Wall clock time and date at job start Tue Mar 31 2020 05:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47961 * 111.00177 * 2 1 4 4 C 1.54144 * 107.03817 * 214.27993 * 3 2 1 5 5 C 1.53919 * 104.97503 * 1.62957 * 4 3 2 6 6 C 1.48655 * 111.00128 * 242.48642 * 2 1 3 7 7 C 1.52312 * 110.57972 * 139.56505 * 5 4 3 8 8 C 1.53265 * 109.22622 * 179.05699 * 7 5 4 9 9 C 1.53045 * 109.17456 * 303.51508 * 8 7 5 10 10 N 1.46860 * 109.66305 * 59.75046 * 9 8 7 11 11 C 1.46901 * 110.99727 * 173.67683 * 10 9 8 12 12 C 1.53005 * 109.46757 * 199.80940 * 11 10 9 13 13 O 1.42900 * 109.46884 * 64.59811 * 12 11 10 14 14 C 1.42894 * 113.99768 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.47203 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99548 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00087 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00263 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99910 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47173 * 90.00264 * 19 17 15 21 21 H 1.48508 * 109.47056 * 210.00039 * 19 17 15 22 22 H 1.48497 * 109.47263 * 329.99646 * 19 17 15 23 23 C 1.46994 * 111.11761 * 297.71674 * 10 9 8 24 24 H 1.09004 * 109.47012 * 59.87356 * 1 2 3 25 25 H 1.09004 * 109.47167 * 299.87448 * 1 2 3 26 26 H 1.08999 * 109.47200 * 179.87668 * 1 2 3 27 27 H 1.09000 * 109.91973 * 333.62514 * 3 2 1 28 28 H 1.08996 * 109.92113 * 94.93551 * 3 2 1 29 29 H 1.08997 * 110.34094 * 120.49530 * 4 3 2 30 30 H 1.08998 * 110.34436 * 242.65051 * 4 3 2 31 31 H 1.08990 * 110.67700 * 277.48447 * 6 2 1 32 32 H 1.09001 * 110.67209 * 40.63338 * 6 2 1 33 33 H 1.09000 * 109.51469 * 298.98634 * 7 5 4 34 34 H 1.09004 * 109.51279 * 59.13412 * 7 5 4 35 35 H 1.08993 * 109.52284 * 183.59642 * 8 7 5 36 36 H 1.09008 * 109.56799 * 63.45019 * 8 7 5 37 37 H 1.09004 * 109.43455 * 299.69518 * 9 8 7 38 38 H 1.08993 * 109.43976 * 179.81248 * 9 8 7 39 39 H 1.08996 * 109.47358 * 319.81132 * 11 10 9 40 40 H 1.09000 * 109.46786 * 79.81360 * 11 10 9 41 41 H 1.09002 * 109.46679 * 184.59644 * 12 11 10 42 42 H 1.08999 * 109.47131 * 304.60025 * 12 11 10 43 43 H 1.08999 * 109.47415 * 300.00097 * 14 13 12 44 44 H 1.09003 * 109.47537 * 60.00261 * 14 13 12 45 45 H 0.96999 * 119.99962 * 180.02562 * 18 17 15 46 46 H 1.09001 * 109.44460 * 300.43072 * 23 10 9 47 47 H 1.08998 * 109.41800 * 180.51040 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.2980 1.3665 -0.8301 5 6 3.4375 -0.0844 -1.3245 6 6 2.0017 -0.6411 -1.2308 7 6 3.9233 -0.1139 -2.7678 8 6 4.0737 -1.5705 -3.2201 9 6 5.0229 -2.2980 -2.2651 10 7 4.4798 -2.2559 -0.9012 11 6 5.2894 -3.0722 0.0132 12 6 4.4661 -3.4130 1.2570 13 8 3.3580 -4.2347 0.8843 14 6 2.5205 -4.6124 1.9788 15 6 1.3910 -5.4727 1.4735 16 1 1.3202 -5.7079 0.4218 17 6 0.4482 -5.9596 2.3538 18 7 -0.5372 -6.7108 1.9130 19 14 0.5705 -5.5522 4.1728 20 1 -0.1782 -4.3002 4.4511 21 1 -0.0099 -6.6633 4.9690 22 1 1.9965 -5.3692 4.5444 23 6 4.3716 -0.8723 -0.4167 24 1 -0.3633 0.5158 -0.8889 25 1 -0.3634 0.5119 0.8911 26 1 -0.3633 -1.0276 -0.0022 27 1 1.2752 2.0571 -0.4553 28 1 2.2147 1.6964 1.0209 29 1 3.2147 2.0486 -1.6762 30 1 4.1494 1.6395 -0.2066 31 1 2.0157 -1.7257 -1.1247 32 1 1.4171 -0.3462 -2.1023 33 1 3.1994 0.3927 -3.4060 34 1 4.8871 0.3904 -2.8379 35 1 4.4817 -1.5979 -4.2304 36 1 3.0993 -2.0591 -3.2075 37 1 5.9981 -1.8112 -2.2824 38 1 5.1304 -3.3356 -2.5809 39 1 5.5875 -3.9927 -0.4887 40 1 6.1785 -2.5145 0.3075 41 1 5.0917 -3.9487 1.9711 42 1 4.0994 -2.4935 1.7132 43 1 3.1058 -5.1730 2.7076 44 1 2.1134 -3.7179 2.4504 45 1 -1.2006 -7.0530 2.5324 46 1 5.3580 -0.4084 -0.4204 47 1 3.9751 -0.8739 0.5986 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595504993.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:05 Heat of formation + Delta-G solvation = -37.667017 kcal Electronic energy + Delta-G solvation = -24019.822541 eV Core-core repulsion = 20816.355061 eV Total energy + Delta-G solvation = -3203.467480 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.27959 -37.56222 -36.38868 -33.77662 -32.47992 -31.88101 -29.25886 -29.10225 -27.22542 -26.61092 -24.51252 -23.99320 -21.71945 -21.60474 -21.15911 -20.41913 -18.51378 -16.73563 -16.20308 -15.82837 -15.42121 -15.19282 -14.94620 -14.39963 -14.28018 -14.16377 -13.86957 -13.60083 -13.21389 -12.91506 -12.76393 -12.60408 -12.46164 -12.22158 -12.07634 -11.65850 -11.41424 -11.29421 -11.23287 -11.15620 -10.87024 -10.79222 -10.66395 -10.48401 -10.32719 -10.16996 -10.00687 -9.74692 -9.03262 -8.68822 -8.29120 -8.19825 -7.96270 -6.01176 -3.98234 3.32731 3.38785 3.41463 4.01001 4.19350 4.45345 4.63466 4.64316 4.72871 4.81265 5.03254 5.09882 5.23319 5.27256 5.30965 5.41590 5.49402 5.51291 5.55190 5.60882 5.63364 5.69423 5.71960 5.79313 5.81384 5.88929 5.93210 5.97379 6.01602 6.02778 6.08284 6.11819 6.18324 6.32937 6.34568 6.41705 6.56820 6.77552 7.10359 7.16652 7.22464 7.35347 7.37678 7.73710 8.20420 8.82949 9.12393 9.59800 11.12122 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016108 B = 0.005342 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.833227 B = 5240.070390 C = 6077.187251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.516 5.516 3 C 0.034 3.966 4 C -0.122 4.122 5 C -0.056 4.056 6 C 0.052 3.948 7 C -0.105 4.105 8 C -0.117 4.117 9 C 0.058 3.942 10 N -0.520 5.520 11 C 0.063 3.937 12 C 0.066 3.934 13 O -0.363 6.363 14 C 0.169 3.831 15 C -0.509 4.509 16 H 0.082 0.918 17 C 0.071 3.929 18 N -0.899 5.899 19 Si 0.874 3.126 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.267 1.267 23 C 0.077 3.923 24 H 0.021 0.979 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.035 0.965 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.024 0.976 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.039 0.961 41 H 0.036 0.964 42 H 0.039 0.961 43 H -0.004 1.004 44 H -0.002 1.002 45 H 0.264 0.736 46 H 0.022 0.978 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.463 17.176 -7.292 21.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.239 5.239 3 C -0.094 4.094 4 C -0.161 4.161 5 C -0.057 4.057 6 C -0.075 4.075 7 C -0.143 4.143 8 C -0.155 4.155 9 C -0.070 4.070 10 N -0.244 5.244 11 C -0.064 4.064 12 C -0.012 4.012 13 O -0.281 6.281 14 C 0.094 3.906 15 C -0.547 4.547 16 H 0.100 0.900 17 C -0.130 4.130 18 N -0.538 5.538 19 Si 0.701 3.299 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.192 1.192 23 C -0.050 4.050 24 H 0.039 0.961 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.127 0.873 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.042 0.958 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.014 0.986 44 H 0.015 0.985 45 H 0.074 0.926 46 H 0.041 0.959 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.933 16.518 -6.955 20.491 hybrid contribution 0.446 1.110 0.662 1.367 sum 10.379 17.627 -6.292 21.402 Atomic orbital electron populations 1.22500 0.87820 1.02929 0.99811 1.64739 1.08072 1.13457 1.37657 1.22909 0.95510 0.90831 1.00139 1.22417 0.97951 0.96306 0.99389 1.20930 0.96095 0.93921 0.94802 1.23272 0.92280 1.02180 0.89775 1.21497 1.00673 0.97099 0.95014 1.21617 1.01118 0.95135 0.97641 1.22069 0.95112 1.00552 0.89289 1.61768 1.51323 1.10040 1.01262 1.22089 0.93078 0.97263 0.94017 1.22283 0.89840 0.94423 0.94686 1.87980 1.37930 1.67981 1.34252 1.20543 0.89878 0.93900 0.86317 1.20894 1.06924 1.29458 0.97413 0.90034 1.24746 0.94947 0.94827 0.98464 1.69883 1.14032 1.34863 1.35057 0.86878 0.78815 0.78377 0.85827 1.19980 1.21006 1.19195 1.21920 0.96200 0.87469 0.99453 0.96060 0.91748 0.90441 0.94292 0.90782 0.91519 0.91188 0.87307 0.94689 0.92037 0.92361 0.91859 0.90554 0.95793 0.90696 0.90261 0.94334 0.94622 0.94311 0.98589 0.98455 0.92576 0.95948 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.39 60.06 0.56 0.82 16 2 N -0.52 -7.63 5.45 -238.90 -1.30 -8.93 16 3 C 0.03 0.40 6.71 -2.64 -0.02 0.39 16 4 C -0.12 -1.28 6.07 -25.65 -0.16 -1.43 16 5 C -0.06 -0.68 0.58 -154.10 -0.09 -0.77 16 6 C 0.05 0.76 4.58 -2.18 -0.01 0.75 16 7 C -0.10 -1.09 4.64 -26.95 -0.12 -1.22 16 8 C -0.12 -1.31 5.91 -26.57 -0.16 -1.47 16 9 C 0.06 0.72 5.41 -3.82 -0.02 0.69 16 10 N -0.52 -7.73 3.89 -235.04 -0.91 -8.64 16 11 C 0.06 0.95 5.39 -3.82 -0.02 0.93 16 12 C 0.07 1.21 6.13 37.16 0.23 1.44 16 13 O -0.36 -8.74 10.27 -35.23 -0.36 -9.10 16 14 C 0.17 4.47 4.76 36.01 0.17 4.64 16 15 C -0.51 -15.52 9.99 -34.44 -0.34 -15.86 16 16 H 0.08 2.72 8.06 -52.49 -0.42 2.30 16 17 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 18 N -0.90 -28.28 13.96 55.43 0.77 -27.51 16 19 Si 0.87 22.09 27.47 -169.99 -4.67 17.42 16 20 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 21 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 23 C 0.08 1.04 3.88 -4.16 -0.02 1.03 16 24 H 0.02 0.26 8.01 -51.93 -0.42 -0.15 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.04 0.42 7.73 -51.93 -0.40 0.02 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.61 7.82 -51.93 -0.41 0.20 16 30 H 0.07 0.68 7.84 -51.93 -0.41 0.27 16 31 H 0.11 1.98 7.46 -51.93 -0.39 1.59 16 32 H 0.03 0.48 7.77 -51.93 -0.40 0.08 16 33 H 0.06 0.60 8.05 -51.93 -0.42 0.18 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.99 7.55 -51.92 -0.39 0.59 16 37 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.07 0.94 7.92 -51.93 -0.41 0.53 16 39 H 0.08 1.18 7.79 -51.93 -0.40 0.78 16 40 H 0.04 0.49 8.00 -51.93 -0.42 0.07 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.04 0.71 6.72 -51.93 -0.35 0.36 16 43 H 0.00 -0.09 7.20 -51.93 -0.37 -0.47 16 44 H 0.00 -0.06 7.57 -51.93 -0.39 -0.45 16 45 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 46 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 47 H 0.09 1.34 6.60 -51.93 -0.34 1.00 16 LS Contribution 356.23 15.07 5.37 5.37 Total: -1.00 -32.37 356.23 -10.09 -42.46 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -8.89 Total: -3.03 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -0.09 Total: -8.04 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: -1.44 Total: -45.08 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.36 Total: -9.10 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.37 -10.09 -42.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595504993.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.790 kcal (2) G-P(sol) polarization free energy of solvation -32.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds