04 0.63 5.44 -2.19 -0.01 0.62 16 7 C -0.11 -1.41 4.64 -26.94 -0.13 -1.54 16 8 C -0.11 -1.33 5.92 -26.57 -0.16 -1.49 16 9 C 0.05 0.67 4.44 -3.83 -0.02 0.65 16 10 N -0.53 -7.76 4.30 -235.06 -1.01 -8.77 16 11 C 0.06 0.87 6.01 -3.82 -0.02 0.85 16 12 C 0.02 0.31 5.52 37.16 0.21 0.52 16 13 O -0.37 -8.36 7.54 -35.23 -0.27 -8.62 16 14 C 0.17 4.23 4.76 36.00 0.17 4.40 16 15 C -0.52 -15.15 9.99 -34.44 -0.34 -15.49 16 16 H 0.08 2.66 8.06 -52.49 -0.42 2.24 16 17 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 18 N -0.89 -27.43 13.96 55.43 0.77 -26.65 16 19 Si 0.87 21.42 27.47 -169.99 -4.67 16.75 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 23 C 0.07 1.10 3.60 -4.17 -0.02 1.09 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.02 0.25 8.00 -51.93 -0.42 -0.17 16 27 H 0.04 0.39 7.73 -51.93 -0.40 -0.01 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.08 1.09 7.43 -51.93 -0.39 0.71 16 30 H 0.06 0.65 7.75 -51.93 -0.40 0.25 16 31 H 0.04 0.56 7.84 -51.93 -0.41 0.16 16 32 H 0.09 1.53 8.03 -51.93 -0.42 1.11 16 33 H 0.06 0.67 8.03 -51.93 -0.42 0.25 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.76 7.60 -51.93 -0.39 0.36 16 37 H 0.04 0.71 6.48 -51.93 -0.34 0.38 16 38 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 39 H 0.08 1.22 7.89 -51.93 -0.41 0.81 16 40 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.04 0.70 6.05 -51.93 -0.31 0.38 16 43 H 0.00 0.02 7.20 -51.93 -0.37 -0.35 16 44 H -0.01 -0.14 7.57 -51.93 -0.39 -0.53 16 45 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 46 H 0.08 1.57 5.72 -51.93 -0.30 1.27 16 47 H 0.08 1.36 7.98 -51.93 -0.41 0.95 16 LS Contribution 349.99 15.07 5.27 5.27 Total: -1.00 -30.41 349.99 -10.06 -40.46 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -8.75 Total: -0.38 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -0.09 Total: -9.51 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: -1.56 Total: -43.98 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -0.27 Total: -8.62 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.41 -10.06 -40.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595504992.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.684 kcal (2) G-P(sol) polarization free energy of solvation -30.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds