Wall clock time and date at job start Tue Mar 31 2020 06:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47018 * 2 1 4 4 C 1.53002 * 109.47212 * 119.99955 * 2 1 3 5 5 C 1.52992 * 109.46991 * 65.00448 * 4 2 1 6 6 C 1.53002 * 109.47450 * 179.97438 * 5 4 2 7 7 C 1.52995 * 109.47461 * 185.49097 * 6 5 4 8 8 H 1.08998 * 109.46968 * 57.48507 * 7 6 5 9 9 C 1.52993 * 109.47045 * 297.48263 * 7 6 5 10 10 N 1.46903 * 109.46888 * 177.48459 * 7 6 5 11 11 C 1.46955 * 111.00181 * 304.94820 * 10 7 6 12 12 C 1.53049 * 109.36639 * 176.81737 * 11 10 7 13 13 N 1.46952 * 109.36562 * 58.39719 * 12 11 10 14 14 C 1.46903 * 110.99649 * 176.81478 * 13 12 11 15 15 C 1.50691 * 109.47210 * 59.38880 * 14 13 12 16 16 H 1.07996 * 120.00335 * 4.37361 * 15 14 13 17 17 C 1.37877 * 120.00009 * 184.37681 * 15 14 13 18 18 N 1.31518 * 119.99984 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00290 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47277 * 59.99589 * 19 17 15 21 21 H 1.48499 * 109.47245 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46902 * 299.99635 * 19 17 15 23 23 C 1.46955 * 110.88212 * 300.68364 * 13 12 11 24 24 C 1.46962 * 111.00033 * 181.14913 * 10 7 6 25 25 H 1.09003 * 109.47393 * 299.99562 * 1 2 3 26 26 H 1.09000 * 109.47478 * 60.00176 * 1 2 3 27 27 H 1.09007 * 109.46980 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47393 * 240.00438 * 2 1 3 29 29 H 1.09003 * 109.47069 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47009 * 300.00678 * 3 2 1 31 31 H 1.09003 * 109.46681 * 60.00002 * 3 2 1 32 32 H 1.09000 * 109.47517 * 304.99724 * 4 2 1 33 33 H 1.09013 * 109.46828 * 185.00343 * 4 2 1 34 34 H 1.09000 * 109.47520 * 59.99869 * 5 4 2 35 35 H 1.09000 * 109.47536 * 299.99890 * 5 4 2 36 36 H 1.09007 * 109.46929 * 65.48348 * 6 5 4 37 37 H 1.09005 * 109.47141 * 305.49581 * 6 5 4 38 38 H 1.08996 * 109.47681 * 180.02562 * 9 7 6 39 39 H 1.09008 * 109.47425 * 299.99910 * 9 7 6 40 40 H 1.08995 * 109.47433 * 60.00099 * 9 7 6 41 41 H 1.09003 * 109.48637 * 296.78151 * 11 10 7 42 42 H 1.08996 * 109.48957 * 56.84501 * 11 10 7 43 43 H 1.09006 * 109.48712 * 298.43200 * 12 11 10 44 44 H 1.08998 * 109.48968 * 178.37155 * 12 11 10 45 45 H 1.08998 * 109.46761 * 179.38889 * 14 13 12 46 46 H 1.09002 * 109.47360 * 299.38487 * 14 13 12 47 47 H 0.97003 * 120.00265 * 180.02562 * 18 17 15 48 48 H 1.09003 * 109.48637 * 299.35268 * 23 13 12 49 49 H 1.09005 * 109.48530 * 179.29273 * 23 13 12 50 50 H 1.09003 * 109.48442 * 303.16091 * 24 10 7 51 51 H 1.09000 * 109.48823 * 63.19629 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1879 6 6 2.1459 -2.9169 2.4368 7 6 1.8618 -4.4151 2.3123 8 1 2.3325 -4.8002 1.4078 9 6 0.3508 -4.6431 2.2377 10 7 2.4054 -5.1155 3.4836 11 6 3.8355 -4.8235 3.6550 12 6 4.3439 -5.5060 4.9271 13 7 4.1130 -6.9539 4.8288 14 6 4.6567 -7.6544 6.0000 15 6 3.9964 -7.1311 7.2494 16 1 3.1984 -6.4072 7.1759 17 6 4.4111 -7.5766 8.4866 18 7 5.3826 -8.4585 8.5763 19 14 3.5922 -6.9285 10.0355 20 1 2.1439 -7.2552 10.0035 21 1 4.2154 -7.5600 11.2263 22 1 3.7659 -5.4554 10.1079 23 6 2.6830 -7.2459 4.6574 24 6 2.1746 -6.5636 3.3854 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6765 1.9563 0.8900 32 1 1.6054 -0.2617 2.1370 33 1 3.1264 -0.6442 1.2951 34 1 2.0700 -2.6549 0.3002 35 1 0.5490 -2.2725 1.1420 36 1 1.6382 -2.5226 3.3172 37 1 3.2197 -2.7576 2.5350 38 1 0.1482 -5.7105 2.1495 39 1 -0.1200 -4.2580 3.1423 40 1 -0.0527 -4.1234 1.3687 41 1 4.3890 -5.1994 2.7946 42 1 3.9793 -3.7463 3.7379 43 1 3.8092 -5.1103 5.7906 44 1 5.4109 -5.3147 5.0408 45 1 4.4627 -8.7229 5.9067 46 1 5.7318 -7.4841 6.0586 47 1 5.6742 -8.7722 9.4467 48 1 2.1295 -6.8700 5.5178 49 1 2.5393 -8.3233 4.5745 50 1 1.1076 -6.7548 3.2716 51 1 2.7090 -6.9592 2.5216 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601314909.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:27 Heat of formation + Delta-G solvation = -39.932681 kcal Electronic energy + Delta-G solvation = -23115.721730 eV Core-core repulsion = 20047.989098 eV Total energy + Delta-G solvation = -3067.732632 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.49410 -38.40171 -37.17532 -34.92890 -33.70031 -32.03561 -31.00857 -28.95053 -27.99852 -27.34683 -26.51328 -24.21275 -23.74328 -22.80949 -21.06608 -20.78476 -20.47054 -18.48676 -17.38916 -16.59612 -16.57493 -15.96523 -15.75755 -15.68948 -15.41525 -15.00882 -14.96974 -14.81727 -14.48349 -13.92934 -13.78975 -13.55340 -13.43363 -13.04523 -13.00227 -12.82826 -12.81485 -12.55147 -12.44391 -12.33089 -12.23392 -12.12609 -12.08828 -12.02638 -11.81837 -11.61802 -11.51872 -11.37122 -11.25923 -11.12892 -10.93178 -10.61165 -9.24113 -9.00954 -8.16181 -6.35826 1.36051 1.37727 1.46117 2.36778 2.93538 3.08158 3.37886 3.77670 3.97008 4.02750 4.10062 4.12499 4.15168 4.26234 4.42542 4.46861 4.48667 4.53574 4.54228 4.63092 4.72032 4.76046 4.80354 4.85291 4.86179 4.92806 4.94417 4.98961 5.05960 5.11407 5.13560 5.15103 5.16721 5.20972 5.23651 5.27104 5.30008 5.32858 5.39080 5.43858 5.48251 5.60413 5.62210 5.72579 6.03029 6.15957 6.18151 6.35741 6.52023 6.84604 7.35387 8.86150 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.024613 B = 0.003016 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.344926 B = 9281.103783 C = 9633.924507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 C -0.148 4.148 4 C -0.113 4.113 5 C -0.110 4.110 6 C -0.110 4.110 7 C 0.082 3.918 8 H 0.037 0.963 9 C -0.141 4.141 10 N -0.545 5.545 11 C 0.069 3.931 12 C 0.067 3.933 13 N -0.545 5.545 14 C 0.200 3.800 15 C -0.555 4.555 16 H 0.055 0.945 17 C 0.011 3.989 18 N -0.927 5.927 19 Si 0.958 3.042 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.270 1.270 23 C 0.065 3.935 24 C 0.069 3.931 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.078 0.922 41 H 0.034 0.966 42 H 0.093 0.907 43 H 0.023 0.977 44 H 0.060 0.940 45 H 0.003 0.997 46 H 0.006 0.994 47 H 0.265 0.735 48 H 0.022 0.978 49 H 0.063 0.937 50 H 0.093 0.907 51 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.140 15.984 -18.259 26.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.116 4.116 3 C -0.206 4.206 4 C -0.150 4.150 5 C -0.148 4.148 6 C -0.148 4.148 7 C -0.026 4.026 8 H 0.055 0.945 9 C -0.199 4.199 10 N -0.271 5.271 11 C -0.059 4.059 12 C -0.061 4.061 13 N -0.269 5.269 14 C 0.074 3.926 15 C -0.594 4.594 16 H 0.073 0.927 17 C -0.188 4.188 18 N -0.566 5.566 19 Si 0.783 3.217 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.195 1.195 23 C -0.064 4.064 24 C -0.059 4.059 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.097 0.903 41 H 0.052 0.948 42 H 0.111 0.889 43 H 0.041 0.959 44 H 0.078 0.922 45 H 0.021 0.979 46 H 0.024 0.976 47 H 0.074 0.926 48 H 0.040 0.960 49 H 0.081 0.919 50 H 0.112 0.888 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -10.032 15.875 -18.149 26.116 hybrid contribution 0.135 -0.234 1.347 1.374 sum -9.897 15.641 -16.802 24.998 Atomic orbital electron populations 1.21891 0.95007 1.02012 1.01671 1.21121 0.96169 0.96179 0.98089 1.21850 1.00914 0.95960 1.01830 1.21629 1.00563 0.94963 0.97891 1.21603 1.01562 0.94786 0.96863 1.21669 1.01095 0.93047 0.98986 1.21701 0.96262 0.94455 0.90135 0.94494 1.21886 0.93768 1.01789 1.02423 1.62175 1.15393 1.08531 1.40978 1.22134 0.87699 1.00179 0.95902 1.21923 0.99363 0.88144 0.96709 1.62627 1.15169 1.08681 1.40378 1.19383 0.94140 0.92885 0.86214 1.21915 1.19315 1.25227 0.92916 0.92737 1.25827 0.95467 0.95078 1.02452 1.70060 1.29160 1.31812 1.25605 0.85611 0.78814 0.78735 0.78549 1.19561 1.20516 1.19536 1.21957 0.88589 0.99065 0.96769 1.22118 1.00877 0.87189 0.95681 0.92974 0.92506 0.92261 0.91318 0.92835 0.92306 0.92888 0.92357 0.92442 0.92023 0.90845 0.92098 0.92230 0.92741 0.92680 0.90282 0.94766 0.88918 0.95862 0.92197 0.97909 0.97604 0.92563 0.95986 0.91875 0.88845 0.94677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.95 71.98 0.64 -1.11 16 2 C -0.10 -1.23 2.92 -10.79 -0.03 -1.26 16 3 C -0.15 -1.78 9.19 71.98 0.66 -1.11 16 4 C -0.11 -1.64 4.68 30.59 0.14 -1.50 16 5 C -0.11 -1.68 4.52 30.59 0.14 -1.54 16 6 C -0.11 -2.19 4.41 30.59 0.13 -2.05 16 7 C 0.08 1.86 2.17 44.91 0.10 1.96 16 8 H 0.04 0.84 8.14 -2.39 -0.02 0.83 16 9 C -0.14 -2.74 8.70 71.98 0.63 -2.11 16 10 N -0.55 -16.34 4.58 -870.51 -3.99 -20.32 16 11 C 0.07 2.19 5.20 86.31 0.45 2.64 16 12 C 0.07 2.77 5.24 86.31 0.45 3.23 16 13 N -0.54 -24.72 4.92 -900.32 -4.43 -29.14 16 14 C 0.20 10.99 5.14 85.55 0.44 11.43 16 15 C -0.55 -31.77 7.66 25.60 0.20 -31.57 16 16 H 0.05 3.12 5.82 -2.91 -0.02 3.10 16 17 C 0.01 0.64 5.46 84.65 0.46 1.10 16 18 N -0.93 -56.23 13.29 21.45 0.28 -55.95 16 19 Si 0.96 44.95 29.54 68.60 2.03 46.98 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 22 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 23 C 0.06 2.64 5.31 86.30 0.46 3.10 16 24 C 0.07 2.18 5.34 86.30 0.46 2.64 16 25 H 0.05 0.63 8.14 -2.39 -0.02 0.62 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.06 0.68 6.56 -2.38 -0.02 0.67 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.07 1.03 5.21 -2.39 -0.01 1.02 16 36 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.06 1.24 6.12 -2.38 -0.01 1.23 16 38 H 0.05 1.06 6.36 -2.39 -0.02 1.05 16 39 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.08 1.19 6.62 -2.39 -0.02 1.17 16 41 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.09 2.58 5.99 -2.39 -0.01 2.57 16 43 H 0.02 1.07 6.63 -2.38 -0.02 1.05 16 44 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.00 0.16 8.12 -2.39 -0.02 0.14 16 46 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 47 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 48 H 0.02 1.00 6.76 -2.39 -0.02 0.98 16 49 H 0.06 2.55 8.13 -2.38 -0.02 2.53 16 50 H 0.09 2.54 6.17 -2.39 -0.01 2.52 16 51 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -62.81 375.61 0.08 -62.72 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 0.85 Total: 11.89 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: 5.33 Total: -16.18 kcal Atomic # 7 Polarization: -97.29 SS G_CDS: -8.13 Total: -105.41 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -62.81 0.08 -62.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601314909.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.792 kcal (2) G-P(sol) polarization free energy of solvation -62.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds