Wall clock time and date at job start Tue Mar 31 2020 05:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.46943 * 2 1 4 4 C 1.46510 * 120.00200 * 270.00297 * 3 2 1 5 5 C 1.50702 * 109.46861 * 269.99890 * 4 3 2 6 6 H 1.07998 * 119.99968 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99999 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00169 * 180.02562 * 7 5 4 9 9 Si 1.86808 * 119.99893 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47015 * 90.00007 * 9 7 5 11 11 H 1.48500 * 109.46932 * 210.00096 * 9 7 5 12 12 H 1.48502 * 109.46816 * 329.99533 * 9 7 5 13 13 C 1.34777 * 120.00134 * 89.99786 * 3 2 1 14 14 O 1.21283 * 119.99989 * 179.97438 * 13 3 2 15 15 C 1.50698 * 119.99960 * 0.02562 * 13 3 2 16 16 N 1.46903 * 109.47286 * 179.97438 * 15 13 3 17 17 C 1.46903 * 110.99723 * 66.04322 * 16 15 13 18 18 C 1.46897 * 110.99915 * 189.99875 * 16 15 13 19 19 C 1.53006 * 109.46853 * 170.00334 * 18 16 15 20 20 H 1.09002 * 115.56020 * 330.69677 * 19 18 16 21 21 C 1.53000 * 117.49776 * 116.39094 * 19 18 16 22 22 C 1.52997 * 117.49537 * 185.01549 * 19 18 16 23 23 C 1.52997 * 117.49797 * 145.02216 * 22 19 18 24 24 C 1.52993 * 117.50138 * 359.97438 * 22 19 18 25 25 H 1.09000 * 109.47149 * 299.99702 * 1 2 3 26 26 H 1.08999 * 109.47390 * 60.00408 * 1 2 3 27 27 H 1.09002 * 109.46971 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47149 * 240.00298 * 2 1 3 29 29 H 1.08992 * 109.47687 * 119.99818 * 2 1 3 30 30 H 1.08998 * 109.46801 * 29.99775 * 4 3 2 31 31 H 1.08990 * 109.47148 * 149.99837 * 4 3 2 32 32 H 0.96996 * 119.99832 * 180.02562 * 8 7 5 33 33 H 1.08995 * 109.47147 * 59.99766 * 15 13 3 34 34 H 1.08996 * 109.46760 * 299.99564 * 15 13 3 35 35 H 1.09000 * 109.47233 * 183.95125 * 17 16 15 36 36 H 1.09000 * 109.47280 * 303.95661 * 17 16 15 37 37 H 1.09002 * 109.47219 * 63.95637 * 17 16 15 38 38 H 1.09002 * 109.47099 * 49.99999 * 18 16 15 39 39 H 1.08999 * 109.47104 * 289.99974 * 18 16 15 40 40 H 1.08990 * 117.49990 * 359.97438 * 21 19 18 41 41 H 1.09004 * 117.49237 * 214.97568 * 21 19 18 42 42 H 1.08998 * 109.47358 * 180.02562 * 23 22 19 43 43 H 1.09002 * 109.46900 * 300.00956 * 23 22 19 44 44 H 1.09004 * 109.47569 * 60.00570 * 23 22 19 45 45 H 1.09004 * 109.47489 * 299.99249 * 24 22 19 46 46 H 1.09006 * 109.47230 * 59.99037 * 24 22 19 47 47 H 1.09001 * 109.47457 * 179.97438 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2623 2.0719 -1.2688 5 6 3.6857 1.8352 -1.7038 6 1 4.3427 1.2311 -1.0958 7 6 4.1489 2.3898 -2.8780 8 7 5.3909 2.1828 -3.2579 9 14 3.0125 3.4354 -3.9292 10 1 3.1160 4.8556 -3.5081 11 1 3.4054 3.3122 -5.3560 12 1 1.6129 2.9693 -3.7593 13 6 2.2428 2.0166 1.1672 14 8 2.6475 3.1599 1.1672 15 6 1.9922 1.3060 2.4723 16 7 2.3108 2.2059 3.5889 17 6 1.3842 3.3452 3.6276 18 6 2.3076 1.4810 4.8665 19 6 2.8813 2.3796 5.9641 20 1 3.6146 3.1154 5.6340 21 6 1.9497 2.7760 7.1113 22 6 3.0727 1.7649 7.3520 23 6 4.2786 2.2303 8.1705 24 6 2.6753 0.2991 7.5364 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8899 30 1 1.5815 1.6878 -2.0284 31 1 2.0953 3.1411 -1.1384 32 1 5.7169 2.5733 -4.0838 33 1 2.6227 0.4188 2.5298 34 1 0.9444 1.0116 2.5302 35 1 1.6849 4.0313 4.4194 36 1 1.4062 3.8642 2.6693 37 1 0.3740 2.9855 3.8229 38 1 2.9184 0.5827 4.7761 39 1 1.2858 1.2014 5.1231 40 1 0.9282 2.3970 7.0839 41 1 2.0703 3.7726 7.5359 42 1 4.2886 1.7123 9.1295 43 1 5.1958 2.0047 7.6264 44 1 4.2109 3.3052 8.3385 45 1 1.6154 0.1789 7.3120 46 1 3.2624 -0.3242 6.8618 47 1 2.8652 -0.0021 8.5666 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595914229.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:09 Heat of formation + Delta-G solvation = -6.867804 kcal Electronic energy + Delta-G solvation = -22942.579257 eV Core-core repulsion = 19740.447331 eV Total energy + Delta-G solvation = -3202.131925 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.59027 -38.81570 -36.26472 -35.15230 -32.68575 -30.40932 -29.97784 -28.69755 -28.03303 -27.06394 -26.79864 -23.30264 -22.95804 -21.67805 -20.78190 -18.85669 -18.17100 -16.90174 -16.64067 -15.75292 -15.69079 -15.01431 -14.86589 -14.46370 -14.14788 -13.85299 -13.76978 -13.48893 -13.42329 -12.83637 -12.73421 -12.55922 -12.46891 -12.26230 -12.18335 -11.99344 -11.84556 -11.58369 -11.46865 -11.43389 -11.19809 -11.13899 -10.93032 -10.66191 -10.46950 -10.11459 -9.90611 -9.66946 -9.48986 -8.91573 -8.55345 -8.13121 -7.65331 -6.04943 -4.03213 3.31144 3.36799 3.38887 3.40143 3.47774 3.70278 4.17742 4.42608 4.55668 4.59790 4.76896 4.90083 5.02586 5.19835 5.24391 5.28781 5.31205 5.39721 5.42822 5.49478 5.52971 5.56467 5.60648 5.65727 5.69669 5.71504 5.73537 5.75522 5.82907 5.86496 5.95629 5.97836 6.10842 6.15097 6.24062 6.35260 6.39237 6.72436 6.96146 7.10457 7.21758 7.41646 7.65473 8.31766 8.51638 8.98452 9.07956 9.55615 11.08605 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023721 B = 0.003562 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.115866 B = 7857.972009 C = 8258.301989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.596 5.596 4 C 0.218 3.782 5 C -0.526 4.526 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.509 3.491 14 O -0.522 6.522 15 C 0.038 3.962 16 N -0.521 5.521 17 C 0.023 3.977 18 C 0.089 3.911 19 C -0.132 4.132 20 H 0.114 0.886 21 C -0.176 4.176 22 C -0.128 4.128 23 C -0.114 4.114 24 C -0.115 4.115 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.028 0.972 31 H 0.035 0.965 32 H 0.264 0.736 33 H 0.097 0.903 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.013 0.987 38 H 0.077 0.923 39 H 0.032 0.968 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.060 0.940 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.327 -4.970 19.360 22.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.329 5.329 4 C 0.098 3.902 5 C -0.565 4.565 6 H 0.093 0.907 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.295 3.705 14 O -0.398 6.398 15 C -0.093 4.093 16 N -0.245 5.245 17 C -0.124 4.124 18 C -0.039 4.039 19 C -0.151 4.151 20 H 0.132 0.868 21 C -0.213 4.213 22 C -0.129 4.129 23 C -0.171 4.171 24 C -0.172 4.172 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.032 0.968 38 H 0.095 0.905 39 H 0.050 0.950 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.504 -4.125 19.109 21.737 hybrid contribution -1.268 0.141 -0.559 1.393 sum -10.772 -3.984 18.550 21.818 Atomic orbital electron populations 1.22234 0.96922 1.01501 1.02112 1.21419 0.93250 0.84033 1.03051 1.47950 1.64561 1.13354 1.06996 1.19612 0.97240 0.93311 0.80083 1.21345 0.95368 1.32794 1.06987 0.90749 1.24860 0.94981 0.95832 0.97377 1.69899 1.15143 1.45078 1.23558 0.86855 0.81451 0.81652 0.79734 1.19932 1.21131 1.19133 1.20156 0.78486 0.87113 0.84702 1.90635 1.44406 1.17986 1.86751 1.22047 1.00235 0.96229 0.90747 1.61551 1.52396 1.09068 1.01449 1.22525 0.91816 0.93696 1.04402 1.21659 0.98453 0.95772 0.88002 1.22432 1.02329 1.02005 0.88315 0.86786 1.23329 0.95187 0.99384 1.03362 1.21596 0.98095 0.94598 0.98597 1.21343 0.96214 1.00743 0.98830 1.21335 1.00939 0.93281 1.01656 0.93193 0.92208 0.92018 0.89708 0.91553 0.95401 0.94702 0.92617 0.88465 0.92710 0.91501 0.89292 0.96811 0.90506 0.95018 0.89209 0.89027 0.92349 0.92046 0.92536 0.92611 0.92059 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 10.24 37.15 0.38 -1.74 16 2 C 0.11 1.65 5.93 -4.05 -0.02 1.63 16 3 N -0.60 -12.26 2.46 -175.06 -0.43 -12.69 16 4 C 0.22 5.37 4.23 -5.19 -0.02 5.35 16 5 C -0.53 -15.30 9.94 -34.44 -0.34 -15.65 16 6 H 0.07 2.38 8.06 -52.49 -0.42 1.95 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 9 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 10 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 13 C 0.51 10.49 7.36 -10.99 -0.08 10.41 16 14 O -0.52 -12.96 13.91 5.56 0.08 -12.88 16 15 C 0.04 0.59 4.00 -4.98 -0.02 0.57 16 16 N -0.52 -7.91 4.50 -244.37 -1.10 -9.01 16 17 C 0.02 0.34 9.01 60.07 0.54 0.89 16 18 C 0.09 1.05 4.32 -3.82 -0.02 1.03 16 19 C -0.13 -1.46 4.52 -90.62 -0.41 -1.87 16 20 H 0.11 1.46 8.14 -51.93 -0.42 1.03 16 21 C -0.18 -1.64 9.47 -26.73 -0.25 -1.89 16 22 C -0.13 -1.18 2.70 -154.51 -0.42 -1.59 16 23 C -0.11 -0.95 9.85 37.16 0.37 -0.59 16 24 C -0.12 -0.92 8.86 37.15 0.33 -0.59 16 25 H 0.05 0.60 7.22 -51.93 -0.38 0.22 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 29 H 0.07 0.86 6.44 -51.93 -0.33 0.53 16 30 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 31 H 0.03 0.92 6.85 -51.93 -0.36 0.56 16 32 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 33 H 0.10 1.35 7.19 -51.93 -0.37 0.98 16 34 H 0.06 0.72 7.17 -51.93 -0.37 0.34 16 35 H 0.07 0.90 7.28 -51.93 -0.38 0.53 16 36 H 0.09 1.58 5.83 -51.93 -0.30 1.28 16 37 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 38 H 0.08 0.87 7.56 -51.93 -0.39 0.48 16 39 H 0.03 0.34 7.85 -51.93 -0.41 -0.07 16 40 H 0.09 0.80 7.94 -51.93 -0.41 0.39 16 41 H 0.09 0.81 8.05 -51.93 -0.42 0.39 16 42 H 0.06 0.42 7.92 -51.93 -0.41 0.01 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.46 7.90 -51.93 -0.41 0.05 16 45 H 0.05 0.43 7.90 -51.93 -0.41 0.02 16 46 H 0.06 0.49 7.83 -51.93 -0.41 0.09 16 47 H 0.06 0.41 7.92 -51.93 -0.41 0.00 16 LS Contribution 370.08 15.07 5.58 5.58 Total: -1.00 -33.73 370.08 -8.50 -42.23 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -8.66 Total: -1.08 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -0.07 Total: -2.04 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -0.76 Total: -48.95 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.08 Total: -12.88 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.73 -8.50 -42.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595914229.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.360 kcal (2) G-P(sol) polarization free energy of solvation -33.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds