Wall clock time and date at job start Tue Mar 31 2020 05:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99881 * 2 1 4 4 H 1.09000 * 109.47227 * 330.00303 * 3 2 1 5 5 C 1.53002 * 109.47113 * 90.00196 * 3 2 1 6 6 C 1.52997 * 109.46817 * 59.99950 * 5 3 2 7 7 C 1.53006 * 109.47127 * 60.00361 * 6 5 3 8 8 C 1.52999 * 109.46626 * 299.99539 * 7 6 5 9 9 H 1.08993 * 109.47839 * 299.99931 * 8 7 6 10 10 N 1.46906 * 109.46904 * 179.97438 * 8 7 6 11 11 C 1.46951 * 111.00138 * 183.79867 * 10 8 7 12 12 C 1.53051 * 109.36698 * 176.81227 * 11 10 8 13 13 N 1.46961 * 109.36176 * 58.40502 * 12 11 10 14 14 C 1.46896 * 111.00100 * 176.81115 * 13 12 11 15 15 C 1.50695 * 109.47351 * 293.80129 * 14 13 12 16 16 H 1.08005 * 120.00122 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00083 * 179.97438 * 15 14 13 18 18 N 1.31505 * 119.99942 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99897 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.46910 * 89.99774 * 19 17 15 21 21 H 1.48491 * 109.47478 * 209.99871 * 19 17 15 22 22 H 1.48502 * 109.47273 * 330.00573 * 19 17 15 23 23 C 1.46961 * 110.88128 * 300.67963 * 13 12 11 24 24 C 1.46961 * 110.99756 * 60.00374 * 10 8 7 25 25 C 1.52996 * 109.47379 * 210.00164 * 3 2 1 26 26 H 1.08999 * 109.47387 * 59.99889 * 1 2 3 27 27 H 1.09000 * 109.46539 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46488 * 299.99631 * 1 2 3 29 29 H 1.09002 * 109.47070 * 300.00130 * 5 3 2 30 30 H 1.08996 * 109.47407 * 179.97438 * 5 3 2 31 31 H 1.09001 * 109.47502 * 300.00518 * 6 5 3 32 32 H 1.09001 * 109.47289 * 180.02562 * 6 5 3 33 33 H 1.08993 * 109.46955 * 60.00011 * 7 6 5 34 34 H 1.09000 * 109.47050 * 179.97438 * 7 6 5 35 35 H 1.08998 * 109.49618 * 296.78702 * 11 10 8 36 36 H 1.09003 * 109.48914 * 56.84923 * 11 10 8 37 37 H 1.08997 * 109.49063 * 298.43901 * 12 11 10 38 38 H 1.08993 * 109.50893 * 178.37951 * 12 11 10 39 39 H 1.09003 * 109.46967 * 53.80259 * 14 13 12 40 40 H 1.09004 * 109.47192 * 173.79935 * 14 13 12 41 41 H 0.97003 * 120.00143 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.48763 * 299.35458 * 23 13 12 43 43 H 1.08995 * 109.50400 * 179.29691 * 23 13 12 44 44 H 1.09004 * 109.48881 * 303.15981 * 24 10 8 45 45 H 1.08997 * 109.48847 * 63.21948 * 24 10 8 46 46 H 1.09001 * 109.46993 * 60.00536 * 25 3 2 47 47 H 1.09000 * 109.47380 * 179.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7714 1.4425 6 6 3.1515 0.7973 2.1636 7 6 4.5003 0.7552 1.4423 8 6 4.2927 0.2893 -0.0001 9 1 3.8494 -0.7064 -0.0002 10 7 5.5875 0.2495 -0.6929 11 6 5.4169 -0.1075 -2.1081 12 6 6.7757 -0.0606 -2.8109 13 7 7.7010 -0.9878 -2.1447 14 6 8.9958 -1.0278 -2.8375 15 6 8.8144 -1.6296 -4.2070 16 1 7.8353 -1.9508 -4.5305 17 6 9.8985 -1.7703 -5.0473 18 7 11.0908 -1.3797 -4.6534 19 14 9.6738 -2.5170 -6.7448 20 1 9.3702 -1.4412 -7.7225 21 1 10.9211 -3.2147 -7.1478 22 1 8.5511 -3.4886 -6.7135 23 6 7.8717 -0.6309 -0.7294 24 6 6.5128 -0.6778 -0.0268 25 6 3.3589 1.2634 -0.7213 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8901 29 1 1.2569 1.8014 1.9564 30 1 2.6614 2.7669 1.4426 31 1 2.7083 -0.1985 2.1636 32 1 3.2990 1.1289 3.1915 33 1 4.9435 1.7509 1.4424 34 1 5.1657 0.0616 1.9564 35 1 5.0037 -1.1134 -2.1823 36 1 4.7375 0.6007 -2.5825 37 1 7.1764 0.9518 -2.7605 38 1 6.6563 -0.3529 -3.8541 39 1 9.3873 -0.0151 -2.9345 40 1 9.6962 -1.6347 -2.2637 41 1 11.8534 -1.4783 -5.2447 42 1 8.2849 0.3751 -0.6554 43 1 8.5511 -1.3389 -0.2549 44 1 6.6325 -0.3853 1.0164 45 1 6.1121 -1.6902 -0.0772 46 1 3.2111 0.9315 -1.7490 47 1 3.8020 2.2592 -0.7217 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601317194.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:41 Heat of formation + Delta-G solvation = -44.315076 kcal Electronic energy + Delta-G solvation = -23452.667422 eV Core-core repulsion = 20248.911661 eV Total energy + Delta-G solvation = -3203.755761 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.95131 -38.31654 -36.25756 -34.21745 -32.40144 -31.07407 -29.91795 -29.63628 -27.13498 -26.68441 -24.71142 -23.59734 -21.98617 -21.71483 -21.07966 -19.65003 -19.07543 -16.75450 -16.26545 -16.21297 -15.65553 -15.13438 -14.88485 -14.48095 -14.39453 -14.10898 -14.02135 -13.54082 -13.39774 -13.11317 -12.75110 -12.58717 -12.37207 -12.25998 -11.91448 -11.61465 -11.44974 -11.34550 -11.09870 -10.89588 -10.80274 -10.73393 -10.60504 -10.47686 -10.36342 -10.14216 -9.98460 -9.61897 -9.59242 -9.10948 -8.40062 -7.97721 -7.14644 -5.98722 -3.99867 3.34215 3.40239 3.44949 3.60447 4.07409 4.45960 4.54130 4.64186 4.83713 5.02584 5.03190 5.06604 5.10558 5.19272 5.31347 5.34859 5.36819 5.42104 5.44026 5.47139 5.59387 5.66220 5.74408 5.84990 5.88174 5.91164 5.94348 6.00725 6.05492 6.12293 6.15715 6.20292 6.36730 6.39863 6.53916 6.69980 6.77030 7.02856 7.29429 7.39670 7.44432 7.48924 7.85242 8.15190 8.28113 8.61700 9.07959 9.64179 11.12220 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029758 B = 0.003478 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.684856 B = 8048.608524 C = 8683.646164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.378 6.378 3 C 0.090 3.910 4 H 0.059 0.941 5 C -0.140 4.140 6 C -0.111 4.111 7 C -0.112 4.112 8 C 0.091 3.909 9 H 0.047 0.953 10 N -0.537 5.537 11 C 0.056 3.944 12 C 0.068 3.932 13 N -0.539 5.539 14 C 0.194 3.806 15 C -0.506 4.506 16 H 0.062 0.938 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.897 3.103 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 C 0.057 3.943 24 C 0.060 3.940 25 C -0.110 4.110 26 H 0.039 0.961 27 H 0.083 0.917 28 H 0.038 0.962 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.027 0.973 38 H 0.084 0.916 39 H -0.009 1.009 40 H 0.029 0.971 41 H 0.261 0.739 42 H 0.029 0.971 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.037 0.963 46 H 0.071 0.929 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.518 6.589 12.635 24.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C 0.032 3.968 4 H 0.078 0.922 5 C -0.178 4.178 6 C -0.149 4.149 7 C -0.150 4.150 8 C -0.017 4.017 9 H 0.065 0.935 10 N -0.262 5.262 11 C -0.072 4.072 12 C -0.060 4.060 13 N -0.264 5.264 14 C 0.069 3.931 15 C -0.545 4.545 16 H 0.081 0.919 17 C -0.146 4.146 18 N -0.539 5.539 19 Si 0.725 3.275 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.072 4.072 24 C -0.068 4.068 25 C -0.148 4.148 26 H 0.058 0.942 27 H 0.101 0.899 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.090 0.910 37 H 0.045 0.955 38 H 0.102 0.898 39 H 0.009 0.991 40 H 0.047 0.953 41 H 0.070 0.930 42 H 0.047 0.953 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.055 0.945 46 H 0.090 0.910 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.197 6.417 12.565 23.824 hybrid contribution -0.181 -0.140 -0.933 0.960 sum -19.377 6.277 11.632 23.456 Atomic orbital electron populations 1.22758 0.81712 1.02545 0.99599 1.87973 1.19000 1.27775 1.94981 1.22155 0.94773 0.84524 0.95370 0.92246 1.22021 0.99883 0.99702 0.96150 1.21399 0.95331 1.00009 0.98210 1.21616 0.96708 1.02039 0.94645 1.21456 0.88974 0.98010 0.93252 0.93498 1.62227 1.10360 1.50976 1.02636 1.22276 0.98122 0.98887 0.87885 1.21984 0.91126 0.94333 0.98593 1.62272 1.14981 1.48678 1.00470 1.19692 0.84204 0.95578 0.93675 1.21169 0.94625 1.39927 0.98730 0.91944 1.24990 0.95149 0.95853 0.98655 1.69960 0.99251 1.47971 1.36710 0.86512 0.77530 0.79302 0.84165 1.20753 1.21288 1.19790 1.22059 0.95124 0.98858 0.91145 1.22181 0.93246 0.94053 0.97341 1.21758 0.92848 1.00891 0.99316 0.94247 0.89859 0.94366 0.92216 0.90997 0.91452 0.92219 0.91384 0.91792 0.94481 0.91032 0.95463 0.89756 0.99136 0.95297 0.92973 0.95268 0.91211 0.91028 0.94512 0.91008 0.89937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 101.05 1.09 1.33 16 2 O -0.38 -4.15 9.00 -35.23 -0.32 -4.47 16 3 C 0.09 0.87 2.92 -26.73 -0.08 0.79 16 4 H 0.06 0.50 7.79 -51.93 -0.40 0.09 16 5 C -0.14 -1.20 5.63 -26.73 -0.15 -1.35 16 6 C -0.11 -1.06 5.78 -26.73 -0.15 -1.21 16 7 C -0.11 -1.25 4.97 -26.73 -0.13 -1.38 16 8 C 0.09 1.18 1.80 -67.71 -0.12 1.06 16 9 H 0.05 0.69 7.68 -51.93 -0.40 0.29 16 10 N -0.54 -8.32 4.58 -226.49 -1.04 -9.36 16 11 C 0.06 0.94 5.23 -3.77 -0.02 0.92 16 12 C 0.07 1.40 5.43 -3.76 -0.02 1.38 16 13 N -0.54 -12.17 4.70 -235.91 -1.11 -13.28 16 14 C 0.19 5.21 4.72 -4.98 -0.02 5.18 16 15 C -0.51 -14.49 8.47 -34.44 -0.29 -14.79 16 16 H 0.06 1.77 7.13 -52.48 -0.37 1.40 16 17 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 19 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 C 0.06 1.10 5.61 -3.76 -0.02 1.08 16 24 C 0.06 0.96 5.32 -3.76 -0.02 0.94 16 25 C -0.11 -1.25 4.59 -26.73 -0.12 -1.37 16 26 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.25 7.87 -51.93 -0.41 -0.16 16 29 H 0.06 0.46 7.87 -51.93 -0.41 0.05 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.71 7.68 -51.93 -0.40 0.31 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.72 6.34 -51.93 -0.33 0.40 16 35 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 1.06 6.06 -51.93 -0.31 0.75 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 1.83 6.79 -51.93 -0.35 1.48 16 39 H -0.01 -0.26 8.12 -51.93 -0.42 -0.69 16 40 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.07 1.31 8.07 -51.93 -0.42 0.89 16 44 H 0.07 1.00 6.14 -51.93 -0.32 0.68 16 45 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.86 6.28 -51.93 -0.33 0.54 16 47 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 350.68 15.07 5.28 5.28 Total: -1.00 -30.76 350.68 -10.28 -41.03 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -8.65 Total: -3.75 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -0.16 Total: -5.94 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -1.41 Total: -49.07 kcal Atomic # 8 Polarization: -4.15 SS G_CDS: -0.32 Total: -4.47 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.76 -10.28 -41.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601317194.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.283 kcal (2) G-P(sol) polarization free energy of solvation -30.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds