Wall clock time and date at job start Tue Mar 31 2020 05:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47198 * 2 1 4 4 H 1.09001 * 109.47312 * 54.30939 * 3 2 1 5 5 C 1.53002 * 109.46583 * 294.30982 * 3 2 1 6 6 C 1.53005 * 109.46862 * 175.85556 * 5 3 2 7 7 H 1.08990 * 109.47154 * 54.31878 * 6 5 3 8 8 C 1.53005 * 109.47085 * 174.32123 * 6 5 3 9 9 C 1.53003 * 109.47042 * 294.32028 * 6 5 3 10 10 C 1.52995 * 109.46829 * 175.00197 * 9 6 5 11 11 N 1.46896 * 109.47105 * 174.31664 * 3 2 1 12 12 C 1.46952 * 111.00494 * 53.70839 * 11 3 2 13 13 C 1.53047 * 109.36634 * 176.81313 * 12 11 3 14 14 N 1.46956 * 109.36672 * 58.40341 * 13 12 11 15 15 C 1.46896 * 111.00119 * 176.81349 * 14 13 12 16 16 C 1.50697 * 109.47391 * 59.00622 * 15 14 13 17 17 H 1.08003 * 120.00088 * 5.05668 * 16 15 14 18 18 C 1.37876 * 120.00314 * 185.05685 * 16 15 14 19 19 N 1.31516 * 119.99792 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00202 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47167 * 60.00161 * 20 18 16 22 22 H 1.48507 * 109.47164 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47123 * 299.99861 * 20 18 16 24 24 C 1.46961 * 110.87684 * 300.67935 * 14 13 12 25 25 C 1.46960 * 110.99868 * 289.90698 * 11 3 2 26 26 H 1.09005 * 109.46958 * 305.70094 * 1 2 3 27 27 H 1.09000 * 109.47373 * 65.69925 * 1 2 3 28 28 H 1.08999 * 109.47406 * 185.70709 * 1 2 3 29 29 H 1.08993 * 109.46845 * 239.99178 * 2 1 3 30 30 H 1.09002 * 109.46942 * 119.99435 * 2 1 3 31 31 H 1.09000 * 109.47057 * 55.86170 * 5 3 2 32 32 H 1.09000 * 109.47488 * 295.85727 * 5 3 2 33 33 H 1.08993 * 109.46877 * 185.60898 * 8 6 5 34 34 H 1.08997 * 109.46872 * 305.61401 * 8 6 5 35 35 H 1.09002 * 109.47011 * 65.60728 * 8 6 5 36 36 H 1.08994 * 109.47336 * 54.99893 * 9 6 5 37 37 H 1.09005 * 109.47255 * 294.99675 * 9 6 5 38 38 H 1.09007 * 109.47391 * 60.00143 * 10 9 6 39 39 H 1.09005 * 109.47517 * 299.99774 * 10 9 6 40 40 H 1.09008 * 109.47107 * 180.02562 * 10 9 6 41 41 H 1.09006 * 109.48883 * 296.78232 * 12 11 3 42 42 H 1.08998 * 109.48778 * 56.84364 * 12 11 3 43 43 H 1.09000 * 109.48719 * 298.43517 * 13 12 11 44 44 H 1.08998 * 109.48903 * 178.37089 * 13 12 11 45 45 H 1.09006 * 109.47228 * 179.00601 * 15 14 13 46 46 H 1.08995 * 109.47201 * 299.00094 * 15 14 13 47 47 H 0.97004 * 120.00327 * 179.97438 * 19 18 16 48 48 H 1.09006 * 109.48983 * 299.35065 * 24 14 13 49 49 H 1.08998 * 109.48807 * 179.28855 * 24 14 13 50 50 H 1.08998 * 109.49132 * 303.16015 * 25 11 3 51 51 H 1.09000 * 109.48755 * 63.19715 * 25 11 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5959 1.9849 0.8346 5 6 1.6501 2.1212 -1.3147 6 6 2.0688 3.5922 -1.2729 7 1 3.1303 3.6612 -1.0354 8 6 1.8084 4.2355 -2.6366 9 6 1.2578 4.3231 -0.2010 10 6 1.7620 5.7619 -0.0728 11 7 3.5025 1.4447 0.1372 12 6 4.1290 0.5975 -0.8872 13 6 5.6514 0.6895 -0.7603 14 7 6.0546 0.2659 0.5879 15 6 7.5171 0.2682 0.7251 16 6 8.0449 1.6535 0.4543 17 1 7.3580 2.4697 0.2857 18 6 9.4047 1.8790 0.4217 19 7 10.2412 0.8850 0.6265 20 14 10.0589 3.5960 0.0852 21 1 9.5658 4.5274 1.1314 22 1 11.5437 3.5723 0.1029 23 1 9.5875 4.0532 -1.2466 24 6 5.4281 1.1132 1.6123 25 6 3.9057 1.0212 1.4854 26 1 -0.3633 0.5997 0.8346 27 1 -0.3634 0.4229 -0.9366 28 1 -0.3634 -1.0225 0.1022 29 1 1.8932 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 0.5708 2.0544 -1.4518 32 1 2.1532 1.6235 -2.1437 33 1 2.1975 5.2536 -2.6382 34 1 2.3063 3.6549 -3.4131 35 1 0.7358 4.2560 -2.8297 36 1 1.3734 3.8111 0.7542 37 1 0.2052 4.3309 -0.4841 38 1 1.6464 6.2740 -1.0281 39 1 2.8147 5.7542 0.2102 40 1 1.1846 6.2826 0.6912 41 1 3.8141 -0.4365 -0.7462 42 1 3.8252 0.9387 -1.8768 43 1 5.9687 1.7186 -0.9283 44 1 6.1179 0.0394 -1.5004 45 1 7.7876 -0.0322 1.7375 46 1 7.9502 -0.4318 0.0106 47 1 11.1979 1.0435 0.6032 48 1 5.7430 2.1472 1.4713 49 1 5.7319 0.7720 2.6019 50 1 3.4392 1.6713 2.2255 51 1 3.5879 -0.0078 1.6536 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601315896.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:32 Heat of formation + Delta-G solvation = -19.615096 kcal Electronic energy + Delta-G solvation = -24247.568222 eV Core-core repulsion = 21180.716627 eV Total energy + Delta-G solvation = -3066.851595 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.55555 -37.18745 -35.38514 -33.11042 -31.90813 -30.59229 -30.09515 -28.54592 -26.96203 -25.04223 -23.95032 -23.32796 -22.76744 -21.78523 -20.41575 -19.59231 -18.43996 -16.29554 -15.99732 -15.28432 -15.11393 -14.73413 -14.38228 -14.09779 -14.03335 -13.94746 -13.64840 -13.56993 -13.14803 -12.82843 -12.30582 -12.26392 -12.05896 -12.00937 -11.83077 -11.61670 -11.53283 -11.35631 -11.07295 -11.02900 -10.92832 -10.82311 -10.57309 -10.42683 -10.40328 -10.26113 -10.17648 -10.07771 -9.83053 -9.77430 -9.45326 -8.39313 -7.85829 -7.10520 -5.98690 -4.07460 3.31595 3.36124 3.39219 4.22691 4.44157 4.70115 4.87170 4.92220 5.08149 5.12689 5.13441 5.23653 5.31557 5.35671 5.45567 5.54327 5.56767 5.58680 5.69033 5.70028 5.71575 5.82778 5.85111 5.90071 5.91858 5.97587 6.01264 6.02377 6.07857 6.11219 6.15340 6.18945 6.21705 6.31358 6.33642 6.44976 6.51517 6.64763 6.72973 6.84319 6.95233 7.28247 7.47323 7.51666 7.56450 7.94249 8.11413 8.34598 8.35119 9.03299 9.59167 11.06252 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.016110 B = 0.004879 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.599986 B = 5737.289227 C = 6810.744525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.158 4.158 3 C 0.083 3.917 4 H 0.079 0.921 5 C -0.105 4.105 6 C -0.088 4.088 7 H 0.088 0.912 8 C -0.147 4.147 9 C -0.115 4.115 10 C -0.153 4.153 11 N -0.525 5.525 12 C 0.055 3.945 13 C 0.066 3.934 14 N -0.543 5.543 15 C 0.187 3.813 16 C -0.546 4.546 17 H 0.058 0.942 18 C 0.065 3.935 19 N -0.893 5.893 20 Si 0.888 3.112 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.064 3.936 25 C 0.059 3.941 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.046 0.954 36 H 0.062 0.938 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.046 0.954 41 H 0.036 0.964 42 H 0.068 0.932 43 H 0.048 0.952 44 H 0.065 0.935 45 H 0.026 0.974 46 H 0.033 0.967 47 H 0.262 0.738 48 H 0.046 0.954 49 H 0.065 0.935 50 H 0.065 0.935 51 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.942 2.893 -2.729 20.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.197 4.197 3 C -0.026 4.026 4 H 0.097 0.903 5 C -0.142 4.142 6 C -0.107 4.107 7 H 0.106 0.894 8 C -0.204 4.204 9 C -0.152 4.152 10 C -0.210 4.210 11 N -0.248 5.248 12 C -0.073 4.073 13 C -0.063 4.063 14 N -0.267 5.267 15 C 0.062 3.938 16 C -0.585 4.585 17 H 0.076 0.924 18 C -0.138 4.138 19 N -0.532 5.532 20 Si 0.716 3.284 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.065 4.065 25 C -0.069 4.069 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.083 0.917 45 H 0.044 0.956 46 H 0.051 0.949 47 H 0.072 0.928 48 H 0.064 0.936 49 H 0.083 0.917 50 H 0.083 0.917 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -19.720 2.845 -2.714 20.108 hybrid contribution 0.563 0.925 -0.159 1.095 sum -19.157 3.770 -2.873 19.735 Atomic orbital electron populations 1.21741 0.95894 1.01182 1.01604 1.22219 0.96125 0.99009 1.02379 1.21831 0.88282 0.93952 0.98507 0.90295 1.21709 1.00082 0.95495 0.96930 1.21094 1.01741 0.93646 0.94207 0.89366 1.21877 1.00726 1.00576 0.97227 1.21570 0.98718 0.95640 0.99322 1.21806 1.01477 0.96683 1.01036 1.62329 1.06062 1.52802 1.03646 1.22275 0.95545 0.94728 0.94720 1.21905 0.92022 1.00203 0.92179 1.62678 1.11946 1.50238 1.01871 1.19718 0.80696 0.95998 0.97434 1.21732 0.91884 0.95719 1.49189 0.92371 1.24956 0.97065 0.96694 0.95056 1.69938 1.02657 1.31011 1.49565 0.86716 0.77697 0.85069 0.78893 1.20285 1.21285 1.20273 1.21915 0.91272 0.97290 0.95978 1.22205 0.96911 0.98100 0.89715 0.92952 0.92666 0.93217 0.91698 0.91867 0.92087 0.91929 0.92862 0.93019 0.93454 0.91923 0.92971 0.92940 0.92482 0.93445 0.94621 0.91330 0.93391 0.91705 0.95627 0.94889 0.92835 0.93597 0.91705 0.91674 0.94733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.54 37.16 0.35 -0.99 16 2 C -0.16 -1.77 4.53 -26.73 -0.12 -1.89 16 3 C 0.08 0.98 1.64 -67.71 -0.11 0.87 16 4 H 0.08 0.93 6.19 -51.93 -0.32 0.61 16 5 C -0.10 -1.13 3.92 -26.73 -0.10 -1.24 16 6 C -0.09 -0.99 2.33 -90.61 -0.21 -1.21 16 7 H 0.09 1.24 7.57 -51.93 -0.39 0.85 16 8 C -0.15 -1.50 8.81 37.16 0.33 -1.17 16 9 C -0.12 -1.19 5.28 -26.73 -0.14 -1.33 16 10 C -0.15 -1.57 9.67 37.15 0.36 -1.21 16 11 N -0.52 -7.75 3.98 -226.49 -0.90 -8.65 16 12 C 0.06 0.87 4.75 -3.77 -0.02 0.86 16 13 C 0.07 1.31 5.24 -3.77 -0.02 1.29 16 14 N -0.54 -11.77 4.92 -235.91 -1.16 -12.93 16 15 C 0.19 4.87 5.14 -4.98 -0.03 4.85 16 16 C -0.55 -15.10 7.66 -34.44 -0.26 -15.37 16 17 H 0.06 1.61 5.82 -52.48 -0.31 1.31 16 18 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 19 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 20 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 24 C 0.06 1.27 5.32 -3.77 -0.02 1.25 16 25 C 0.06 0.93 5.34 -3.77 -0.02 0.91 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.47 6.78 -51.93 -0.35 0.12 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.77 6.75 -51.93 -0.35 0.42 16 30 H 0.06 0.78 6.54 -51.93 -0.34 0.44 16 31 H 0.06 0.59 6.53 -51.93 -0.34 0.25 16 32 H 0.06 0.72 6.32 -51.93 -0.33 0.39 16 33 H 0.05 0.54 6.85 -51.93 -0.36 0.18 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.68 6.29 -51.93 -0.33 0.36 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.05 0.51 6.69 -51.93 -0.35 0.16 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 41 H 0.04 0.57 6.54 -51.93 -0.34 0.23 16 42 H 0.07 1.00 6.26 -51.93 -0.33 0.67 16 43 H 0.05 1.06 6.62 -51.93 -0.34 0.72 16 44 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.03 0.71 8.12 -51.93 -0.42 0.29 16 46 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 48 H 0.05 1.00 6.78 -51.93 -0.35 0.65 16 49 H 0.06 1.27 8.12 -51.93 -0.42 0.85 16 50 H 0.06 0.93 8.07 -51.93 -0.42 0.51 16 51 H 0.03 0.55 6.65 -51.93 -0.35 0.20 16 LS Contribution 368.74 15.07 5.56 5.56 Total: -1.00 -28.21 368.74 -10.57 -38.78 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -9.67 Total: -1.03 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -0.11 Total: -12.65 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: -1.33 Total: -47.32 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.21 -10.57 -38.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601315896.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.162 kcal (2) G-P(sol) polarization free energy of solvation -28.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds