Wall clock time and date at job start Tue Mar 31 2020 06:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47179 * 2 1 4 4 C 1.53002 * 109.46826 * 119.99852 * 2 1 3 5 5 C 1.52999 * 109.47072 * 65.00532 * 4 2 1 6 6 C 1.53002 * 109.47072 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47053 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.46789 * 55.00181 * 7 6 5 9 9 C 1.52994 * 109.47086 * 174.99513 * 7 6 5 10 10 N 1.46900 * 109.47369 * 295.00178 * 7 6 5 11 11 C 1.46959 * 110.99676 * 298.79494 * 10 7 6 12 12 C 1.53045 * 109.36109 * 176.80829 * 11 10 7 13 13 N 1.46960 * 109.36458 * 58.40878 * 12 11 10 14 14 C 1.46897 * 111.00394 * 176.80600 * 13 12 11 15 15 C 1.50705 * 109.46835 * 58.98728 * 14 13 12 16 16 H 1.08001 * 119.99780 * 4.99508 * 15 14 13 17 17 C 1.37878 * 119.99895 * 184.98620 * 15 14 13 18 18 N 1.31508 * 120.00011 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 119.99957 * 0.02562 * 17 15 14 20 20 H 1.48507 * 109.47123 * 89.99957 * 19 17 15 21 21 H 1.48507 * 109.47162 * 209.99809 * 19 17 15 22 22 H 1.48502 * 109.47321 * 329.99963 * 19 17 15 23 23 C 1.46955 * 110.87704 * 300.67593 * 13 12 11 24 24 C 1.46952 * 111.00090 * 175.00065 * 10 7 6 25 25 H 1.09005 * 109.46610 * 59.99920 * 1 2 3 26 26 H 1.08999 * 109.46852 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46984 * 300.00384 * 1 2 3 28 28 H 1.08998 * 109.47402 * 239.99953 * 2 1 3 29 29 H 1.08996 * 109.47482 * 179.97438 * 3 2 1 30 30 H 1.09005 * 109.47415 * 299.99587 * 3 2 1 31 31 H 1.09007 * 109.47092 * 59.99494 * 3 2 1 32 32 H 1.08998 * 109.47288 * 305.00103 * 4 2 1 33 33 H 1.09004 * 109.46693 * 184.99999 * 4 2 1 34 34 H 1.08998 * 109.47414 * 59.99648 * 5 4 2 35 35 H 1.09008 * 109.46752 * 299.99799 * 5 4 2 36 36 H 1.08998 * 109.47288 * 59.99571 * 6 5 4 37 37 H 1.08996 * 109.46915 * 299.99229 * 6 5 4 38 38 H 1.09004 * 109.47221 * 60.00598 * 9 7 6 39 39 H 1.09000 * 109.47581 * 179.97438 * 9 7 6 40 40 H 1.08993 * 109.47927 * 300.00584 * 9 7 6 41 41 H 1.08994 * 109.49223 * 296.78441 * 11 10 7 42 42 H 1.09007 * 109.48345 * 56.84899 * 11 10 7 43 43 H 1.09000 * 109.49601 * 298.43656 * 12 11 10 44 44 H 1.09004 * 109.48737 * 178.36947 * 12 11 10 45 45 H 1.08992 * 109.47311 * 178.98599 * 14 13 12 46 46 H 1.09004 * 109.47044 * 298.99739 * 14 13 12 47 47 H 0.96999 * 120.00546 * 180.02562 * 18 17 15 48 48 H 1.09005 * 109.49003 * 299.35247 * 23 13 12 49 49 H 1.08997 * 109.48962 * 179.28717 * 23 13 12 50 50 H 1.09004 * 109.48601 * 303.15243 * 24 10 7 51 51 H 1.09003 * 109.48980 * 63.19487 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1955 1.1880 6 6 2.1458 -2.9168 2.4370 7 6 1.7405 -4.3909 2.3759 8 1 2.0996 -4.8281 1.4442 9 6 2.3560 -5.1385 3.5604 10 7 0.2767 -4.4993 2.4355 11 6 -0.2416 -3.9444 3.6938 12 6 -1.7708 -4.0034 3.6825 13 7 -2.2034 -5.3969 3.5071 14 6 -3.6672 -5.5053 3.5668 15 6 -4.2786 -4.6489 2.4880 16 1 -3.6440 -4.1450 1.7741 17 6 -5.6482 -4.5089 2.4125 18 7 -6.1819 -3.7619 1.4708 19 14 -6.7457 -5.3801 3.6477 20 1 -6.9693 -4.4970 4.8205 21 1 -8.0496 -5.6993 3.0126 22 1 -6.0908 -6.6367 4.0919 23 6 -1.6851 -5.9519 2.2490 24 6 -0.1558 -5.8927 2.2602 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6053 -0.2617 2.1370 33 1 3.1263 -0.6443 1.2952 34 1 2.0699 -2.6550 0.3003 35 1 0.5489 -2.2724 1.1420 36 1 1.7115 -2.4574 3.3249 37 1 3.2321 -2.8400 2.4824 38 1 1.9970 -4.7013 4.4922 39 1 2.0670 -6.1886 3.5173 40 1 3.4421 -5.0581 3.5163 41 1 0.1388 -4.5276 4.5324 42 1 0.0816 -2.9083 3.7946 43 1 -2.1522 -3.3981 2.8601 44 1 -2.1566 -3.6191 4.6267 45 1 -3.9610 -6.5440 3.4163 46 1 -4.0171 -5.1662 4.5419 47 1 -7.1453 -3.6631 1.4178 48 1 -2.0654 -5.3686 1.4103 49 1 -2.0082 -6.9879 2.1481 50 1 0.2300 -6.2771 1.3159 51 1 0.2259 -6.4982 3.0824 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601314910.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:29 Heat of formation + Delta-G solvation = -18.923365 kcal Electronic energy + Delta-G solvation = -23779.126291 eV Core-core repulsion = 20712.304692 eV Total energy + Delta-G solvation = -3066.821599 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.33555 -37.19313 -35.96612 -33.03366 -32.03757 -30.32460 -30.23922 -27.62688 -27.13142 -26.38098 -24.75843 -23.02142 -22.10638 -21.35164 -20.15922 -19.73875 -18.58662 -16.72180 -16.25196 -15.34912 -14.89473 -14.61532 -14.32878 -14.25587 -14.14340 -13.96642 -13.76958 -13.22321 -13.16021 -12.88365 -12.59315 -12.29209 -12.19436 -11.96004 -11.75267 -11.72507 -11.47200 -11.37299 -11.23418 -11.03940 -10.87006 -10.75569 -10.57715 -10.49989 -10.39393 -10.28212 -10.14941 -10.05828 -9.97585 -9.79461 -9.43534 -8.56592 -7.90092 -7.14689 -6.07368 -4.06737 3.28909 3.36694 3.40758 4.20975 4.41925 4.63949 4.89658 4.94916 4.99205 5.03404 5.16298 5.26110 5.28474 5.37732 5.45284 5.55313 5.59942 5.62029 5.67570 5.70926 5.75669 5.80545 5.85475 5.90612 5.90838 5.93786 5.97603 6.01262 6.04973 6.11431 6.16406 6.23176 6.28296 6.32154 6.35601 6.40423 6.52702 6.61342 6.70813 6.83166 6.92585 6.96946 7.09206 7.44930 7.47338 7.60038 8.10151 8.14745 8.48476 8.96968 9.55699 11.05538 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.014497 B = 0.004560 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.965658 B = 6139.082321 C = 7639.074024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 C -0.147 4.147 4 C -0.114 4.114 5 C -0.115 4.115 6 C -0.110 4.110 7 C 0.080 3.920 8 H 0.077 0.923 9 C -0.186 4.186 10 N -0.524 5.524 11 C 0.055 3.945 12 C 0.063 3.937 13 N -0.537 5.537 14 C 0.155 3.845 15 C -0.549 4.549 16 H 0.077 0.923 17 C 0.072 3.928 18 N -0.899 5.899 19 Si 0.878 3.122 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.265 1.265 23 C 0.063 3.937 24 C 0.059 3.941 25 H 0.049 0.951 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.035 0.965 42 H 0.072 0.928 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.026 0.974 46 H 0.024 0.976 47 H 0.263 0.737 48 H 0.052 0.948 49 H 0.065 0.935 50 H 0.067 0.933 51 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.354 3.281 0.713 18.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.115 4.115 3 C -0.204 4.204 4 C -0.151 4.151 5 C -0.152 4.152 6 C -0.148 4.148 7 C -0.029 4.029 8 H 0.095 0.905 9 C -0.245 4.245 10 N -0.249 5.249 11 C -0.073 4.073 12 C -0.065 4.065 13 N -0.261 5.261 14 C 0.028 3.972 15 C -0.587 4.587 16 H 0.095 0.905 17 C -0.130 4.130 18 N -0.537 5.537 19 Si 0.705 3.295 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.190 1.190 23 C -0.066 4.066 24 C -0.069 4.069 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.053 0.947 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.044 0.956 46 H 0.042 0.958 47 H 0.072 0.928 48 H 0.070 0.930 49 H 0.083 0.917 50 H 0.085 0.915 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 18.170 3.340 0.643 18.486 hybrid contribution -0.778 -0.388 0.575 1.042 sum 17.393 2.952 1.218 17.683 Atomic orbital electron populations 1.21896 0.94770 1.02693 1.01400 1.21111 0.96314 0.95616 0.98432 1.21852 1.00447 0.96554 1.01582 1.21665 0.99897 0.95969 0.97611 1.21564 1.03029 0.93590 0.97017 1.21666 0.99635 0.94393 0.99087 1.21716 0.87941 0.95646 0.97605 0.90521 1.22464 1.00776 1.01096 1.00137 1.62337 1.08339 1.19010 1.35193 1.22281 0.96052 0.98962 0.90008 1.21947 0.92121 0.91080 1.01388 1.62608 1.12854 1.17632 1.32994 1.20140 0.83641 0.96873 0.96556 1.21710 0.92626 1.29886 1.14496 0.90478 1.24964 0.98142 0.94630 0.95290 1.69928 1.11568 1.39047 1.33170 0.86819 0.80145 0.80843 0.81698 1.20260 1.21371 1.18959 1.21945 0.91947 0.99626 0.93094 1.22201 0.96568 0.88409 0.99765 0.93201 0.91673 0.92786 0.91593 0.93127 0.92972 0.92832 0.92254 0.92791 0.92738 0.89934 0.91813 0.92407 0.92297 0.92500 0.92700 0.94714 0.91012 0.92672 0.91716 0.95634 0.95822 0.92761 0.92961 0.91653 0.91467 0.94677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.95 37.16 0.33 -1.46 16 2 C -0.10 -1.00 2.92 -90.62 -0.26 -1.26 16 3 C -0.15 -1.34 9.19 37.16 0.34 -1.00 16 4 C -0.11 -1.18 4.68 -26.73 -0.13 -1.30 16 5 C -0.11 -1.32 4.86 -26.73 -0.13 -1.45 16 6 C -0.11 -1.21 4.51 -26.73 -0.12 -1.33 16 7 C 0.08 0.96 2.35 -67.71 -0.16 0.80 16 8 H 0.08 0.92 8.11 -51.93 -0.42 0.49 16 9 C -0.19 -2.07 8.49 37.15 0.32 -1.75 16 10 N -0.52 -7.86 4.15 -226.49 -0.94 -8.80 16 11 C 0.05 0.86 4.82 -3.77 -0.02 0.85 16 12 C 0.06 1.24 5.24 -3.77 -0.02 1.23 16 13 N -0.54 -11.30 4.92 -235.91 -1.16 -12.46 16 14 C 0.15 3.75 4.21 -4.98 -0.02 3.73 16 15 C -0.55 -15.29 8.21 -34.44 -0.28 -15.57 16 16 H 0.08 2.35 6.07 -52.49 -0.32 2.04 16 17 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 18 N -0.90 -27.44 13.96 55.43 0.77 -26.66 16 19 Si 0.88 21.52 27.37 -169.99 -4.65 16.87 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 22 H -0.27 -6.28 6.69 56.52 0.38 -5.90 16 23 C 0.06 1.22 5.32 -3.77 -0.02 1.20 16 24 C 0.06 0.92 5.25 -3.77 -0.02 0.90 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.87 6.57 -51.93 -0.34 0.53 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.49 8.14 -51.92 -0.42 0.06 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 1.16 6.18 -51.92 -0.32 0.84 16 36 H 0.06 0.73 6.11 -51.93 -0.32 0.42 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.69 6.46 -51.93 -0.34 0.35 16 39 H 0.06 0.66 6.59 -51.93 -0.34 0.32 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.03 0.54 6.46 -51.93 -0.34 0.21 16 42 H 0.07 1.04 6.07 -51.93 -0.32 0.72 16 43 H 0.06 1.25 6.62 -51.93 -0.34 0.91 16 44 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 45 H 0.03 0.63 7.52 -51.93 -0.39 0.24 16 46 H 0.02 0.58 7.29 -51.93 -0.38 0.20 16 47 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 48 H 0.05 1.17 6.78 -51.93 -0.35 0.82 16 49 H 0.07 1.24 8.12 -51.93 -0.42 0.81 16 50 H 0.07 0.96 8.12 -51.93 -0.42 0.54 16 51 H 0.04 0.54 6.60 -51.93 -0.34 0.20 16 LS Contribution 371.44 15.07 5.60 5.60 Total: -1.00 -28.99 371.44 -10.60 -39.59 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -9.93 Total: 0.32 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -0.29 Total: -14.45 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: -1.33 Total: -47.93 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.65 Total: 16.87 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.99 -10.60 -39.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601314910.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.670 kcal (2) G-P(sol) polarization free energy of solvation -28.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds