Wall clock time and date at job start Tue Mar 31 2020 05:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.44271 * 111.00122 * 2 1 4 4 C 1.54066 * 111.97379 * 219.31416 * 3 2 1 5 5 C 1.54427 * 112.37278 * 318.84620 * 4 3 2 6 6 C 1.50460 * 112.96140 * 318.48563 * 5 4 3 7 7 C 1.54510 * 108.96139 * 92.01666 * 6 5 4 8 8 H 1.08999 * 109.06341 * 43.22882 * 7 6 5 9 9 C 1.53003 * 109.05695 * 162.22125 * 7 6 5 10 10 N 1.46897 * 109.47133 * 184.99687 * 9 7 6 11 11 C 1.46897 * 111.00221 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47244 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.47007 * 299.99511 * 12 11 10 14 14 C 1.53002 * 109.47415 * 59.99651 * 12 11 10 15 15 C 1.53006 * 109.46936 * 179.97438 * 12 11 10 16 16 C 1.50700 * 109.46923 * 179.97438 * 15 12 11 17 17 H 1.07997 * 120.00040 * 0.02562 * 16 15 12 18 18 C 1.37873 * 119.99872 * 179.97438 * 16 15 12 19 19 N 1.31513 * 120.00148 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99918 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47402 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46967 * 120.00241 * 20 18 16 23 23 H 1.48501 * 109.47070 * 240.00216 * 20 18 16 24 24 C 1.45871 * 111.58445 * 282.75776 * 7 6 5 25 25 H 1.09001 * 109.46570 * 298.02225 * 1 2 3 26 26 H 1.08991 * 109.47044 * 58.02678 * 1 2 3 27 27 H 1.08999 * 109.47239 * 178.03008 * 1 2 3 28 28 H 1.08994 * 108.97639 * 339.95671 * 3 2 1 29 29 H 1.08998 * 108.97666 * 98.75760 * 3 2 1 30 30 H 1.09000 * 108.91933 * 79.64231 * 4 3 2 31 31 H 1.09001 * 108.91850 * 198.28511 * 4 3 2 32 32 H 1.09002 * 108.96327 * 197.47412 * 5 4 3 33 33 H 1.09007 * 108.65082 * 79.27419 * 5 4 3 34 34 H 1.09002 * 109.57372 * 332.13757 * 6 5 4 35 35 H 1.08998 * 109.57079 * 211.88898 * 6 5 4 36 36 H 1.09001 * 109.47031 * 304.99501 * 9 7 6 37 37 H 1.08996 * 109.47441 * 64.99804 * 9 7 6 38 38 H 1.00906 * 111.00444 * 303.95410 * 10 9 7 39 39 H 1.09004 * 109.46819 * 300.00081 * 11 10 9 40 40 H 1.08996 * 109.47232 * 59.99762 * 11 10 9 41 41 H 1.08998 * 109.46622 * 60.00214 * 13 12 11 42 42 H 1.08993 * 109.46795 * 180.02562 * 13 12 11 43 43 H 1.08996 * 109.47105 * 300.00290 * 13 12 11 44 44 H 1.09000 * 109.46559 * 59.99855 * 14 12 11 45 45 H 1.08997 * 109.46648 * 179.97438 * 14 12 11 46 46 H 1.08998 * 109.46762 * 300.00414 * 14 12 11 47 47 H 1.08996 * 109.46981 * 299.99588 * 15 12 11 48 48 H 1.09004 * 109.46774 * 60.00169 * 15 12 11 49 49 H 0.97000 * 120.00410 * 180.02562 * 19 18 16 50 50 H 1.08999 * 108.79601 * 182.21268 * 24 7 6 51 51 H 1.09002 * 108.79185 * 300.43989 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9861 1.3469 0.0000 4 6 3.2247 1.4889 -0.9052 5 6 4.1863 0.2873 -0.7784 6 6 4.3623 -0.1763 0.6422 7 6 3.3282 -1.2849 0.9403 8 1 3.2856 -1.9692 0.0929 9 6 3.7694 -2.0581 2.1847 10 7 2.8583 -3.1886 2.4074 11 6 3.2523 -3.9560 3.5964 12 6 2.2826 -5.1227 3.7949 13 6 0.8645 -4.5805 3.9848 14 6 2.3204 -6.0323 2.5652 15 6 2.6934 -5.9223 5.0330 16 6 1.7379 -7.0711 5.2288 17 1 0.9197 -7.2166 4.5390 18 6 1.9088 -7.9370 6.2880 19 7 2.9054 -7.7601 7.1277 20 14 0.7248 -9.3614 6.5304 21 1 -0.3014 -9.3403 5.4572 22 1 1.4736 -10.6426 6.4736 23 1 0.0613 -9.2340 7.8528 24 6 1.9987 -0.7307 1.1705 25 1 -0.3632 0.4828 0.9072 26 1 -0.3633 0.5441 -0.8717 27 1 -0.3634 -1.0270 -0.0353 28 1 1.2091 2.0248 -0.3533 29 1 2.2596 1.6215 1.0187 30 1 2.8973 1.5721 -1.9416 31 1 3.7609 2.3972 -0.6304 32 1 5.1602 0.5692 -1.1787 33 1 3.7921 -0.5387 -1.3706 34 1 4.2058 0.6615 1.3217 35 1 5.3695 -0.5711 0.7752 36 1 4.7832 -2.4315 2.0399 37 1 3.7461 -1.3966 3.0507 38 1 1.9024 -2.8738 2.4802 39 1 4.2625 -4.3426 3.4610 40 1 3.2258 -3.3079 4.4724 41 1 0.5721 -4.0111 3.1025 42 1 0.1738 -5.4116 4.1266 43 1 0.8375 -3.9325 4.8608 44 1 3.3307 -6.4185 2.4300 45 1 1.6299 -6.8636 2.7069 46 1 2.0281 -5.4628 1.6830 47 1 3.7035 -6.3086 4.8973 48 1 2.6667 -5.2745 5.9092 49 1 3.0259 -8.3695 7.8727 50 1 1.3162 -1.5449 1.4144 51 1 2.0449 -0.0481 2.0191 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598995460.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:21 Heat of formation + Delta-G solvation = -20.796516 kcal Electronic energy + Delta-G solvation = -23412.550715 eV Core-core repulsion = 20345.647890 eV Total energy + Delta-G solvation = -3066.902825 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.78239 -37.58853 -35.42060 -34.17036 -32.59072 -31.44917 -28.17872 -27.11644 -26.33929 -26.28397 -25.31694 -24.40632 -22.79402 -21.92110 -20.20663 -19.75734 -17.86049 -16.34503 -16.21061 -16.07713 -15.11587 -14.94875 -14.84127 -14.50410 -14.08757 -13.92385 -13.60677 -13.24363 -13.03836 -12.86449 -12.78052 -12.43536 -12.27389 -11.98252 -11.83307 -11.75938 -11.48632 -11.00830 -10.96997 -10.90080 -10.82891 -10.73540 -10.64085 -10.53594 -10.46773 -10.34845 -10.19001 -10.03319 -9.65701 -8.98836 -8.79054 -8.52432 -8.30427 -8.03714 -5.94729 -3.94669 3.33360 3.41196 3.44808 3.69743 4.38405 4.51281 4.63012 4.66806 4.82518 4.93141 5.07123 5.10161 5.14336 5.18162 5.30896 5.41175 5.47237 5.51914 5.60088 5.63522 5.67689 5.70224 5.74422 5.81860 5.84358 5.85513 6.00703 6.06537 6.07059 6.22896 6.23973 6.28179 6.35881 6.41212 6.53723 6.69798 6.81821 6.85634 6.87543 6.97182 7.23284 7.26587 7.29646 7.44838 7.70056 7.74120 7.88241 8.05931 8.50546 9.11065 9.68129 11.17028 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.034071 B = 0.003011 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.608012 B = 9295.592316 C = 9746.785946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.532 5.532 3 C 0.053 3.947 4 C -0.108 4.108 5 C -0.109 4.109 6 C -0.110 4.110 7 C -0.081 4.081 8 H 0.087 0.913 9 C 0.062 3.938 10 N -0.687 5.687 11 C 0.070 3.930 12 C -0.059 4.059 13 C -0.128 4.128 14 C -0.115 4.115 15 C 0.033 3.967 16 C -0.505 4.505 17 H 0.060 0.940 18 C 0.054 3.946 19 N -0.898 5.898 20 Si 0.887 3.113 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.286 1.286 24 C 0.059 3.941 25 H 0.023 0.977 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.039 0.961 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.022 0.978 38 H 0.335 0.665 39 H 0.066 0.934 40 H 0.021 0.979 41 H 0.031 0.969 42 H 0.064 0.936 43 H 0.039 0.961 44 H 0.039 0.961 45 H 0.053 0.947 46 H 0.042 0.958 47 H 0.015 0.985 48 H 0.012 0.988 49 H 0.258 0.742 50 H 0.072 0.928 51 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.508 18.831 -14.576 23.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.255 5.255 3 C -0.076 4.076 4 C -0.147 4.147 5 C -0.147 4.147 6 C -0.148 4.148 7 C -0.101 4.101 8 H 0.105 0.895 9 C -0.068 4.068 10 N -0.320 5.320 11 C -0.059 4.059 12 C -0.059 4.059 13 C -0.186 4.186 14 C -0.173 4.173 15 C -0.004 4.004 16 C -0.544 4.544 17 H 0.078 0.922 18 C -0.147 4.147 19 N -0.538 5.538 20 Si 0.715 3.285 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.212 1.212 24 C -0.068 4.068 25 H 0.042 0.958 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.040 0.960 38 H 0.155 0.845 39 H 0.084 0.916 40 H 0.040 0.960 41 H 0.050 0.950 42 H 0.083 0.917 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.061 0.939 47 H 0.033 0.967 48 H 0.030 0.970 49 H 0.068 0.932 50 H 0.090 0.910 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 0.037 18.106 -15.295 23.702 hybrid contribution -1.110 0.214 1.844 2.163 sum -1.073 18.321 -13.451 22.754 Atomic orbital electron populations 1.22474 0.87107 1.02501 1.00195 1.61541 1.07445 1.14493 1.42070 1.21941 0.97046 0.89643 0.98973 1.21947 0.95260 0.97808 0.99638 1.21191 0.98057 0.98441 0.96991 1.21357 0.98721 0.97786 0.96910 1.20200 0.93887 0.96744 0.99231 0.89463 1.22031 0.97696 0.91514 0.95566 1.60633 1.05932 1.23792 1.41600 1.22103 0.99811 0.94932 0.89038 1.20632 0.93390 0.93720 0.98167 1.21763 0.97833 1.00488 0.98470 1.21591 1.00878 0.98691 0.96112 1.19129 0.96604 0.94103 0.90580 1.21283 1.12145 1.10659 1.10272 0.92235 1.25020 0.95512 0.97895 0.96228 1.69977 1.30366 1.37875 1.15580 0.86614 0.81243 0.82701 0.77912 1.19765 1.21153 1.21220 1.21114 0.97328 0.97951 0.90399 0.95798 0.91507 0.91018 0.92182 0.94290 0.92173 0.92530 0.92990 0.91351 0.92525 0.91823 0.90902 0.95988 0.84478 0.91576 0.96049 0.94958 0.91701 0.94203 0.94184 0.92756 0.93855 0.96669 0.96981 0.93243 0.90952 0.95017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.19 60.07 0.55 0.77 16 2 N -0.53 -5.24 4.49 -247.88 -1.11 -6.36 16 3 C 0.05 0.46 5.18 -4.67 -0.02 0.44 16 4 C -0.11 -0.88 6.14 -25.43 -0.16 -1.03 16 5 C -0.11 -0.96 5.44 -27.25 -0.15 -1.11 16 6 C -0.11 -1.03 4.94 -27.21 -0.13 -1.16 16 7 C -0.08 -0.88 2.17 -93.20 -0.20 -1.08 16 8 H 0.09 1.07 7.59 -51.93 -0.39 0.68 16 9 C 0.06 0.77 5.07 -3.82 -0.02 0.75 16 10 N -0.69 -10.01 5.69 -113.78 -0.65 -10.66 16 11 C 0.07 1.22 4.65 -3.83 -0.02 1.21 16 12 C -0.06 -1.18 0.60 -154.50 -0.09 -1.27 16 13 C -0.13 -2.40 7.89 37.16 0.29 -2.11 16 14 C -0.12 -2.27 8.06 37.16 0.30 -1.97 16 15 C 0.03 0.85 4.04 -27.88 -0.11 0.73 16 16 C -0.51 -13.91 7.65 -34.44 -0.26 -14.17 16 17 H 0.06 1.60 5.68 -52.49 -0.30 1.30 16 18 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 19 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 20 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 C 0.06 0.63 4.03 -6.70 -0.03 0.60 16 25 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 26 H 0.07 0.50 8.01 -51.93 -0.42 0.09 16 27 H 0.07 0.63 8.05 -51.93 -0.42 0.21 16 28 H 0.06 0.47 7.49 -51.93 -0.39 0.08 16 29 H 0.04 0.35 6.50 -51.93 -0.34 0.02 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.69 7.39 -51.93 -0.38 0.30 16 34 H 0.06 0.53 7.15 -51.93 -0.37 0.16 16 35 H 0.06 0.58 7.96 -51.93 -0.41 0.17 16 36 H 0.07 0.92 8.05 -51.93 -0.42 0.50 16 37 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.34 4.71 4.79 -39.29 -0.19 4.52 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.03 0.51 6.57 -51.93 -0.34 0.17 16 42 H 0.06 1.32 6.62 -51.93 -0.34 0.97 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.05 1.14 6.62 -51.93 -0.34 0.79 16 46 H 0.04 0.77 7.60 -51.93 -0.39 0.37 16 47 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 49 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 50 H 0.07 0.81 5.88 -51.93 -0.31 0.51 16 51 H 0.03 0.34 7.24 -51.93 -0.38 -0.03 16 LS Contribution 371.88 15.07 5.60 5.60 Total: -1.00 -28.93 371.88 -10.51 -39.44 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -9.92 Total: -0.45 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: -0.15 Total: -17.97 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: -1.02 Total: -43.30 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.93 -10.51 -39.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598995460.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.642 kcal (2) G-P(sol) polarization free energy of solvation -28.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds