Wall clock time and date at job start Tue Mar 31 2020 05:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46900 * 111.00298 * 2 1 4 4 C 1.46904 * 110.99984 * 123.94834 * 2 1 3 5 5 C 1.53002 * 109.47015 * 66.04861 * 4 2 1 6 6 C 1.53003 * 109.47316 * 179.97438 * 5 4 2 7 7 C 1.52995 * 109.47013 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47212 * 179.97438 * 7 6 5 9 9 O 1.21281 * 119.99356 * 0.02562 * 8 7 6 10 10 N 1.34769 * 120.00297 * 180.02562 * 8 7 6 11 11 C 1.46928 * 120.63050 * 359.97438 * 10 8 7 12 12 C 1.53188 * 108.77345 * 126.41497 * 11 10 8 13 13 C 1.53038 * 109.31577 * 54.63596 * 12 11 10 14 14 C 1.53043 * 109.53602 * 298.63148 * 13 12 11 15 15 H 1.08997 * 109.50072 * 301.41544 * 14 13 12 16 16 C 1.50704 * 109.49459 * 181.31479 * 14 13 12 17 17 H 1.08000 * 120.00003 * 245.44703 * 16 14 13 18 18 C 1.37875 * 119.99825 * 65.45480 * 16 14 13 19 19 N 1.31516 * 120.00146 * 9.56915 * 18 16 14 20 20 Si 1.86800 * 119.99969 * 189.57584 * 18 16 14 21 21 H 1.48498 * 109.47500 * 94.98905 * 20 18 16 22 22 H 1.48507 * 109.47110 * 214.99019 * 20 18 16 23 23 H 1.48497 * 109.47091 * 334.98521 * 20 18 16 24 24 C 1.46929 * 120.63205 * 180.02562 * 10 8 7 25 25 H 1.09006 * 109.46873 * 296.05006 * 1 2 3 26 26 H 1.08995 * 109.47452 * 56.04607 * 1 2 3 27 27 H 1.09003 * 109.47170 * 176.05523 * 1 2 3 28 28 H 1.08997 * 109.47541 * 183.95605 * 3 2 1 29 29 H 1.09006 * 109.46726 * 303.95205 * 3 2 1 30 30 H 1.09000 * 109.47253 * 63.94753 * 3 2 1 31 31 H 1.08996 * 109.47780 * 306.04728 * 4 2 1 32 32 H 1.09001 * 109.46979 * 186.04510 * 4 2 1 33 33 H 1.09009 * 109.47446 * 59.99710 * 5 4 2 34 34 H 1.09001 * 109.46961 * 299.99660 * 5 4 2 35 35 H 1.09002 * 109.46663 * 60.00056 * 6 5 4 36 36 H 1.08992 * 109.47239 * 300.00140 * 6 5 4 37 37 H 1.09002 * 109.47051 * 60.00672 * 7 6 5 38 38 H 1.09001 * 109.47421 * 300.00128 * 7 6 5 39 39 H 1.09000 * 109.58720 * 246.19939 * 11 10 8 40 40 H 1.09000 * 109.58609 * 6.47938 * 11 10 8 41 41 H 1.09000 * 109.50240 * 294.67907 * 12 11 10 42 42 H 1.09001 * 109.49471 * 174.58659 * 12 11 10 43 43 H 1.09001 * 109.46070 * 178.61064 * 13 12 11 44 44 H 1.09001 * 109.46140 * 58.65145 * 13 12 11 45 45 H 0.97002 * 119.99918 * 179.97438 * 19 18 16 46 46 H 1.08998 * 109.58964 * 113.79614 * 24 10 8 47 47 H 1.09006 * 109.58709 * 353.36909 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6314 -2.2426 0.9705 6 6 2.1803 -3.0404 2.1551 7 6 1.8157 -4.5169 1.9882 8 6 2.3568 -5.3029 3.1546 9 8 2.9729 -4.7376 4.0331 10 7 2.1562 -6.6339 3.2215 11 6 1.4113 -7.3327 2.1653 12 6 2.2659 -8.4922 1.6440 13 6 2.6788 -9.3841 2.8171 14 6 3.5180 -8.5723 3.8064 15 1 4.3973 -8.1762 3.2984 16 6 3.9511 -9.4596 4.9450 17 1 3.5878 -9.2716 5.9445 18 6 4.8114 -10.5112 4.7106 19 7 5.4015 -10.6301 3.5413 20 14 5.1388 -11.7674 6.0539 21 1 4.2335 -12.9308 5.8750 22 1 6.5504 -12.2216 5.9736 23 1 4.8929 -11.1482 7.3811 24 6 2.6771 -7.4136 4.3527 25 1 -0.3633 0.4513 0.9233 26 1 -0.3634 0.5739 -0.8524 27 1 -0.3634 -1.0252 -0.0707 28 1 3.0828 1.3432 -0.0709 29 1 1.5898 1.9163 -0.8525 30 1 1.7043 1.8724 0.9232 31 1 1.5611 -0.3872 2.0629 32 1 3.0797 -0.6610 1.1757 33 1 2.0658 -2.6214 0.0453 34 1 0.5472 -2.3474 0.9325 35 1 1.7462 -2.6617 3.0805 36 1 3.2645 -2.9355 2.1927 37 1 2.2495 -4.8959 1.0628 38 1 0.7314 -4.6215 1.9508 39 1 0.4777 -7.7210 2.5722 40 1 1.1952 -6.6405 1.3515 41 1 3.1569 -8.0970 1.1562 42 1 1.6880 -9.0769 0.9282 43 1 3.2664 -10.2237 2.4457 44 1 1.7871 -9.7592 3.3195 45 1 6.0070 -11.3698 3.3765 46 1 1.8465 -7.8085 4.9377 47 1 3.2985 -6.7755 4.9810 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597912451.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:58 Heat of formation + Delta-G solvation = -57.109416 kcal Electronic energy + Delta-G solvation = -22438.904223 eV Core-core repulsion = 19234.593658 eV Total energy + Delta-G solvation = -3204.310565 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.65211 -38.02583 -36.82088 -34.40437 -33.42860 -31.41759 -30.53184 -29.39724 -27.88238 -25.77458 -24.99585 -24.04612 -22.03093 -21.63011 -20.89642 -19.69345 -18.19277 -16.78866 -16.20562 -16.11134 -15.66663 -15.30256 -15.20565 -14.83327 -14.55914 -14.15453 -13.55025 -13.31484 -13.10153 -12.77551 -12.70417 -12.59604 -12.41493 -12.19691 -12.01605 -11.97672 -11.92296 -11.32524 -11.25996 -11.11808 -10.96215 -10.82424 -10.73276 -10.55062 -10.31751 -10.05236 -9.73190 -9.50528 -9.23398 -8.84376 -8.65276 -8.36112 -7.87675 -6.04947 -4.07142 3.10766 3.29622 3.37074 3.40240 3.52754 3.73328 4.43430 4.66493 4.81499 4.84437 4.89628 5.05281 5.14858 5.21244 5.25378 5.31209 5.32947 5.37665 5.43590 5.52927 5.56521 5.60462 5.67762 5.70324 5.76476 5.78199 5.90154 6.10865 6.22241 6.30601 6.35353 6.39872 6.44718 6.65154 6.73280 6.75014 6.79161 6.98184 7.13076 7.25569 7.67648 7.89242 7.97800 8.04666 8.36832 8.70090 8.96871 9.56380 11.04109 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038614 B = 0.002739 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.959476 B =10218.932480 C =10479.015639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.549 5.549 3 C 0.024 3.976 4 C 0.053 3.947 5 C -0.116 4.116 6 C -0.102 4.102 7 C -0.137 4.137 8 C 0.507 3.493 9 O -0.553 6.553 10 N -0.606 5.606 11 C 0.110 3.890 12 C -0.135 4.135 13 C -0.106 4.106 14 C 0.038 3.962 15 H 0.036 0.964 16 C -0.517 4.517 17 H 0.057 0.943 18 C 0.065 3.935 19 N -0.887 5.887 20 Si 0.889 3.111 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.273 1.273 24 C 0.117 3.883 25 H 0.024 0.976 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.024 0.976 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.076 0.924 44 H 0.038 0.962 45 H 0.260 0.740 46 H 0.053 0.947 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.820 16.243 -8.924 21.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.273 5.273 3 C -0.125 4.125 4 C -0.074 4.074 5 C -0.154 4.154 6 C -0.141 4.141 7 C -0.177 4.177 8 C 0.294 3.706 9 O -0.432 6.432 10 N -0.338 5.338 11 C -0.013 4.013 12 C -0.174 4.174 13 C -0.144 4.144 14 C 0.019 3.981 15 H 0.054 0.946 16 C -0.555 4.555 17 H 0.075 0.925 18 C -0.137 4.137 19 N -0.525 5.525 20 Si 0.717 3.283 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.198 1.198 24 C -0.004 4.004 25 H 0.043 0.957 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.043 0.957 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.057 0.943 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.211 16.200 -8.982 21.151 hybrid contribution -0.114 -0.527 1.309 1.416 sum -10.324 15.673 -7.673 20.276 Atomic orbital electron populations 1.22442 0.87539 1.02521 1.00259 1.62000 1.08002 1.13724 1.43595 1.22381 1.00886 0.88864 1.00332 1.22183 1.00380 0.93956 0.90919 1.21621 1.00967 0.93668 0.99098 1.21285 1.02127 0.92652 0.98004 1.21665 1.02105 0.95949 0.98023 1.20596 0.80096 0.82262 0.87597 1.90654 1.42033 1.69449 1.41065 1.48341 1.54370 1.06765 1.24316 1.21716 0.94724 0.95010 0.89865 1.21992 0.99152 0.96733 0.99494 1.21563 0.98997 0.99156 0.94701 1.18994 0.93425 0.90896 0.94788 0.94557 1.21053 1.27792 1.12472 0.94210 0.92469 1.24937 0.95078 0.98053 0.95602 1.69976 1.28826 1.30890 1.22778 0.86620 0.77399 0.81839 0.82422 1.20700 1.21298 1.19816 1.21986 0.97574 0.93785 0.87065 0.95737 0.91603 0.90926 0.91284 0.91476 0.95750 0.94743 0.90583 0.90996 0.92007 0.91472 0.91066 0.89108 0.89487 0.92023 0.90964 0.92199 0.92434 0.90560 0.94315 0.92993 0.92914 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.32 60.06 0.56 0.72 16 2 N -0.55 -4.99 5.02 -251.26 -1.26 -6.25 16 3 C 0.02 0.18 9.57 60.06 0.57 0.75 16 4 C 0.05 0.50 4.96 -3.82 -0.02 0.48 16 5 C -0.12 -1.10 5.14 -26.73 -0.14 -1.23 16 6 C -0.10 -1.21 4.50 -26.73 -0.12 -1.33 16 7 C -0.14 -1.72 4.05 -27.88 -0.11 -1.83 16 8 C 0.51 9.05 7.70 -10.99 -0.08 8.97 16 9 O -0.55 -11.96 15.39 5.56 0.09 -11.88 16 10 N -0.61 -11.16 2.97 -172.74 -0.51 -11.67 16 11 C 0.11 1.65 6.34 -3.71 -0.02 1.63 16 12 C -0.14 -2.34 6.08 -26.61 -0.16 -2.50 16 13 C -0.11 -2.33 5.02 -26.69 -0.13 -2.47 16 14 C 0.04 0.94 2.12 -91.62 -0.19 0.75 16 15 H 0.04 1.02 8.09 -51.93 -0.42 0.60 16 16 C -0.52 -14.08 8.48 -34.44 -0.29 -14.37 16 17 H 0.06 1.54 7.77 -52.49 -0.41 1.14 16 18 C 0.07 1.80 5.19 -17.82 -0.09 1.71 16 19 N -0.89 -25.29 12.17 55.43 0.67 -24.62 16 20 Si 0.89 21.18 29.55 -169.99 -5.02 16.16 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 C 0.12 2.55 5.66 -3.69 -0.02 2.53 16 25 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.07 0.44 8.12 -51.93 -0.42 0.01 16 27 H 0.07 0.54 6.47 -51.93 -0.34 0.20 16 28 H 0.07 0.50 8.12 -51.93 -0.42 0.07 16 29 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 30 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.03 0.33 8.12 -51.93 -0.42 -0.09 16 32 H 0.08 0.72 8.06 -51.93 -0.42 0.31 16 33 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 34 H 0.06 0.54 6.55 -51.93 -0.34 0.20 16 35 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 36 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 37 H 0.09 1.03 7.69 -51.93 -0.40 0.63 16 38 H 0.09 0.90 7.94 -51.93 -0.41 0.49 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.85 5.93 -51.93 -0.31 0.54 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.08 1.89 6.88 -51.93 -0.36 1.54 16 44 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 46 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.08 1.88 7.01 -51.93 -0.36 1.52 16 LS Contribution 365.07 15.07 5.50 5.50 Total: -1.00 -30.75 365.07 -9.60 -40.36 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -8.81 Total: -1.41 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -0.26 Total: -6.20 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: -1.10 Total: -42.54 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.75 -9.60 -40.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597912451.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.753 kcal (2) G-P(sol) polarization free energy of solvation -30.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds