Wall clock time and date at job start Tue Mar 31 2020 05:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46810 * 2 1 4 4 C 1.46499 * 120.00381 * 90.00065 * 3 2 1 5 5 C 1.50701 * 109.46992 * 269.99655 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47432 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46890 * 120.00210 * 9 7 5 12 12 H 1.48501 * 109.47062 * 240.00257 * 9 7 5 13 13 C 1.34781 * 119.99832 * 269.99624 * 3 2 1 14 14 O 1.21281 * 120.00142 * 179.97438 * 13 3 2 15 15 C 1.50703 * 120.00021 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.47092 * 179.97438 * 15 13 3 17 17 C 1.46897 * 110.99512 * 66.04677 * 16 15 13 18 18 C 1.46899 * 110.99640 * 189.99942 * 16 15 13 19 19 C 1.53003 * 109.46947 * 170.00146 * 18 16 15 20 20 H 1.09004 * 115.54838 * 29.41496 * 19 18 16 21 21 C 1.52996 * 117.49944 * 243.74671 * 19 18 16 22 22 C 1.53001 * 117.49888 * 175.08482 * 19 18 16 23 23 C 1.52999 * 117.49686 * 214.97916 * 22 19 18 24 24 C 1.52994 * 117.49996 * 0.02562 * 22 19 18 25 25 H 1.09000 * 109.47431 * 300.00525 * 1 2 3 26 26 H 1.09004 * 109.47052 * 59.99943 * 1 2 3 27 27 H 1.08998 * 109.46739 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47054 * 239.99973 * 2 1 3 29 29 H 1.08994 * 109.47108 * 119.99259 * 2 1 3 30 30 H 1.09002 * 109.47391 * 149.99645 * 4 3 2 31 31 H 1.09001 * 109.46813 * 29.99701 * 4 3 2 32 32 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47031 * 299.99740 * 15 13 3 34 34 H 1.08999 * 109.46714 * 59.99599 * 15 13 3 35 35 H 1.09003 * 109.47748 * 60.00238 * 17 16 15 36 36 H 1.09007 * 109.46838 * 179.97438 * 17 16 15 37 37 H 1.08996 * 109.47841 * 299.99621 * 17 16 15 38 38 H 1.08998 * 109.47273 * 289.99713 * 18 16 15 39 39 H 1.08994 * 109.47337 * 50.00420 * 18 16 15 40 40 H 1.09004 * 117.49799 * 0.02562 * 21 19 18 41 41 H 1.08998 * 117.49770 * 144.99645 * 21 19 18 42 42 H 1.08996 * 109.47412 * 60.00175 * 23 22 19 43 43 H 1.09001 * 109.46723 * 180.02562 * 23 22 19 44 44 H 1.09002 * 109.47490 * 300.00103 * 23 22 19 45 45 H 1.09007 * 109.47123 * 60.00055 * 24 22 19 46 46 H 1.08998 * 109.47428 * 179.97438 * 24 22 19 47 47 H 1.08993 * 109.47343 * 300.00108 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0720 1.2687 5 6 1.0066 2.7824 1.7036 6 1 0.1156 2.7248 1.0961 7 6 0.9948 3.5050 2.8778 8 7 2.0797 3.5748 3.6179 9 14 -0.5620 4.3850 3.4173 10 1 -1.6347 4.1512 2.4173 11 1 -0.9944 3.8612 4.7379 12 1 -0.2949 5.8418 3.5259 13 6 2.2430 2.0166 -1.1673 14 8 2.6467 3.1602 -1.1673 15 6 1.9913 1.3063 -2.4724 16 7 2.3091 2.2064 -3.5890 17 6 3.7458 2.5102 -3.6277 18 6 1.8560 1.6406 -4.8666 19 6 1.9744 2.6999 -5.9642 20 1 2.7647 3.4373 -5.8225 21 6 0.6822 3.1694 -6.6353 22 6 1.6581 2.2700 -7.3981 23 6 2.4748 2.9084 -8.5234 24 6 1.2469 0.8139 -7.6246 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 3.0644 2.7986 1.1383 31 1 2.5506 1.3453 2.0283 32 1 2.0715 4.0835 4.4438 33 1 2.6213 0.4186 -2.5302 34 1 0.9433 1.0125 -2.5298 35 1 4.3095 1.5857 -3.7528 36 1 3.9535 3.1780 -4.4639 37 1 4.0406 2.9921 -2.6956 38 1 2.4750 0.7809 -5.1231 39 1 0.8164 1.3258 -4.7762 40 1 -0.2525 2.7239 -6.2946 41 1 0.6222 4.2156 -6.9352 42 1 3.5309 2.6799 -8.3806 43 1 2.1433 2.5116 -9.4830 44 1 2.3316 3.9889 -8.5084 45 1 0.3439 0.5982 -7.0534 46 1 1.0530 0.6517 -8.6848 47 1 2.0503 0.1543 -7.2968 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595914231.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:11 Heat of formation + Delta-G solvation = -9.784335 kcal Electronic energy + Delta-G solvation = -22976.228443 eV Core-core repulsion = 19773.970047 eV Total energy + Delta-G solvation = -3202.258396 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.50880 -38.73869 -36.23069 -35.04504 -32.70728 -30.10053 -29.87004 -28.58224 -28.00836 -26.86879 -26.55875 -23.55253 -22.71918 -21.96493 -20.61495 -18.84736 -18.14489 -16.64510 -16.50887 -15.62482 -15.39806 -15.31720 -14.77219 -14.21697 -14.19493 -14.06057 -13.58244 -13.46148 -13.12774 -12.80975 -12.66154 -12.54575 -12.34076 -12.22139 -12.09715 -11.91960 -11.70349 -11.45907 -11.36043 -11.21933 -11.13328 -10.97833 -10.81564 -10.67297 -10.47301 -10.00295 -9.90842 -9.65047 -9.49967 -8.82192 -8.39083 -8.04251 -7.58734 -5.99909 -4.03350 3.32581 3.39932 3.42405 3.47895 3.52898 3.81186 4.27589 4.49561 4.53759 4.68138 4.73755 4.90406 5.13225 5.23791 5.32115 5.34905 5.37062 5.39668 5.46319 5.54234 5.55925 5.59158 5.70539 5.71511 5.72605 5.77278 5.78197 5.82954 5.83732 5.88835 5.92619 6.12283 6.14298 6.20853 6.34080 6.42766 6.78865 7.01688 7.19160 7.25025 7.49620 7.63251 7.97579 8.29386 8.49608 8.97192 9.20168 9.61481 11.08341 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023288 B = 0.003528 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.065526 B = 7935.680557 C = 8141.576432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.112 3.888 3 N -0.601 5.601 4 C 0.247 3.753 5 C -0.519 4.519 6 H 0.059 0.941 7 C 0.059 3.941 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.283 1.283 13 C 0.507 3.493 14 O -0.523 6.523 15 C 0.038 3.962 16 N -0.520 5.520 17 C 0.019 3.981 18 C 0.088 3.912 19 C -0.134 4.134 20 H 0.109 0.891 21 C -0.165 4.165 22 C -0.135 4.135 23 C -0.113 4.113 24 C -0.114 4.114 25 H 0.076 0.924 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.030 0.970 32 H 0.262 0.738 33 H 0.053 0.947 34 H 0.096 0.904 35 H 0.015 0.985 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.035 0.965 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.461 -8.773 -20.014 21.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.013 4.013 3 N -0.334 5.334 4 C 0.128 3.872 5 C -0.558 4.558 6 H 0.077 0.923 7 C -0.142 4.142 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.209 1.209 13 C 0.293 3.707 14 O -0.399 6.399 15 C -0.093 4.093 16 N -0.244 5.244 17 C -0.128 4.128 18 C -0.039 4.039 19 C -0.152 4.152 20 H 0.127 0.873 21 C -0.202 4.202 22 C -0.135 4.135 23 C -0.170 4.170 24 C -0.171 4.171 25 H 0.095 0.905 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.114 0.886 35 H 0.033 0.967 36 H 0.083 0.917 37 H 0.111 0.889 38 H 0.053 0.947 39 H 0.091 0.909 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.415 -7.642 -19.740 21.172 hybrid contribution -0.559 -0.284 0.349 0.718 sum -0.974 -7.926 -19.391 20.971 Atomic orbital electron populations 1.22235 0.96381 1.00788 1.03428 1.21369 0.94554 0.83883 1.01460 1.48280 1.64293 1.13140 1.07722 1.19264 0.97505 0.92404 0.78032 1.21496 0.97549 1.30774 1.05983 0.92256 1.24938 0.96423 0.96342 0.96529 1.69942 1.27436 1.41837 1.14380 0.86476 0.83300 0.79621 0.78231 1.19801 1.21085 1.20924 1.20105 0.78951 0.86962 0.84683 1.90631 1.45296 1.17225 1.86754 1.22083 1.02261 0.93991 0.90970 1.61552 1.17573 1.43848 1.01430 1.22593 0.86384 0.99414 1.04456 1.21654 1.00116 0.94213 0.87959 1.22424 1.00092 1.01203 0.91493 0.87310 1.23276 0.94043 0.99417 1.03454 1.21649 1.02870 0.95914 0.93085 1.21334 0.99175 1.00026 0.96512 1.21324 1.00949 0.93326 1.01528 0.90521 0.93287 0.92904 0.92307 0.90759 0.93985 0.95189 0.92880 0.92900 0.88633 0.96650 0.91684 0.88919 0.94733 0.90892 0.88873 0.88995 0.92386 0.92320 0.92482 0.92410 0.92358 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 10.24 37.16 0.38 -2.22 16 2 C 0.11 1.79 5.98 -4.04 -0.02 1.77 16 3 N -0.60 -12.73 2.46 -175.06 -0.43 -13.16 16 4 C 0.25 6.48 5.20 -5.19 -0.03 6.45 16 5 C -0.52 -14.72 8.92 -34.44 -0.31 -15.03 16 6 H 0.06 1.69 7.42 -52.49 -0.39 1.30 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 8 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 9 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 10 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 13 C 0.51 10.69 7.40 -10.98 -0.08 10.61 16 14 O -0.52 -13.29 13.89 5.56 0.08 -13.22 16 15 C 0.04 0.60 4.00 -4.97 -0.02 0.58 16 16 N -0.52 -8.05 4.50 -244.37 -1.10 -9.15 16 17 C 0.02 0.29 9.04 60.06 0.54 0.83 16 18 C 0.09 1.06 4.32 -3.82 -0.02 1.04 16 19 C -0.13 -1.50 5.39 -90.62 -0.49 -1.99 16 20 H 0.11 1.32 6.36 -51.93 -0.33 0.99 16 21 C -0.16 -1.70 9.47 -26.69 -0.25 -1.95 16 22 C -0.13 -1.24 2.70 -154.47 -0.42 -1.66 16 23 C -0.11 -0.91 9.85 37.16 0.37 -0.54 16 24 C -0.11 -0.91 8.86 37.15 0.33 -0.58 16 25 H 0.08 1.41 7.26 -51.93 -0.38 1.03 16 26 H 0.05 0.74 7.22 -51.93 -0.37 0.36 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 29 H 0.07 1.16 7.89 -51.93 -0.41 0.75 16 30 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 31 H 0.03 0.79 7.89 -51.93 -0.41 0.38 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.05 0.72 7.38 -51.93 -0.38 0.33 16 34 H 0.10 1.37 6.97 -51.93 -0.36 1.01 16 35 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.06 0.87 6.22 -51.93 -0.32 0.55 16 37 H 0.09 1.70 5.88 -51.93 -0.31 1.39 16 38 H 0.03 0.38 7.75 -51.93 -0.40 -0.02 16 39 H 0.07 0.84 7.66 -51.93 -0.40 0.44 16 40 H 0.09 0.94 7.94 -51.93 -0.41 0.53 16 41 H 0.09 0.91 8.05 -51.93 -0.42 0.50 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.41 7.93 -51.93 -0.41 0.00 16 44 H 0.06 0.45 7.90 -51.93 -0.41 0.04 16 45 H 0.06 0.46 7.90 -51.93 -0.41 0.05 16 46 H 0.06 0.41 7.92 -51.93 -0.41 0.00 16 47 H 0.06 0.46 7.83 -51.93 -0.41 0.05 16 LS Contribution 369.80 15.07 5.57 5.57 Total: -1.00 -32.61 369.80 -8.75 -41.35 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -8.47 Total: -1.31 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -0.11 Total: -1.09 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: -0.79 Total: -48.43 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.08 Total: -13.22 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.61 -8.75 -41.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595914231.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.570 kcal (2) G-P(sol) polarization free energy of solvation -32.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds