Wall clock time and date at job start Tue Mar 31 2020 05:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.47094 * 2 1 4 4 H 1.09001 * 109.46713 * 305.00024 * 3 2 1 5 5 C 1.52999 * 109.47049 * 64.99637 * 3 2 1 6 6 C 1.52995 * 109.47143 * 185.00137 * 3 2 1 7 7 C 1.53000 * 109.47335 * 174.55825 * 6 3 2 8 8 H 1.09007 * 109.46632 * 54.28232 * 7 6 3 9 9 C 1.52990 * 109.47353 * 294.27968 * 7 6 3 10 10 C 1.52994 * 109.47492 * 177.94524 * 9 7 6 11 11 N 1.46894 * 109.47156 * 174.27492 * 7 6 3 12 12 C 1.46962 * 110.99973 * 54.18947 * 11 7 6 13 13 C 1.53053 * 109.36292 * 176.81003 * 12 11 7 14 14 N 1.46954 * 109.36451 * 58.40351 * 13 12 11 15 15 C 1.46908 * 110.99951 * 176.81038 * 14 13 12 16 16 C 1.50702 * 109.46852 * 58.99698 * 15 14 13 17 17 H 1.07996 * 120.00660 * 5.06421 * 16 15 14 18 18 C 1.37875 * 119.99726 * 185.06320 * 16 15 14 19 19 N 1.31513 * 120.00294 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00026 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46930 * 59.99782 * 20 18 16 22 22 H 1.48501 * 109.47045 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47046 * 299.99890 * 20 18 16 24 24 C 1.46962 * 110.87787 * 300.67296 * 14 13 12 25 25 C 1.46963 * 111.00535 * 290.38769 * 11 7 6 26 26 H 1.08997 * 109.46679 * 59.99901 * 1 2 3 27 27 H 1.08994 * 109.47119 * 300.00159 * 1 2 3 28 28 H 1.08999 * 109.46899 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46679 * 120.00099 * 2 1 3 30 30 H 1.09003 * 109.46907 * 239.99900 * 2 1 3 31 31 H 1.09002 * 109.47194 * 184.62708 * 5 3 2 32 32 H 1.08992 * 109.47370 * 304.63387 * 5 3 2 33 33 H 1.09002 * 109.46590 * 64.63256 * 5 3 2 34 34 H 1.09002 * 109.46755 * 294.56004 * 6 3 2 35 35 H 1.09004 * 109.47363 * 54.55509 * 6 3 2 36 36 H 1.09004 * 109.47323 * 297.94594 * 9 7 6 37 37 H 1.08998 * 109.47291 * 57.94499 * 9 7 6 38 38 H 1.08997 * 109.47891 * 185.06301 * 10 9 7 39 39 H 1.08997 * 109.46953 * 305.06682 * 10 9 7 40 40 H 1.09000 * 109.47564 * 65.06316 * 10 9 7 41 41 H 1.09006 * 109.48775 * 296.77509 * 12 11 7 42 42 H 1.08997 * 109.48991 * 56.84187 * 12 11 7 43 43 H 1.08994 * 109.49175 * 298.42794 * 13 12 11 44 44 H 1.09006 * 109.48464 * 178.36857 * 13 12 11 45 45 H 1.08988 * 109.47164 * 178.99623 * 15 14 13 46 46 H 1.09000 * 109.46828 * 299.00263 * 15 14 13 47 47 H 0.96997 * 120.00799 * 179.97438 * 19 18 16 48 48 H 1.08994 * 109.49090 * 299.35475 * 24 14 13 49 49 H 1.09003 * 109.48445 * 179.29235 * 24 14 13 50 50 H 1.08997 * 109.48669 * 303.15673 * 25 11 7 51 51 H 1.09003 * 109.48669 * 63.19652 * 25 11 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5649 1.4443 -0.1258 7 6 4.0636 2.8843 -0.2622 8 1 3.6854 3.4801 0.5686 9 6 3.5636 3.4743 -1.5822 10 6 4.0193 4.9305 -1.6952 11 7 5.5324 2.8974 -0.2452 12 6 6.0791 1.9936 -1.2670 13 6 7.6062 2.0958 -1.2703 14 7 8.1205 1.7517 0.0626 15 6 9.5894 1.7648 0.0796 16 6 10.0840 3.1332 -0.3128 17 1 9.3803 3.9369 -0.4714 18 6 11.4351 3.3591 -0.4693 19 7 12.2922 2.3806 -0.2758 20 14 12.0484 5.0554 -0.9550 21 1 11.6361 6.0440 0.0735 22 1 13.5298 5.0359 -1.0565 23 1 11.4668 5.4350 -2.2676 24 6 7.5739 2.6556 1.0843 25 6 6.0469 2.5533 1.0878 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.9262 3.1765 1.2733 32 1 0.5556 2.0527 1.4368 33 1 2.1357 1.6377 2.1432 34 1 4.0032 0.9906 0.7631 35 1 3.8575 0.8734 -1.0070 36 1 3.9714 2.9005 -2.4144 37 1 2.4748 3.4312 -1.6102 38 1 3.5886 5.3776 -2.5910 39 1 3.6871 5.4842 -0.8170 40 1 5.1069 4.9671 -1.7578 41 1 5.7837 0.9688 -1.0415 42 1 5.6935 2.2764 -2.2464 43 1 7.9019 3.1141 -1.5225 44 1 8.0152 1.4049 -2.0075 45 1 9.9433 1.5242 1.0819 46 1 9.9675 1.0256 -0.6265 47 1 13.2427 2.5394 -0.3862 48 1 7.8693 3.6803 0.8589 49 1 7.9595 2.3727 2.0638 50 1 5.6378 3.2442 1.8249 51 1 5.7508 1.5351 1.3401 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601315893.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:25 Heat of formation + Delta-G solvation = -19.532039 kcal Electronic energy + Delta-G solvation = -23958.320317 eV Core-core repulsion = 20891.472324 eV Total energy + Delta-G solvation = -3066.847993 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.59955 -37.32548 -35.42478 -33.04986 -31.87345 -30.72091 -30.20488 -28.28828 -27.02590 -25.39088 -24.17411 -23.16991 -22.72759 -21.70009 -20.50928 -19.71962 -18.39127 -16.32796 -16.13784 -15.44841 -14.99609 -14.69346 -14.50116 -14.29663 -14.11847 -13.88553 -13.64780 -13.51258 -12.98116 -12.82178 -12.71486 -12.42996 -12.14975 -11.88439 -11.79720 -11.76342 -11.52714 -11.26061 -11.08709 -10.96468 -10.89041 -10.79174 -10.65747 -10.60762 -10.50014 -10.35003 -10.23103 -10.12491 -9.88270 -9.76875 -9.45212 -8.39523 -7.85835 -7.10755 -5.98826 -4.07716 3.31630 3.36087 3.39242 4.21320 4.44056 4.57489 4.68722 4.79682 4.96295 5.11118 5.17050 5.22508 5.26146 5.31399 5.38031 5.40285 5.48373 5.50744 5.64184 5.68272 5.73306 5.76345 5.80092 5.82593 5.88853 5.90377 5.94358 5.96987 6.05575 6.07694 6.11342 6.14045 6.22461 6.25452 6.31515 6.41467 6.46291 6.54650 6.71120 6.84267 6.95185 7.28212 7.47552 7.51754 7.56349 7.94137 8.11289 8.34456 8.34965 9.03150 9.58949 11.06108 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.027955 B = 0.003693 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.373195 B = 7580.664134 C = 8038.788702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.089 4.089 4 H 0.071 0.929 5 C -0.150 4.150 6 C -0.147 4.147 7 C 0.084 3.916 8 H 0.079 0.921 9 C -0.114 4.114 10 C -0.142 4.142 11 N -0.526 5.526 12 C 0.055 3.945 13 C 0.066 3.934 14 N -0.543 5.543 15 C 0.188 3.812 16 C -0.547 4.547 17 H 0.058 0.942 18 C 0.064 3.936 19 N -0.893 5.893 20 Si 0.889 3.111 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.064 3.936 25 C 0.059 3.941 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.041 0.959 39 H 0.047 0.953 40 H 0.067 0.933 41 H 0.036 0.964 42 H 0.068 0.932 43 H 0.048 0.952 44 H 0.065 0.935 45 H 0.026 0.974 46 H 0.033 0.967 47 H 0.262 0.738 48 H 0.046 0.954 49 H 0.065 0.935 50 H 0.065 0.935 51 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.020 -1.182 0.062 22.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.108 4.108 4 H 0.090 0.910 5 C -0.207 4.207 6 C -0.186 4.186 7 C -0.025 4.025 8 H 0.097 0.903 9 C -0.152 4.152 10 C -0.199 4.199 11 N -0.250 5.250 12 C -0.073 4.073 13 C -0.063 4.063 14 N -0.268 5.268 15 C 0.062 3.938 16 C -0.586 4.586 17 H 0.076 0.924 18 C -0.138 4.138 19 N -0.532 5.532 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.065 4.065 25 C -0.069 4.069 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.054 0.946 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.083 0.917 45 H 0.044 0.956 46 H 0.051 0.949 47 H 0.072 0.928 48 H 0.064 0.936 49 H 0.083 0.917 50 H 0.083 0.917 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -21.792 -1.227 0.068 21.827 hybrid contribution 0.561 0.904 -0.249 1.092 sum -21.231 -0.324 -0.181 21.234 Atomic orbital electron populations 1.21828 0.96172 1.01297 1.01741 1.21581 0.95574 0.96730 1.01909 1.21170 0.95491 0.95802 0.98353 0.91047 1.21929 1.00909 1.00581 0.97252 1.22336 0.95099 0.98888 1.02304 1.21809 0.87975 0.94457 0.98263 0.90332 1.21604 0.99547 0.96999 0.97062 1.21628 1.02762 0.95382 1.00150 1.62352 1.05427 1.51907 1.05284 1.22276 0.96045 0.94159 0.94791 1.21908 0.91556 1.00526 0.92335 1.62683 1.11299 1.49311 1.03465 1.19716 0.80588 0.96043 0.97465 1.21742 0.92214 0.97201 1.47450 0.92351 1.24962 0.96961 0.96695 0.95190 1.69933 1.02310 1.31613 1.49321 0.86707 0.77576 0.84884 0.79158 1.20278 1.21287 1.20257 1.21916 0.91588 0.96790 0.96176 1.22202 0.96303 0.98538 0.89854 0.92913 0.92574 0.93084 0.92176 0.92171 0.92540 0.92777 0.92857 0.91740 0.91688 0.92059 0.92151 0.93952 0.93395 0.91353 0.94590 0.91338 0.93405 0.91682 0.95621 0.94884 0.92821 0.93611 0.91686 0.91675 0.94696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.67 37.16 0.36 -0.78 16 2 C -0.12 -1.04 5.40 -26.73 -0.14 -1.18 16 3 C -0.09 -0.81 2.27 -90.62 -0.21 -1.01 16 4 H 0.07 0.64 6.32 -51.93 -0.33 0.31 16 5 C -0.15 -1.29 8.71 37.16 0.32 -0.97 16 6 C -0.15 -1.62 3.29 -26.73 -0.09 -1.71 16 7 C 0.08 1.00 1.69 -67.72 -0.11 0.88 16 8 H 0.08 0.94 6.32 -51.93 -0.33 0.61 16 9 C -0.11 -1.26 5.10 -26.74 -0.14 -1.40 16 10 C -0.14 -1.66 9.71 37.15 0.36 -1.30 16 11 N -0.53 -7.91 4.08 -226.49 -0.92 -8.83 16 12 C 0.06 0.88 4.76 -3.76 -0.02 0.86 16 13 C 0.07 1.31 5.24 -3.77 -0.02 1.29 16 14 N -0.54 -11.85 4.92 -235.91 -1.16 -13.01 16 15 C 0.19 4.90 5.14 -4.97 -0.03 4.87 16 16 C -0.55 -15.20 7.66 -34.44 -0.26 -15.46 16 17 H 0.06 1.63 5.82 -52.49 -0.31 1.32 16 18 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 19 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 20 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.06 1.27 5.32 -3.77 -0.02 1.25 16 25 C 0.06 0.94 5.34 -3.77 -0.02 0.92 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.40 6.47 -51.93 -0.34 0.06 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.49 6.68 -51.93 -0.35 0.15 16 32 H 0.05 0.42 6.36 -51.93 -0.33 0.09 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.79 6.52 -51.93 -0.34 0.45 16 35 H 0.06 0.77 6.75 -51.93 -0.35 0.41 16 36 H 0.06 0.71 6.39 -51.93 -0.33 0.38 16 37 H 0.06 0.58 6.39 -51.93 -0.33 0.25 16 38 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.95 7.82 -51.93 -0.41 0.55 16 41 H 0.04 0.58 6.55 -51.93 -0.34 0.24 16 42 H 0.07 1.00 6.29 -51.93 -0.33 0.68 16 43 H 0.05 1.07 6.62 -51.93 -0.34 0.72 16 44 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.03 0.71 8.12 -51.94 -0.42 0.29 16 46 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 48 H 0.05 1.01 6.78 -51.93 -0.35 0.66 16 49 H 0.06 1.28 8.12 -51.93 -0.42 0.86 16 50 H 0.06 0.94 8.07 -51.93 -0.42 0.52 16 51 H 0.03 0.55 6.63 -51.93 -0.34 0.21 16 LS Contribution 368.47 15.07 5.55 5.55 Total: -1.00 -28.45 368.47 -10.57 -39.01 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -9.64 Total: -1.64 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -0.11 Total: -12.00 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -1.35 Total: -47.64 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.45 -10.57 -39.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601315893.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.481 kcal (2) G-P(sol) polarization free energy of solvation -28.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds