Wall clock time and date at job start Tue Mar 31 2020 05:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 111.00270 * 2 1 4 4 C 1.46899 * 110.99841 * 123.95681 * 2 1 3 5 5 H 1.08994 * 110.43556 * 301.49833 * 4 2 1 6 6 C 1.54267 * 110.48718 * 178.96023 * 4 2 1 7 7 C 1.53876 * 106.60088 * 217.71394 * 6 4 2 8 8 C 1.54267 * 106.59763 * 359.97438 * 7 6 4 9 9 C 1.54898 * 110.48877 * 64.04497 * 4 2 1 10 10 H 1.08999 * 110.75185 * 38.30103 * 9 4 2 11 11 N 1.46496 * 110.75035 * 274.93318 * 9 4 2 12 12 C 1.34783 * 119.99585 * 154.99939 * 11 9 4 13 13 O 1.21273 * 120.00138 * 359.97438 * 12 11 9 14 14 C 1.50704 * 119.99665 * 180.02562 * 12 11 9 15 15 C 1.53000 * 109.46796 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.47091 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.47091 * 179.97438 * 16 15 14 18 18 C 1.50696 * 109.47249 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99634 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00179 * 179.97438 * 18 17 16 21 21 N 1.31507 * 120.00177 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99832 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.46993 * 60.00037 * 22 20 18 24 24 H 1.48505 * 109.46692 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46940 * 299.99926 * 22 20 18 26 26 H 1.09006 * 109.47023 * 296.04312 * 1 2 3 27 27 H 1.09004 * 109.47099 * 56.04261 * 1 2 3 28 28 H 1.09004 * 109.47730 * 176.04512 * 1 2 3 29 29 H 1.08995 * 109.46814 * 189.76413 * 3 2 1 30 30 H 1.08991 * 109.47113 * 309.76570 * 3 2 1 31 31 H 1.09003 * 109.46534 * 69.76871 * 3 2 1 32 32 H 1.09003 * 110.03106 * 336.99350 * 6 4 2 33 33 H 1.08993 * 110.03625 * 98.42351 * 6 4 2 34 34 H 1.09001 * 110.03317 * 119.28366 * 7 6 4 35 35 H 1.08996 * 110.03213 * 240.66466 * 7 6 4 36 36 H 1.09003 * 110.48726 * 142.28794 * 8 7 6 37 37 H 1.09003 * 110.48686 * 264.93592 * 8 7 6 38 38 H 0.97002 * 120.00820 * 334.99823 * 11 9 4 39 39 H 1.08997 * 109.47018 * 299.99683 * 14 12 11 40 40 H 1.08996 * 109.47377 * 60.00424 * 14 12 11 41 41 H 1.09001 * 109.47672 * 299.99779 * 15 14 12 42 42 H 1.09001 * 109.47180 * 60.00095 * 15 14 12 43 43 H 1.08997 * 109.47177 * 300.00093 * 16 15 14 44 44 H 1.09001 * 109.46725 * 60.00191 * 16 15 14 45 45 H 1.09001 * 109.47048 * 300.00583 * 17 16 15 46 46 H 1.09001 * 109.47180 * 60.00470 * 17 16 15 47 47 H 0.96998 * 120.00261 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.6336 -0.3490 2.0773 6 6 3.5378 -0.7802 1.1116 7 6 3.9725 -2.1809 1.5769 8 6 2.6791 -2.9690 1.8701 9 6 1.5968 -2.2580 1.0174 10 1 1.6448 -2.5883 -0.0202 11 7 0.2611 -2.4849 1.5748 12 6 -0.4786 -3.5280 1.1487 13 8 -0.0386 -4.2783 0.3036 14 6 -1.8528 -3.7611 1.7216 15 6 -2.4728 -4.9997 1.0718 16 6 -3.8678 -5.2368 1.6539 17 6 -4.4880 -6.4751 1.0037 18 6 -5.8622 -6.7083 1.5765 19 1 -6.2538 -6.0403 2.3295 20 6 -6.6195 -7.7743 1.1395 21 7 -6.1425 -8.5880 0.2231 22 14 -8.3227 -8.0637 1.8502 23 1 -9.1790 -6.8809 1.5806 24 1 -8.9247 -9.2656 1.2189 25 1 -8.2179 -8.2753 3.3163 26 1 -0.3633 0.4512 0.9234 27 1 -0.3633 0.5741 -0.8524 28 1 -0.3635 -1.0252 -0.0709 29 1 3.0711 1.3476 -0.1743 30 1 1.5121 1.9462 -0.7899 31 1 1.7939 1.8379 0.9643 32 1 3.8958 -0.5954 0.0987 33 1 3.9296 -0.0228 1.7904 34 1 4.5415 -2.6760 0.7900 35 1 4.5760 -2.1034 2.4812 36 1 2.7872 -4.0085 1.5603 37 1 2.4280 -2.9097 2.9291 38 1 -0.0910 -1.8846 2.2505 39 1 -1.7764 -3.9147 2.7980 40 1 -2.4816 -2.8934 1.5221 41 1 -2.5493 -4.8457 -0.0045 42 1 -1.8441 -5.8676 1.2709 43 1 -3.7910 -5.3911 2.7302 44 1 -4.4967 -4.3690 1.4552 45 1 -4.5648 -6.3204 -0.0726 46 1 -3.8593 -7.3431 1.2020 47 1 -6.6751 -9.3382 -0.0842 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597532905.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:20 Heat of formation + Delta-G solvation = -85.702460 kcal Electronic energy + Delta-G solvation = -22317.539395 eV Core-core repulsion = 19111.988942 eV Total energy + Delta-G solvation = -3205.550453 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.22753 -39.59309 -36.69597 -36.33457 -34.82186 -34.57273 -31.57470 -29.35564 -28.92699 -28.04137 -27.10491 -24.48988 -23.70265 -21.89668 -21.56925 -21.41370 -20.52520 -18.42370 -17.94471 -17.68553 -17.06412 -16.77367 -16.50826 -15.71924 -15.61016 -15.40026 -15.16094 -14.59518 -14.53256 -14.33402 -13.83491 -13.64232 -13.51741 -13.48243 -13.22142 -13.07353 -12.79906 -12.61752 -12.57393 -12.37038 -12.15635 -12.12481 -12.07634 -11.90336 -11.79055 -11.37509 -11.36518 -11.35197 -11.16733 -10.74055 -10.54405 -9.99388 -9.29871 -8.18373 -6.30864 1.40184 1.44466 1.52311 1.67149 2.18937 2.42293 2.94928 3.14132 3.43099 3.72810 3.86823 4.00763 4.07040 4.15255 4.23017 4.38175 4.40577 4.43464 4.49372 4.52891 4.61649 4.67556 4.69372 4.71068 4.75922 4.84342 4.88130 5.01081 5.03326 5.04604 5.09926 5.15422 5.19484 5.21201 5.33519 5.36560 5.39382 5.54328 5.58426 5.78258 5.88185 6.07279 6.13487 6.25376 6.56564 6.87560 7.30679 7.38774 8.93794 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034176 B = 0.002530 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.091585 B =11064.681534 C =11508.136617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.557 5.557 3 C 0.024 3.976 4 C 0.079 3.921 5 H 0.065 0.935 6 C -0.110 4.110 7 C -0.115 4.115 8 C -0.134 4.134 9 C 0.145 3.855 10 H 0.070 0.930 11 N -0.711 5.711 12 C 0.513 3.487 13 O -0.586 6.586 14 C -0.128 4.128 15 C -0.096 4.096 16 C -0.095 4.095 17 C 0.019 3.981 18 C -0.543 4.543 19 H 0.066 0.934 20 C -0.007 4.007 21 N -0.939 5.939 22 Si 0.970 3.030 23 H -0.264 1.264 24 H -0.285 1.285 25 H -0.264 1.264 26 H 0.038 0.962 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.049 0.951 37 H 0.080 0.920 38 H 0.414 0.586 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.061 0.939 44 H 0.061 0.939 45 H -0.016 1.016 46 H -0.016 1.016 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.005 23.520 6.474 31.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.282 5.282 3 C -0.124 4.124 4 C -0.030 4.030 5 H 0.083 0.917 6 C -0.148 4.148 7 C -0.154 4.154 8 C -0.173 4.173 9 C 0.039 3.961 10 H 0.088 0.912 11 N -0.363 5.363 12 C 0.302 3.698 13 O -0.466 6.466 14 C -0.168 4.168 15 C -0.134 4.134 16 C -0.132 4.132 17 C -0.018 4.018 18 C -0.581 4.581 19 H 0.085 0.915 20 C -0.204 4.204 21 N -0.579 5.579 22 Si 0.794 3.206 23 H -0.189 1.189 24 H -0.211 1.211 25 H -0.189 1.189 26 H 0.057 0.943 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.251 0.749 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.002 0.998 46 H 0.002 0.998 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 20.436 22.639 5.342 30.962 hybrid contribution -1.316 -0.243 0.681 1.502 sum 19.120 22.395 6.023 30.056 Atomic orbital electron populations 1.22448 0.87143 1.02031 1.01080 1.62040 1.08283 1.14979 1.42852 1.22433 1.01512 0.87591 1.00820 1.22749 0.96418 0.91537 0.92250 0.91693 1.22130 0.92383 0.97670 1.02661 1.22019 0.96413 0.94851 1.02102 1.22705 0.95224 0.98992 1.00358 1.21957 0.81442 0.94955 0.97716 0.91151 1.45953 1.17039 1.29665 1.43663 1.21161 0.87766 0.79873 0.81045 1.90700 1.73957 1.47496 1.34411 1.21675 0.91985 1.00360 1.02742 1.21239 0.95893 0.96959 0.99293 1.21444 0.94349 0.97906 0.99548 1.19052 0.94727 0.93523 0.94528 1.21730 1.01890 1.11641 1.22797 0.91540 1.26106 1.03146 0.95763 0.95423 1.70125 1.39577 1.16742 1.31450 0.85430 0.78612 0.77737 0.78835 1.18864 1.21076 1.18872 0.94300 0.91350 0.92487 0.90425 0.91237 0.94802 0.90803 0.89577 0.91786 0.89748 0.93171 0.90136 0.74933 0.86381 0.86453 0.93996 0.93980 0.92056 0.92068 0.99788 0.99788 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.06 127.69 1.16 1.49 16 2 N -0.56 -8.74 4.85 -916.91 -4.45 -13.18 16 3 C 0.02 0.26 9.20 127.69 1.17 1.44 16 4 C 0.08 1.10 2.23 45.99 0.10 1.20 16 5 H 0.07 0.73 8.02 -2.39 -0.02 0.71 16 6 C -0.11 -1.24 5.35 31.32 0.17 -1.07 16 7 C -0.12 -1.44 6.80 31.32 0.21 -1.23 16 8 C -0.13 -2.30 6.52 31.72 0.21 -2.10 16 9 C 0.14 2.82 2.29 46.34 0.11 2.92 16 10 H 0.07 1.93 7.55 -2.39 -0.02 1.91 16 11 N -0.71 -13.39 3.47 -436.17 -1.51 -14.90 16 12 C 0.51 14.08 7.69 87.66 0.67 14.75 16 13 O -0.59 -22.47 15.63 -3.01 -0.05 -22.52 16 14 C -0.13 -3.19 5.70 29.85 0.17 -3.02 16 15 C -0.10 -3.53 4.50 30.60 0.14 -3.39 16 16 C -0.09 -3.93 5.15 30.60 0.16 -3.77 16 17 C 0.02 1.05 4.97 29.85 0.15 1.20 16 18 C -0.54 -31.78 9.11 25.60 0.23 -31.55 16 19 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 20 C -0.01 -0.43 5.46 84.66 0.46 0.03 16 21 N -0.94 -59.72 13.29 21.45 0.28 -59.43 16 22 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 23 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 24 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 25 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 26 H 0.04 0.49 8.14 -2.38 -0.02 0.47 16 27 H 0.07 1.05 8.06 -2.38 -0.02 1.04 16 28 H 0.06 1.14 6.09 -2.38 -0.01 1.13 16 29 H 0.08 0.74 6.94 -2.39 -0.02 0.72 16 30 H 0.07 0.74 8.02 -2.39 -0.02 0.72 16 31 H 0.03 0.31 8.12 -2.39 -0.02 0.29 16 32 H 0.07 0.94 7.45 -2.39 -0.02 0.92 16 33 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.41 4.99 8.57 -92.71 -0.79 4.20 16 39 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 42 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 43 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 45 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 46 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 47 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -76.03 370.91 1.54 -74.49 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.12 Total: 11.52 kcal Atomic # 6 Polarization: -28.19 SS G_CDS: 5.11 Total: -23.08 kcal Atomic # 7 Polarization: -81.85 SS G_CDS: -5.67 Total: -87.52 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.05 Total: -22.52 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -76.03 1.54 -74.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597532905.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.213 kcal (2) G-P(sol) polarization free energy of solvation -76.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds