Wall clock time and date at job start Tue Mar 31 2020 05:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 111.00270 * 2 1 4 4 C 1.46899 * 110.99841 * 123.95681 * 2 1 3 5 5 H 1.08994 * 110.43556 * 301.49833 * 4 2 1 6 6 C 1.54267 * 110.48718 * 178.96023 * 4 2 1 7 7 C 1.53876 * 106.60088 * 217.71394 * 6 4 2 8 8 C 1.54267 * 106.59763 * 359.97438 * 7 6 4 9 9 C 1.54898 * 110.48877 * 64.04497 * 4 2 1 10 10 H 1.08999 * 110.75185 * 38.30103 * 9 4 2 11 11 N 1.46496 * 110.75035 * 274.93318 * 9 4 2 12 12 C 1.34783 * 119.99585 * 154.99939 * 11 9 4 13 13 O 1.21273 * 120.00138 * 359.97438 * 12 11 9 14 14 C 1.50704 * 119.99665 * 180.02562 * 12 11 9 15 15 C 1.53000 * 109.46796 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.47091 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.47091 * 179.97438 * 16 15 14 18 18 C 1.50696 * 109.47249 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99634 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00179 * 179.97438 * 18 17 16 21 21 N 1.31507 * 120.00177 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99832 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.46993 * 60.00037 * 22 20 18 24 24 H 1.48505 * 109.46692 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46940 * 299.99926 * 22 20 18 26 26 H 1.09006 * 109.47023 * 296.04312 * 1 2 3 27 27 H 1.09004 * 109.47099 * 56.04261 * 1 2 3 28 28 H 1.09004 * 109.47730 * 176.04512 * 1 2 3 29 29 H 1.08995 * 109.46814 * 189.76413 * 3 2 1 30 30 H 1.08991 * 109.47113 * 309.76570 * 3 2 1 31 31 H 1.09003 * 109.46534 * 69.76871 * 3 2 1 32 32 H 1.09003 * 110.03106 * 336.99350 * 6 4 2 33 33 H 1.08993 * 110.03625 * 98.42351 * 6 4 2 34 34 H 1.09001 * 110.03317 * 119.28366 * 7 6 4 35 35 H 1.08996 * 110.03213 * 240.66466 * 7 6 4 36 36 H 1.09003 * 110.48726 * 142.28794 * 8 7 6 37 37 H 1.09003 * 110.48686 * 264.93592 * 8 7 6 38 38 H 0.97002 * 120.00820 * 334.99823 * 11 9 4 39 39 H 1.08997 * 109.47018 * 299.99683 * 14 12 11 40 40 H 1.08996 * 109.47377 * 60.00424 * 14 12 11 41 41 H 1.09001 * 109.47672 * 299.99779 * 15 14 12 42 42 H 1.09001 * 109.47180 * 60.00095 * 15 14 12 43 43 H 1.08997 * 109.47177 * 300.00093 * 16 15 14 44 44 H 1.09001 * 109.46725 * 60.00191 * 16 15 14 45 45 H 1.09001 * 109.47048 * 300.00583 * 17 16 15 46 46 H 1.09001 * 109.47180 * 60.00470 * 17 16 15 47 47 H 0.96998 * 120.00261 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.6336 -0.3490 2.0773 6 6 3.5378 -0.7802 1.1116 7 6 3.9725 -2.1809 1.5769 8 6 2.6791 -2.9690 1.8701 9 6 1.5968 -2.2580 1.0174 10 1 1.6448 -2.5883 -0.0202 11 7 0.2611 -2.4849 1.5748 12 6 -0.4786 -3.5280 1.1487 13 8 -0.0386 -4.2783 0.3036 14 6 -1.8528 -3.7611 1.7216 15 6 -2.4728 -4.9997 1.0718 16 6 -3.8678 -5.2368 1.6539 17 6 -4.4880 -6.4751 1.0037 18 6 -5.8622 -6.7083 1.5765 19 1 -6.2538 -6.0403 2.3295 20 6 -6.6195 -7.7743 1.1395 21 7 -6.1425 -8.5880 0.2231 22 14 -8.3227 -8.0637 1.8502 23 1 -9.1790 -6.8809 1.5806 24 1 -8.9247 -9.2656 1.2189 25 1 -8.2179 -8.2753 3.3163 26 1 -0.3633 0.4512 0.9234 27 1 -0.3633 0.5741 -0.8524 28 1 -0.3635 -1.0252 -0.0709 29 1 3.0711 1.3476 -0.1743 30 1 1.5121 1.9462 -0.7899 31 1 1.7939 1.8379 0.9643 32 1 3.8958 -0.5954 0.0987 33 1 3.9296 -0.0228 1.7904 34 1 4.5415 -2.6760 0.7900 35 1 4.5760 -2.1034 2.4812 36 1 2.7872 -4.0085 1.5603 37 1 2.4280 -2.9097 2.9291 38 1 -0.0910 -1.8846 2.2505 39 1 -1.7764 -3.9147 2.7980 40 1 -2.4816 -2.8934 1.5221 41 1 -2.5493 -4.8457 -0.0045 42 1 -1.8441 -5.8676 1.2709 43 1 -3.7910 -5.3911 2.7302 44 1 -4.4967 -4.3690 1.4552 45 1 -4.5648 -6.3204 -0.0726 46 1 -3.8593 -7.3431 1.2020 47 1 -6.6751 -9.3382 -0.0842 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597532905.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:21 Heat of formation + Delta-G solvation = -63.748542 kcal Electronic energy + Delta-G solvation = -22316.587401 eV Core-core repulsion = 19111.988942 eV Total energy + Delta-G solvation = -3204.598459 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.31667 -38.68483 -35.74832 -34.85124 -33.87348 -32.57615 -29.92622 -28.58942 -28.15313 -27.28385 -25.44981 -23.45949 -22.31891 -20.73365 -20.70663 -19.96413 -19.71712 -16.98216 -16.90392 -16.28944 -16.07837 -15.57366 -15.01661 -14.92744 -14.48416 -14.25675 -14.00758 -13.86590 -13.43105 -12.92633 -12.86914 -12.61004 -12.47218 -12.26436 -12.00471 -11.76586 -11.64779 -11.56912 -11.44869 -11.29133 -11.08786 -10.94944 -10.76564 -10.51820 -10.49682 -10.38068 -9.76345 -9.58368 -9.19358 -9.07223 -8.96371 -8.70415 -8.28247 -5.93043 -3.95633 2.75940 3.10907 3.36585 3.40893 3.43150 3.55801 4.10452 4.38218 4.50585 4.61906 4.81780 4.91199 4.97530 5.00724 5.09311 5.09833 5.18986 5.26744 5.31026 5.34423 5.36643 5.40322 5.42481 5.52547 5.59949 5.69946 5.72903 5.80261 5.88241 5.89553 6.03503 6.16943 6.33351 6.40295 6.58060 6.66551 6.73024 6.87144 7.05294 7.22796 7.46510 7.76232 7.92911 8.08565 8.31390 8.50236 9.11955 9.67816 11.18289 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034176 B = 0.002530 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.091585 B =11064.681534 C =11508.136617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.538 5.538 3 C 0.023 3.977 4 C 0.072 3.928 5 H 0.050 0.950 6 C -0.116 4.116 7 C -0.120 4.120 8 C -0.135 4.135 9 C 0.148 3.852 10 H 0.107 0.893 11 N -0.733 5.733 12 C 0.513 3.487 13 O -0.531 6.531 14 C -0.139 4.139 15 C -0.103 4.103 16 C -0.110 4.110 17 C 0.020 3.980 18 C -0.521 4.521 19 H 0.053 0.947 20 C 0.055 3.945 21 N -0.895 5.895 22 Si 0.891 3.109 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.024 0.976 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.024 0.976 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.396 0.604 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.222 20.897 4.018 29.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.262 5.262 3 C -0.125 4.125 4 C -0.037 4.037 5 H 0.068 0.932 6 C -0.154 4.154 7 C -0.158 4.158 8 C -0.175 4.175 9 C 0.043 3.957 10 H 0.125 0.875 11 N -0.386 5.386 12 C 0.300 3.700 13 O -0.406 6.406 14 C -0.179 4.179 15 C -0.141 4.141 16 C -0.148 4.148 17 C -0.017 4.017 18 C -0.559 4.559 19 H 0.072 0.928 20 C -0.146 4.146 21 N -0.535 5.535 22 Si 0.719 3.281 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.042 0.958 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.230 0.770 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 20.636 19.952 2.847 28.845 hybrid contribution -1.431 0.577 1.500 2.152 sum 19.205 20.529 4.347 28.446 Atomic orbital electron populations 1.22516 0.86866 1.03284 1.00267 1.62070 1.08282 1.13613 1.42217 1.22410 1.01143 0.88768 1.00221 1.22791 0.95664 0.93467 0.91809 0.93232 1.22140 0.93373 0.97476 1.02395 1.22033 0.97392 0.95022 1.01389 1.22742 0.94430 1.00195 1.00099 1.21967 0.81430 0.92916 0.99427 0.87520 1.46184 1.17310 1.30845 1.44217 1.21084 0.87421 0.79723 0.81726 1.90709 1.72821 1.45281 1.31825 1.21802 0.92305 1.02008 1.01805 1.21447 0.97304 0.95080 1.00268 1.21648 0.93249 1.00542 0.99330 1.19089 0.94958 0.91721 0.95928 1.21249 1.01009 1.11196 1.22463 0.92837 1.25039 0.98188 0.96145 0.95181 1.69960 1.37565 1.16061 1.29894 0.86675 0.84606 0.77533 0.79261 1.20292 1.21318 1.20300 0.95767 0.91393 0.90374 0.91153 0.91395 0.95755 0.90253 0.91702 0.91257 0.91569 0.90703 0.91335 0.76988 0.89246 0.89282 0.91791 0.91826 0.93534 0.93529 0.96589 0.96605 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.06 60.06 0.54 0.71 16 2 N -0.54 -4.63 4.85 -241.17 -1.17 -5.79 16 3 C 0.02 0.15 9.20 60.07 0.55 0.70 16 4 C 0.07 0.57 2.23 -66.05 -0.15 0.42 16 5 H 0.05 0.37 8.02 -51.93 -0.42 -0.05 16 6 C -0.12 -0.78 5.35 -25.61 -0.14 -0.92 16 7 C -0.12 -0.84 6.80 -25.61 -0.17 -1.02 16 8 C -0.14 -1.21 6.52 -24.99 -0.16 -1.37 16 9 C 0.15 1.47 2.29 -65.85 -0.15 1.32 16 10 H 0.11 1.38 7.55 -51.93 -0.39 0.99 16 11 N -0.73 -7.33 3.47 -51.79 -0.18 -7.51 16 12 C 0.51 7.07 7.69 -10.98 -0.08 6.99 16 13 O -0.53 -9.69 15.63 5.56 0.09 -9.60 16 14 C -0.14 -1.85 5.70 -27.88 -0.16 -2.01 16 15 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 16 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 17 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 18 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 19 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 21 N -0.90 -27.76 13.29 55.43 0.74 -27.02 16 22 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.07 0.56 8.06 -51.93 -0.42 0.14 16 28 H 0.08 0.80 6.09 -51.93 -0.32 0.49 16 29 H 0.07 0.42 6.94 -51.93 -0.36 0.06 16 30 H 0.07 0.42 8.02 -51.93 -0.42 0.01 16 31 H 0.02 0.15 8.12 -51.93 -0.42 -0.27 16 32 H 0.08 0.57 7.45 -51.93 -0.39 0.18 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.40 2.94 8.57 -40.82 -0.35 2.59 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 42 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 370.91 15.07 5.59 5.59 Total: -1.00 -33.40 370.91 -9.62 -43.02 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -8.93 Total: -2.60 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -0.73 Total: -13.11 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: -0.61 Total: -40.33 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.40 -9.62 -43.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597532905.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.728 kcal (2) G-P(sol) polarization free energy of solvation -33.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds