Wall clock time and date at job start Tue Mar 31 2020 05:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42906 * 113.99957 * 2 1 4 4 C 1.52999 * 109.46469 * 150.00062 * 3 2 1 5 5 C 1.53003 * 109.46943 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47172 * 300.00455 * 5 4 3 7 7 N 1.46902 * 109.47495 * 179.97438 * 6 5 4 8 8 C 1.46947 * 111.00100 * 174.99871 * 7 6 5 9 9 C 1.53050 * 109.36354 * 183.19060 * 8 7 6 10 10 N 1.46964 * 109.36372 * 301.59410 * 9 8 7 11 11 C 1.46895 * 110.99832 * 183.18659 * 10 9 8 12 12 C 1.50702 * 109.46770 * 170.00196 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72214 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 C 1.46961 * 110.87434 * 59.32144 * 10 9 8 21 21 C 1.46957 * 110.99807 * 298.79990 * 7 6 5 22 22 C 1.53004 * 109.47290 * 59.99484 * 6 5 4 23 23 C 1.52993 * 109.47297 * 270.00035 * 3 2 1 24 24 H 1.08996 * 109.47307 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46566 * 299.99779 * 1 2 3 26 26 H 1.08993 * 109.47056 * 59.99511 * 1 2 3 27 27 H 1.09004 * 109.46777 * 30.00428 * 3 2 1 28 28 H 1.09004 * 109.47322 * 60.00700 * 4 3 2 29 29 H 1.08998 * 109.47441 * 299.99824 * 4 3 2 30 30 H 1.08998 * 109.47580 * 180.02562 * 5 4 3 31 31 H 1.09003 * 109.46635 * 59.99637 * 5 4 3 32 32 H 1.09000 * 109.46977 * 299.99861 * 6 5 4 33 33 H 1.08995 * 109.49351 * 63.22366 * 8 7 6 34 34 H 1.08997 * 109.49010 * 303.15477 * 8 7 6 35 35 H 1.09004 * 109.48956 * 181.63242 * 9 8 7 36 36 H 1.09004 * 109.49487 * 61.56311 * 9 8 7 37 37 H 1.09004 * 109.47258 * 50.00519 * 11 10 9 38 38 H 1.08994 * 109.47601 * 290.00111 * 11 10 9 39 39 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 40 40 H 1.09000 * 109.48905 * 60.65158 * 20 10 9 41 41 H 1.09006 * 109.48522 * 180.71003 * 20 10 9 42 42 H 1.09006 * 109.48944 * 296.77650 * 21 7 6 43 43 H 1.09004 * 109.48922 * 56.84213 * 21 7 6 44 44 H 1.09000 * 109.46802 * 60.00270 * 22 6 5 45 45 H 1.08999 * 109.47254 * 179.97438 * 22 6 5 46 46 H 1.09000 * 109.47369 * 300.00394 * 23 3 2 47 47 H 1.09004 * 109.46640 * 59.99914 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.3589 1.2632 0.7213 5 6 3.9811 2.6610 0.7219 6 6 4.1884 3.1276 -0.7204 7 7 4.7851 4.4700 -0.7199 8 6 5.1084 4.9031 -2.0864 9 6 5.7987 6.2682 -2.0361 10 7 4.9140 7.2376 -1.3749 11 6 5.5108 8.5799 -1.3743 12 6 4.4857 9.5851 -0.9162 13 1 3.4906 9.2593 -0.6515 14 6 4.8201 10.9199 -0.8289 15 7 6.0320 11.3165 -1.1509 16 14 3.5518 12.1648 -0.2538 17 1 2.2750 11.4683 0.0458 18 1 4.0446 12.8432 0.9719 19 1 3.3278 13.1726 -1.3212 20 6 4.5906 6.8043 -0.0083 21 6 3.9004 5.4393 -0.0587 22 6 2.8396 3.1699 -1.4417 23 6 2.2177 1.7714 -1.4424 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.3450 1.9994 0.5139 28 1 4.0242 0.5693 0.2073 29 1 3.2112 0.9312 1.7489 30 1 4.9421 2.6308 1.2353 31 1 3.3156 3.3545 1.2360 32 1 4.8537 2.4341 -1.2346 33 1 4.1911 4.9809 -2.6699 34 1 5.7744 4.1757 -2.5504 35 1 6.0135 6.6047 -3.0504 36 1 6.7299 6.1845 -1.4756 37 1 5.8409 8.8312 -2.3823 38 1 6.3648 8.5975 -0.6973 39 1 6.2672 12.2556 -1.0898 40 1 5.5080 6.7267 0.5752 41 1 3.9246 7.5318 0.4557 42 1 2.9692 5.5231 -0.6191 43 1 3.6857 5.1028 0.9556 44 1 2.1743 3.8634 -0.9275 45 1 2.9873 3.5027 -2.4690 46 1 2.8829 1.0776 -1.9563 47 1 1.2568 1.8015 -1.9562 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601315844.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:57 Heat of formation + Delta-G solvation = -46.721922 kcal Electronic energy + Delta-G solvation = -23307.959427 eV Core-core repulsion = 20104.099298 eV Total energy + Delta-G solvation = -3203.860130 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.06236 -38.43633 -36.55304 -34.10469 -32.37411 -31.09157 -30.36303 -29.37913 -27.37734 -26.30077 -24.59807 -23.38478 -22.77657 -21.85628 -21.16864 -20.00435 -18.64100 -16.88749 -16.31770 -16.19903 -15.72438 -15.41736 -14.68952 -14.51572 -14.39052 -14.16174 -14.04229 -13.71531 -13.43653 -13.40694 -12.94761 -12.55936 -12.19164 -12.16377 -12.01120 -11.67182 -11.43181 -11.38769 -11.22821 -11.04045 -10.91219 -10.75857 -10.61727 -10.54521 -10.46109 -10.20899 -10.19305 -9.69608 -9.62602 -9.15144 -8.43471 -8.01226 -7.19903 -6.02146 -4.03395 3.30704 3.38049 3.42621 3.47171 4.09329 4.42748 4.49545 4.57852 4.87633 4.93991 4.96090 4.99394 5.09411 5.13108 5.22766 5.27527 5.31402 5.33554 5.36751 5.40842 5.55885 5.61123 5.67739 5.69528 5.81904 5.84277 5.89643 5.94989 5.99279 6.02453 6.09619 6.16685 6.24436 6.33683 6.48185 6.64071 6.71721 6.97009 7.23047 7.31443 7.38258 7.41838 7.81393 8.10962 8.23208 8.57126 9.04540 9.60800 11.08829 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028279 B = 0.003342 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.897116 B = 8374.992597 C = 8863.237147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.088 3.912 4 C -0.112 4.112 5 C -0.109 4.109 6 C 0.085 3.915 7 N -0.532 5.532 8 C 0.060 3.940 9 C 0.056 3.944 10 N -0.538 5.538 11 C 0.193 3.807 12 C -0.506 4.506 13 H 0.063 0.937 14 C 0.054 3.946 15 N -0.898 5.898 16 Si 0.897 3.103 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.284 1.284 20 C 0.067 3.933 21 C 0.052 3.948 22 C -0.152 4.152 23 C -0.133 4.133 24 H 0.083 0.917 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.041 0.959 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.030 0.970 37 H 0.029 0.971 38 H -0.009 1.009 39 H 0.260 0.740 40 H 0.028 0.972 41 H 0.084 0.916 42 H 0.041 0.959 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.337 -21.085 1.889 22.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.307 6.307 3 C 0.030 3.970 4 C -0.150 4.150 5 C -0.147 4.147 6 C -0.024 4.024 7 N -0.256 5.256 8 C -0.068 4.068 9 C -0.073 4.073 10 N -0.264 5.264 11 C 0.068 3.932 12 C -0.544 4.544 13 H 0.081 0.919 14 C -0.147 4.147 15 N -0.538 5.538 16 Si 0.725 3.275 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.062 4.062 21 C -0.075 4.075 22 C -0.191 4.191 23 C -0.172 4.172 24 H 0.102 0.898 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.048 0.952 37 H 0.047 0.953 38 H 0.009 0.991 39 H 0.070 0.930 40 H 0.046 0.954 41 H 0.103 0.897 42 H 0.059 0.941 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.093 -21.060 1.877 22.302 hybrid contribution -0.832 1.064 0.167 1.361 sum -7.925 -19.996 2.043 21.606 Atomic orbital electron populations 1.22765 0.81357 1.02495 0.99952 1.87896 1.19427 1.28262 1.95108 1.22221 0.95054 0.84025 0.95661 1.21560 0.95053 0.97793 1.00631 1.21574 1.01535 0.95120 0.96492 1.21735 0.93446 0.91342 0.95856 1.62403 1.43616 1.01401 1.18146 1.22162 0.99291 0.96496 0.88900 1.22065 0.94457 0.91337 0.99415 1.62283 1.43998 1.03622 1.16465 1.19699 0.93799 0.82875 0.96817 1.21195 0.98109 0.91358 1.43774 0.91910 1.24998 0.95430 0.98528 0.95726 1.69974 1.18778 1.16052 1.49018 0.86457 0.81564 0.81226 0.78259 1.19695 1.21113 1.21032 1.21992 0.99202 0.93948 0.91009 1.22324 0.94658 0.92294 0.98259 1.22219 0.98470 0.96566 1.01827 1.21949 1.01170 0.97137 0.96925 0.89831 0.94110 0.94136 0.92242 0.91070 0.91259 0.90434 0.91533 0.90213 0.94083 0.91362 0.91151 0.95211 0.95285 0.99093 0.92998 0.95418 0.89740 0.94091 0.91041 0.91363 0.91255 0.91178 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 101.05 1.09 1.33 16 2 O -0.39 -4.06 10.35 -35.23 -0.36 -4.42 16 3 C 0.09 0.86 2.61 -26.74 -0.07 0.79 16 4 C -0.11 -1.05 5.57 -26.73 -0.15 -1.20 16 5 C -0.11 -1.13 5.01 -26.73 -0.13 -1.26 16 6 C 0.09 0.98 2.23 -67.71 -0.15 0.83 16 7 N -0.53 -7.69 4.70 -226.50 -1.06 -8.76 16 8 C 0.06 0.90 5.25 -3.77 -0.02 0.88 16 9 C 0.06 1.04 5.61 -3.76 -0.02 1.02 16 10 N -0.54 -11.78 4.70 -235.90 -1.11 -12.89 16 11 C 0.19 5.10 4.72 -4.98 -0.02 5.08 16 12 C -0.51 -14.25 8.47 -34.44 -0.29 -14.54 16 13 H 0.06 1.75 7.13 -52.49 -0.37 1.38 16 14 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 15 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 16 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 C 0.07 1.33 5.43 -3.77 -0.02 1.31 16 21 C 0.05 0.82 4.81 -3.77 -0.02 0.80 16 22 C -0.15 -1.67 4.50 -26.70 -0.12 -1.79 16 23 C -0.13 -1.30 5.54 -26.71 -0.15 -1.45 16 24 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.04 0.28 8.09 -51.92 -0.42 -0.14 16 26 H 0.04 0.29 7.87 -51.93 -0.41 -0.12 16 27 H 0.06 0.57 7.79 -51.93 -0.40 0.16 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.70 6.36 -51.93 -0.33 0.37 16 32 H 0.08 0.90 8.11 -51.93 -0.42 0.48 16 33 H 0.04 0.63 6.60 -51.93 -0.34 0.29 16 34 H 0.07 0.90 8.12 -51.93 -0.42 0.48 16 35 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.03 0.82 8.03 -51.93 -0.42 0.40 16 38 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 1.78 6.79 -51.93 -0.35 1.43 16 42 H 0.04 0.66 6.46 -51.93 -0.34 0.32 16 43 H 0.07 0.99 6.17 -51.93 -0.32 0.67 16 44 H 0.07 0.81 6.45 -51.93 -0.34 0.47 16 45 H 0.07 0.81 6.59 -51.93 -0.34 0.47 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.06 0.57 7.87 -51.93 -0.41 0.16 16 LS Contribution 349.85 15.07 5.27 5.27 Total: -1.00 -30.11 349.85 -10.29 -40.40 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -8.57 Total: -3.33 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -0.17 Total: -6.77 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: -1.44 Total: -47.79 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -0.36 Total: -4.42 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.11 -10.29 -40.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601315844.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.322 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds