Wall clock time and date at job start Tue Mar 31 2020 05:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47952 * 110.99395 * 2 1 4 4 C 1.53915 * 113.32962 * 192.17636 * 3 2 1 5 5 C 1.50541 * 112.93467 * 317.76089 * 4 3 2 6 6 C 1.54515 * 108.85430 * 91.75891 * 5 4 3 7 7 C 1.45884 * 111.68072 * 282.73977 * 6 5 4 8 8 H 1.08998 * 108.84786 * 300.78096 * 7 6 5 9 9 C 1.53004 * 108.84313 * 182.31582 * 7 6 5 10 10 N 1.46901 * 109.46517 * 175.00364 * 9 7 6 11 11 C 1.46904 * 110.99637 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47265 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.46925 * 59.99835 * 12 11 10 14 14 C 1.53001 * 109.47173 * 300.00145 * 12 11 10 15 15 C 1.52999 * 109.47415 * 179.97438 * 12 11 10 16 16 C 1.50695 * 109.47057 * 180.02562 * 15 12 11 17 17 H 1.07999 * 120.00538 * 359.97438 * 16 15 12 18 18 C 1.37881 * 119.99661 * 179.97438 * 16 15 12 19 19 N 1.31520 * 120.00186 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00030 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47297 * 89.99863 * 20 18 16 22 22 H 1.48503 * 109.47261 * 330.00044 * 20 18 16 23 23 H 1.48500 * 109.47454 * 210.00037 * 20 18 16 24 24 C 1.44297 * 111.00022 * 232.58089 * 2 1 3 25 25 H 1.08994 * 109.47013 * 56.04632 * 1 2 3 26 26 H 1.09000 * 109.46849 * 176.04467 * 1 2 3 27 27 H 1.09003 * 109.47290 * 296.04159 * 1 2 3 28 28 H 1.09007 * 108.70978 * 71.18489 * 3 2 1 29 29 H 1.08991 * 108.71425 * 313.16988 * 3 2 1 30 30 H 1.08998 * 108.79480 * 196.87262 * 4 3 2 31 31 H 1.08997 * 108.69997 * 78.58918 * 4 3 2 32 32 H 1.09002 * 109.57383 * 331.95034 * 5 4 3 33 33 H 1.08998 * 109.67948 * 211.63454 * 5 4 3 34 34 H 1.08997 * 109.03878 * 162.17767 * 6 5 4 35 35 H 1.08991 * 108.98055 * 43.26732 * 6 5 4 36 36 H 1.08994 * 109.47370 * 55.00044 * 9 7 6 37 37 H 1.09000 * 109.46689 * 294.99466 * 9 7 6 38 38 H 1.00898 * 110.99992 * 303.94647 * 10 9 7 39 39 H 1.09002 * 109.47117 * 59.99370 * 11 10 9 40 40 H 1.08998 * 109.47117 * 299.99488 * 11 10 9 41 41 H 1.09004 * 109.47362 * 179.97438 * 13 12 11 42 42 H 1.09000 * 109.47334 * 300.00107 * 13 12 11 43 43 H 1.08998 * 109.47242 * 60.00321 * 13 12 11 44 44 H 1.09004 * 109.46849 * 299.99480 * 14 12 11 45 45 H 1.09001 * 109.47508 * 59.99441 * 14 12 11 46 46 H 1.09000 * 109.47315 * 179.97438 * 14 12 11 47 47 H 1.09002 * 109.46997 * 59.99676 * 15 12 11 48 48 H 1.09000 * 109.46625 * 300.00101 * 15 12 11 49 49 H 0.97001 * 119.99697 * 359.97438 * 19 18 16 50 50 H 1.09002 * 109.69408 * 101.63447 * 24 2 1 51 51 H 1.08997 * 109.69386 * 341.05602 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3813 0.0000 4 6 3.5073 1.4554 -0.2981 5 6 4.2989 0.3910 0.4136 6 6 4.4181 -0.8431 -0.5086 7 6 3.1842 -1.6212 -0.5298 8 1 2.9575 -1.9496 0.4845 9 6 3.3921 -2.8533 -1.4127 10 7 2.1993 -3.7084 -1.3487 11 6 2.3629 -4.9038 -2.1867 12 6 1.1038 -5.7679 -2.0940 13 6 -0.1033 -4.9643 -2.5819 14 6 0.8812 -6.1906 -0.6405 15 6 1.2739 -7.0126 -2.9673 16 6 0.0334 -7.8633 -2.8764 17 1 -0.7935 -7.5481 -2.2574 18 6 -0.0459 -9.0443 -3.5837 19 7 0.9608 -9.4280 -4.3380 20 14 -1.5833 -10.0993 -3.4705 21 1 -2.5430 -9.6907 -4.5276 22 1 -2.2102 -9.9192 -2.1364 23 1 -1.2190 -11.5267 -3.6575 24 6 1.9861 -0.8186 -1.0699 25 1 -0.3633 0.5739 -0.8524 26 1 -0.3633 -1.0252 -0.0709 27 1 -0.3634 0.4512 0.9233 28 1 1.8135 1.8271 0.9773 29 1 1.4650 1.9608 -0.7529 30 1 3.8783 2.4332 0.0091 31 1 3.6570 1.3453 -1.3721 32 1 3.7881 0.1105 1.3347 33 1 5.2940 0.7688 0.6483 34 1 5.2312 -1.4758 -0.1527 35 1 4.6450 -0.5087 -1.5208 36 1 4.2589 -3.4117 -1.0591 37 1 3.5583 -2.5382 -2.4429 38 1 1.9864 -3.9612 -0.3954 39 1 3.2227 -5.4764 -1.8389 40 1 2.5218 -4.6026 -3.2222 41 1 -1.0003 -5.5800 -2.5163 42 1 -0.2247 -4.0773 -1.9600 43 1 0.0552 -4.6631 -3.6174 44 1 1.7412 -6.7632 -0.2929 45 1 0.7599 -5.3037 -0.0186 46 1 -0.0161 -6.8059 -0.5743 47 1 2.1339 -7.5852 -2.6202 48 1 1.4321 -6.7110 -4.0027 49 1 1.7590 -8.8799 -4.3971 50 1 2.3110 -0.1836 -1.8941 51 1 1.2116 -1.5029 -1.4161 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598995461.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:23 Heat of formation + Delta-G solvation = -27.530502 kcal Electronic energy + Delta-G solvation = -23539.152138 eV Core-core repulsion = 20471.957305 eV Total energy + Delta-G solvation = -3067.194833 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.61204 -37.65257 -35.49397 -34.25016 -32.74034 -31.47780 -27.96825 -26.77421 -26.41844 -26.27628 -25.29394 -24.17845 -22.72079 -21.85094 -20.37491 -19.77616 -18.11040 -16.41194 -16.34781 -15.81183 -15.58521 -15.03787 -14.59344 -14.18868 -13.87570 -13.69373 -13.59184 -13.41211 -13.25549 -12.95466 -12.83971 -12.48266 -12.25266 -11.86323 -11.84687 -11.57679 -11.39036 -11.10902 -11.00721 -10.95552 -10.85997 -10.81975 -10.59062 -10.52645 -10.50329 -10.46598 -10.09535 -9.92194 -9.75385 -9.23545 -8.37013 -8.30369 -8.25224 -8.04941 -6.27326 -3.94791 3.46841 3.50220 3.65536 3.79691 4.34564 4.58073 4.62788 4.71278 4.80317 4.91172 5.02185 5.18427 5.26737 5.34993 5.44618 5.47770 5.49613 5.52350 5.59014 5.65788 5.68844 5.74549 5.80902 5.82183 5.85080 5.86862 5.91608 5.94726 6.09959 6.17039 6.21795 6.24020 6.31828 6.39959 6.46582 6.60689 6.73589 6.78788 7.02742 7.14528 7.16309 7.19383 7.22396 7.38559 7.45977 7.60911 7.72045 8.32867 8.55899 8.97754 9.75837 11.12687 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.032646 B = 0.003133 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.485241 B = 8935.830283 C = 9455.369698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.553 5.553 3 C 0.063 3.937 4 C -0.119 4.119 5 C -0.110 4.110 6 C -0.111 4.111 7 C -0.078 4.078 8 H 0.075 0.925 9 C 0.059 3.941 10 N -0.684 5.684 11 C 0.069 3.931 12 C -0.051 4.051 13 C -0.113 4.113 14 C -0.127 4.127 15 C 0.020 3.980 16 C -0.586 4.586 17 H 0.053 0.947 18 C 0.011 3.989 19 N -0.919 5.919 20 Si 1.068 2.932 21 H -0.289 1.289 22 H -0.289 1.289 23 H -0.286 1.286 24 C 0.071 3.929 25 H 0.021 0.979 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.028 0.972 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.025 0.975 37 H 0.065 0.935 38 H 0.339 0.661 39 H 0.020 0.980 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.043 0.957 43 H 0.037 0.963 44 H 0.038 0.962 45 H 0.035 0.965 46 H 0.064 0.936 47 H 0.002 0.998 48 H 0.004 0.996 49 H 0.268 0.732 50 H 0.034 0.966 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.561 21.488 9.456 23.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.277 5.277 3 C -0.065 4.065 4 C -0.157 4.157 5 C -0.147 4.147 6 C -0.149 4.149 7 C -0.097 4.097 8 H 0.093 0.907 9 C -0.071 4.071 10 N -0.316 5.316 11 C -0.059 4.059 12 C -0.052 4.052 13 C -0.171 4.171 14 C -0.185 4.185 15 C -0.017 4.017 16 C -0.625 4.625 17 H 0.071 0.929 18 C -0.192 4.192 19 N -0.556 5.556 20 Si 0.897 3.103 21 H -0.216 1.216 22 H -0.215 1.215 23 H -0.212 1.212 24 C -0.057 4.057 25 H 0.040 0.960 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.043 0.957 37 H 0.084 0.916 38 H 0.158 0.842 39 H 0.039 0.961 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.083 0.917 47 H 0.021 0.979 48 H 0.023 0.977 49 H 0.078 0.922 50 H 0.052 0.948 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.684 20.233 8.838 22.384 hybrid contribution 1.178 1.271 0.218 1.747 sum 4.862 21.504 9.056 23.834 Atomic orbital electron populations 1.22400 0.86924 1.02303 1.00123 1.60640 1.07313 1.11987 1.47762 1.22378 0.94716 0.88827 1.00556 1.21385 0.94256 0.99307 1.00775 1.21254 0.99073 0.95003 0.99405 1.20592 0.97718 0.96996 0.99578 1.20054 0.94793 0.94673 1.00202 0.90678 1.22070 0.91535 0.93606 0.99890 1.60543 1.36125 1.19673 1.15243 1.22096 0.97439 0.89472 0.96928 1.20475 0.93151 0.95489 0.96064 1.21573 0.98029 0.98217 0.99261 1.21750 1.02012 0.99201 0.95506 1.19249 0.97214 0.91589 0.93659 1.22052 1.02037 1.07557 1.30821 0.92878 1.25785 1.02817 0.96965 0.93636 1.70747 1.06168 1.40653 1.37986 0.83559 0.74759 0.76189 0.75806 1.21608 1.21544 1.21189 1.21846 0.97852 0.95197 0.90799 0.96027 0.90790 0.91966 0.91458 0.95374 0.91796 0.92356 0.90894 0.92469 0.92384 0.92601 0.95714 0.91603 0.84216 0.96134 0.91863 0.92646 0.93819 0.94416 0.94288 0.94599 0.91671 0.97940 0.97728 0.92200 0.94804 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.49 60.07 0.57 0.87 16 2 N -0.55 -5.74 4.25 -242.92 -1.03 -6.77 16 3 C 0.06 0.56 5.44 -2.77 -0.02 0.54 16 4 C -0.12 -0.97 5.28 -27.48 -0.15 -1.11 16 5 C -0.11 -0.93 5.63 -27.16 -0.15 -1.08 16 6 C -0.11 -1.04 4.52 -29.30 -0.13 -1.17 16 7 C -0.08 -0.83 1.97 -93.47 -0.18 -1.02 16 8 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 9 C 0.06 0.73 4.99 -3.82 -0.02 0.71 16 10 N -0.68 -9.76 4.74 -113.78 -0.54 -10.30 16 11 C 0.07 1.21 4.65 -3.82 -0.02 1.19 16 12 C -0.05 -1.03 0.60 -154.51 -0.09 -1.13 16 13 C -0.11 -2.22 8.06 37.16 0.30 -1.92 16 14 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 15 C 0.02 0.51 3.35 -27.89 -0.09 0.42 16 16 C -0.59 -16.31 7.65 -34.44 -0.26 -16.58 16 17 H 0.05 1.45 5.68 -52.49 -0.30 1.16 16 18 C 0.01 0.32 5.46 -17.82 -0.10 0.22 16 19 N -0.92 -28.41 13.65 55.43 0.76 -27.65 16 20 Si 1.07 25.60 29.90 -169.99 -5.08 20.51 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 C 0.07 0.79 4.75 -4.70 -0.02 0.77 16 25 H 0.02 0.20 8.02 -51.93 -0.42 -0.21 16 26 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.03 0.25 7.93 -51.93 -0.41 -0.16 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.50 6.65 -51.93 -0.35 0.16 16 32 H 0.07 0.69 7.78 -51.93 -0.40 0.29 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 35 H 0.06 0.52 7.58 -51.93 -0.39 0.13 16 36 H 0.02 0.31 8.08 -51.93 -0.42 -0.11 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.34 4.78 6.77 -39.29 -0.27 4.51 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.05 1.17 6.62 -51.93 -0.34 0.83 16 42 H 0.04 0.76 7.60 -51.93 -0.39 0.36 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.04 0.58 6.57 -51.93 -0.34 0.23 16 46 H 0.06 1.35 6.62 -51.93 -0.34 1.01 16 47 H 0.00 0.06 8.01 -51.93 -0.42 -0.35 16 48 H 0.00 0.12 8.01 -51.93 -0.42 -0.29 16 49 H 0.27 8.27 7.22 -40.82 -0.29 7.97 16 50 H 0.03 0.38 6.79 -51.93 -0.35 0.03 16 51 H 0.09 1.17 6.39 -51.93 -0.33 0.84 16 LS Contribution 373.11 15.07 5.62 5.62 Total: -1.00 -29.26 373.11 -10.38 -39.64 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -10.03 Total: 0.37 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: -0.07 Total: -21.42 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: -0.82 Total: -44.73 kcal Atomic # 14 Polarization: 25.60 SS G_CDS: -5.08 Total: 20.51 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.26 -10.38 -39.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598995461.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.113 kcal (2) G-P(sol) polarization free energy of solvation -29.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds