Wall clock time and date at job start Tue Mar 31 2020 05:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46857 * 2 1 4 4 H 1.09004 * 109.47383 * 304.99912 * 3 2 1 5 5 C 1.52992 * 109.47221 * 65.00710 * 3 2 1 6 6 C 1.53002 * 109.46842 * 185.00636 * 3 2 1 7 7 C 1.53001 * 109.47253 * 175.00376 * 6 3 2 8 8 H 1.08998 * 109.47032 * 54.99241 * 7 6 3 9 9 C 1.52995 * 109.47337 * 174.99792 * 7 6 3 10 10 C 1.52994 * 109.47084 * 295.92636 * 9 7 6 11 11 N 1.46905 * 109.46759 * 294.99736 * 7 6 3 12 12 C 1.46954 * 110.99982 * 293.73907 * 11 7 6 13 13 C 1.53051 * 109.36725 * 176.80903 * 12 11 7 14 14 N 1.46964 * 109.36127 * 58.40295 * 13 12 11 15 15 C 1.46896 * 110.99929 * 176.81135 * 14 13 12 16 16 C 1.50706 * 109.47089 * 58.40975 * 15 14 13 17 17 H 1.07993 * 119.99817 * 5.36699 * 16 15 14 18 18 C 1.37873 * 120.00027 * 185.36894 * 16 15 14 19 19 N 1.31516 * 120.00051 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00243 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47188 * 59.99572 * 20 18 16 22 22 H 1.48493 * 109.47220 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47084 * 299.99927 * 20 18 16 24 24 C 1.46954 * 110.87923 * 300.68004 * 14 13 12 25 25 C 1.46951 * 110.99882 * 169.93981 * 11 7 6 26 26 H 1.09003 * 109.47203 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46692 * 299.99365 * 1 2 3 28 28 H 1.08997 * 109.47559 * 59.99448 * 1 2 3 29 29 H 1.09006 * 109.46692 * 240.00635 * 2 1 3 30 30 H 1.08997 * 109.47559 * 120.00552 * 2 1 3 31 31 H 1.09004 * 109.47594 * 59.99331 * 5 3 2 32 32 H 1.08994 * 109.47231 * 179.97438 * 5 3 2 33 33 H 1.09006 * 109.47138 * 299.99898 * 5 3 2 34 34 H 1.08998 * 109.47549 * 54.99542 * 6 3 2 35 35 H 1.09008 * 109.46926 * 295.00019 * 6 3 2 36 36 H 1.08998 * 109.47267 * 55.92490 * 9 7 6 37 37 H 1.09000 * 109.47004 * 175.92496 * 9 7 6 38 38 H 1.09000 * 109.46784 * 306.03928 * 10 9 7 39 39 H 1.08991 * 109.47707 * 66.04122 * 10 9 7 40 40 H 1.09001 * 109.47318 * 186.04844 * 10 9 7 41 41 H 1.09000 * 109.49255 * 296.77944 * 12 11 7 42 42 H 1.09008 * 109.48966 * 56.84836 * 12 11 7 43 43 H 1.09001 * 109.48939 * 298.43696 * 13 12 11 44 44 H 1.08999 * 109.49178 * 178.36705 * 13 12 11 45 45 H 1.09003 * 109.46714 * 178.40552 * 15 14 13 46 46 H 1.08994 * 109.47384 * 298.40587 * 15 14 13 47 47 H 0.96995 * 120.00216 * 179.97438 * 19 18 16 48 48 H 1.09000 * 109.49255 * 299.35309 * 24 14 13 49 49 H 1.09001 * 109.49150 * 179.28735 * 24 14 13 50 50 H 1.08998 * 109.49255 * 303.15761 * 25 11 7 51 51 H 1.09004 * 109.48759 * 63.20210 * 25 11 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5648 1.4444 -0.1259 7 6 4.0645 2.8850 -0.2512 8 1 3.6971 3.4716 0.5909 9 6 5.5944 2.8960 -0.2516 10 6 6.1084 2.3840 1.0953 11 7 3.5702 3.4673 -1.5061 12 6 4.1642 2.7934 -2.6692 13 6 3.5655 3.3738 -3.9526 14 7 3.8207 4.8204 -3.9985 15 6 3.3265 5.4026 -5.2534 16 6 1.8489 5.1361 -5.3831 17 1 1.3118 4.6660 -4.5727 18 6 1.1828 5.4924 -6.5365 19 7 1.8368 6.0652 -7.5233 20 14 -0.6488 5.1628 -6.6972 21 1 -1.3778 5.8854 -5.6241 22 1 -1.1224 5.6353 -8.0229 23 1 -0.9022 3.7048 -6.5724 24 6 3.2267 5.4942 -2.8354 25 6 3.8254 4.9137 -1.5520 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.0700 1.5874 2.1492 32 1 1.9990 3.1540 1.3075 33 1 0.5490 2.1252 1.3970 34 1 3.8570 0.8801 -1.0114 35 1 4.0030 0.9836 0.7595 36 1 5.9621 2.2512 -1.0498 37 1 5.9504 3.9135 -0.4134 38 1 5.6555 2.9623 1.9006 39 1 5.8437 1.3329 1.2096 40 1 7.1923 2.4922 1.1356 41 1 5.2430 2.9496 -2.6682 42 1 3.9509 1.7256 -2.6190 43 1 2.4905 3.1936 -3.9662 44 1 4.0257 2.8958 -4.8172 45 1 3.5027 6.4782 -5.2490 46 1 3.8523 4.9517 -6.0949 47 1 1.3683 6.3156 -8.3349 48 1 2.1479 5.3381 -2.8364 49 1 3.4399 6.5620 -2.8856 50 1 3.3652 5.3918 -0.6873 51 1 4.9004 5.0939 -1.5380 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601315895.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:30 Heat of formation + Delta-G solvation = -19.401446 kcal Electronic energy + Delta-G solvation = -24189.067703 eV Core-core repulsion = 21122.225373 eV Total energy + Delta-G solvation = -3066.842330 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.54634 -37.17960 -35.44084 -33.13153 -31.91031 -30.58103 -30.22801 -28.15244 -26.96225 -25.38276 -24.02907 -23.17317 -22.93553 -21.71092 -20.18647 -19.65805 -18.43370 -16.29936 -16.04582 -15.29341 -15.11700 -14.72108 -14.46645 -14.31056 -14.10597 -13.90629 -13.63312 -13.19316 -13.16045 -12.89837 -12.40183 -12.28480 -12.04922 -11.97228 -11.82365 -11.68022 -11.48568 -11.40645 -11.05227 -10.98988 -10.87436 -10.80473 -10.57546 -10.41488 -10.40397 -10.31292 -10.22564 -10.06272 -9.83900 -9.77314 -9.45307 -8.39337 -7.85953 -7.10498 -5.98670 -4.07460 3.31597 3.36160 3.39240 4.22775 4.44174 4.64883 4.89387 4.97163 5.06941 5.10209 5.12679 5.26832 5.31021 5.31668 5.46222 5.51200 5.56192 5.61192 5.64344 5.69210 5.71559 5.81747 5.89212 5.90480 5.92267 6.00127 6.00423 6.01420 6.08128 6.11165 6.12037 6.16797 6.22640 6.25648 6.39575 6.40818 6.53583 6.63928 6.72655 6.84218 6.95348 7.28208 7.47295 7.51636 7.56538 7.94290 8.11365 8.34717 8.35094 9.03319 9.59179 11.06283 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.015379 B = 0.004942 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.180471 B = 5664.254880 C = 6943.610969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.088 4.088 4 H 0.087 0.913 5 C -0.144 4.144 6 C -0.105 4.105 7 C 0.083 3.917 8 H 0.079 0.921 9 C -0.158 4.158 10 C -0.146 4.146 11 N -0.525 5.525 12 C 0.055 3.945 13 C 0.066 3.934 14 N -0.543 5.543 15 C 0.187 3.813 16 C -0.546 4.546 17 H 0.058 0.942 18 C 0.065 3.935 19 N -0.893 5.893 20 Si 0.888 3.112 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.064 3.936 25 C 0.059 3.941 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.049 0.951 41 H 0.036 0.964 42 H 0.069 0.931 43 H 0.048 0.952 44 H 0.065 0.935 45 H 0.025 0.975 46 H 0.033 0.967 47 H 0.262 0.738 48 H 0.046 0.954 49 H 0.065 0.935 50 H 0.065 0.935 51 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.953 -9.548 17.512 20.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.106 4.106 4 H 0.106 0.894 5 C -0.201 4.201 6 C -0.142 4.142 7 C -0.026 4.026 8 H 0.097 0.903 9 C -0.197 4.197 10 C -0.204 4.204 11 N -0.249 5.249 12 C -0.073 4.073 13 C -0.063 4.063 14 N -0.267 5.267 15 C 0.061 3.939 16 C -0.585 4.585 17 H 0.076 0.924 18 C -0.138 4.138 19 N -0.532 5.532 20 Si 0.716 3.284 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.065 4.065 25 C -0.069 4.069 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.054 0.946 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.083 0.917 45 H 0.044 0.956 46 H 0.051 0.949 47 H 0.072 0.928 48 H 0.064 0.936 49 H 0.083 0.917 50 H 0.083 0.917 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 3.924 -9.457 17.306 20.108 hybrid contribution -1.055 -0.095 -0.272 1.094 sum 2.869 -9.552 17.033 19.738 Atomic orbital electron populations 1.21814 0.96195 1.01018 1.02031 1.21573 0.95743 0.97033 1.01244 1.21088 0.95192 0.95318 0.99045 0.89426 1.21872 1.00851 1.00493 0.96927 1.21714 0.95611 0.95587 1.01328 1.21827 0.91607 0.96031 0.93091 0.90283 1.22217 0.97856 1.01677 0.97998 1.21741 1.00398 1.01062 0.97219 1.62331 1.57826 1.03385 1.01328 1.22282 0.96773 0.97651 0.90582 1.21907 0.99715 0.89881 0.94793 1.62678 1.57568 1.02478 1.04010 1.19721 0.93331 0.94980 0.85826 1.21731 0.95233 1.40256 1.01301 0.92370 1.24955 0.98079 0.94960 0.95774 1.69936 1.36107 1.41246 1.05884 0.86715 0.85816 0.78680 0.77163 1.20287 1.21285 1.20271 1.21917 0.97917 0.97388 0.89244 1.22206 0.98625 0.87738 0.98364 0.93370 0.92736 0.92535 0.92324 0.92765 0.93616 0.92610 0.92992 0.91948 0.92055 0.91661 0.91897 0.92952 0.92646 0.93225 0.94609 0.91320 0.93371 0.91696 0.95648 0.94856 0.92834 0.93620 0.91704 0.91675 0.94730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.67 37.16 0.36 -1.19 16 2 C -0.12 -1.21 5.40 -26.73 -0.14 -1.36 16 3 C -0.09 -0.99 2.33 -90.62 -0.21 -1.20 16 4 H 0.09 1.23 7.62 -51.93 -0.40 0.83 16 5 C -0.14 -1.49 8.71 37.15 0.32 -1.16 16 6 C -0.10 -1.14 3.93 -26.73 -0.11 -1.24 16 7 C 0.08 0.99 1.65 -67.71 -0.11 0.87 16 8 H 0.08 0.94 6.23 -51.93 -0.32 0.61 16 9 C -0.16 -1.77 4.58 -26.74 -0.12 -1.89 16 10 C -0.15 -1.34 9.50 37.15 0.35 -0.99 16 11 N -0.53 -7.78 4.03 -226.48 -0.91 -8.69 16 12 C 0.06 0.87 4.75 -3.77 -0.02 0.85 16 13 C 0.07 1.31 5.23 -3.76 -0.02 1.29 16 14 N -0.54 -11.78 4.92 -235.90 -1.16 -12.94 16 15 C 0.19 4.87 5.15 -4.97 -0.03 4.85 16 16 C -0.55 -15.11 7.66 -34.44 -0.26 -15.37 16 17 H 0.06 1.61 5.83 -52.49 -0.31 1.31 16 18 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 19 N -0.89 -26.47 13.29 55.43 0.74 -25.74 16 20 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.06 1.26 5.32 -3.76 -0.02 1.24 16 25 C 0.06 0.93 5.34 -3.77 -0.02 0.91 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.52 6.57 -51.93 -0.34 0.18 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.60 6.46 -51.93 -0.34 0.27 16 33 H 0.05 0.53 6.57 -51.93 -0.34 0.19 16 34 H 0.06 0.72 6.28 -51.93 -0.33 0.39 16 35 H 0.06 0.60 6.44 -51.92 -0.33 0.26 16 36 H 0.06 0.77 6.65 -51.93 -0.35 0.43 16 37 H 0.06 0.77 6.60 -51.93 -0.34 0.43 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.05 0.48 6.73 -51.93 -0.35 0.13 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.04 0.57 6.50 -51.93 -0.34 0.23 16 42 H 0.07 1.00 6.25 -51.92 -0.32 0.67 16 43 H 0.05 1.07 6.59 -51.93 -0.34 0.73 16 44 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.03 0.70 8.11 -51.93 -0.42 0.28 16 46 H 0.03 0.94 8.14 -51.93 -0.42 0.51 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 48 H 0.05 1.00 6.81 -51.93 -0.35 0.65 16 49 H 0.06 1.27 8.12 -51.93 -0.42 0.85 16 50 H 0.06 0.93 8.07 -51.93 -0.42 0.51 16 51 H 0.03 0.55 6.68 -51.93 -0.35 0.20 16 LS Contribution 368.45 15.07 5.55 5.55 Total: -1.00 -28.24 368.45 -10.58 -38.81 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -9.65 Total: -1.01 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -0.12 Total: -12.65 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: -1.34 Total: -47.38 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.24 -10.58 -38.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601315895.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.411 kcal (2) G-P(sol) polarization free energy of solvation -28.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds