Wall clock time and date at job start Tue Mar 31 2020 05:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00037 * 2 1 4 4 H 1.08998 * 109.46805 * 329.99211 * 3 2 1 5 5 C 1.52992 * 109.47691 * 89.99618 * 3 2 1 6 6 C 1.52998 * 109.47430 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47218 * 300.00115 * 6 5 3 8 8 C 1.53009 * 109.47033 * 59.99747 * 7 6 5 9 9 H 1.09000 * 109.46693 * 60.00131 * 8 7 6 10 10 N 1.46898 * 109.46728 * 180.02562 * 8 7 6 11 11 C 1.46951 * 111.00326 * 294.99909 * 10 8 7 12 12 C 1.53050 * 109.36526 * 183.19063 * 11 10 8 13 13 N 1.46958 * 109.36635 * 301.59960 * 12 11 10 14 14 C 1.46895 * 110.99921 * 183.18711 * 13 12 11 15 15 C 1.50706 * 109.47182 * 170.00034 * 14 13 12 16 16 H 1.08000 * 119.99302 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00436 * 179.72677 * 15 14 13 18 18 N 1.31515 * 119.99684 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00405 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47154 * 89.99418 * 19 17 15 21 21 H 1.48493 * 109.47010 * 209.99942 * 19 17 15 22 22 H 1.48502 * 109.46736 * 329.99638 * 19 17 15 23 23 C 1.46960 * 110.87909 * 59.32085 * 13 12 11 24 24 C 1.46959 * 111.00190 * 58.80576 * 10 8 7 25 25 C 1.52998 * 109.46750 * 209.99952 * 3 2 1 26 26 H 1.09003 * 109.47122 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47537 * 300.00337 * 1 2 3 28 28 H 1.08997 * 109.47183 * 60.00663 * 1 2 3 29 29 H 1.09005 * 109.47300 * 300.00137 * 5 3 2 30 30 H 1.09009 * 109.46985 * 59.99649 * 5 3 2 31 31 H 1.08998 * 109.46723 * 60.00164 * 6 5 3 32 32 H 1.08997 * 109.47078 * 179.97438 * 6 5 3 33 33 H 1.09000 * 109.47274 * 300.00235 * 7 6 5 34 34 H 1.08998 * 109.47233 * 179.97438 * 7 6 5 35 35 H 1.09000 * 109.48790 * 63.22828 * 11 10 8 36 36 H 1.08996 * 109.50964 * 303.17224 * 11 10 8 37 37 H 1.09000 * 109.48942 * 181.62976 * 12 11 10 38 38 H 1.09004 * 109.48569 * 61.56926 * 12 11 10 39 39 H 1.09001 * 109.47613 * 50.00380 * 14 13 12 40 40 H 1.08998 * 109.47678 * 290.00275 * 14 13 12 41 41 H 0.97004 * 120.00247 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.48987 * 60.64331 * 23 13 12 43 43 H 1.09000 * 109.48583 * 180.71435 * 23 13 12 44 44 H 1.08999 * 109.48370 * 296.77218 * 24 10 8 45 45 H 1.09000 * 109.49327 * 56.83643 * 24 10 8 46 46 H 1.08997 * 109.47496 * 59.99732 * 25 3 2 47 47 H 1.08998 * 109.47385 * 299.99264 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 -0.5140 5 6 2.2176 1.7715 1.4424 6 6 2.8393 3.1695 1.4423 7 6 4.1879 3.1278 0.7209 8 6 3.9805 2.6618 -0.7216 9 1 3.3149 3.3554 -1.2353 10 7 5.2754 2.6212 -1.4140 11 6 5.8487 3.9686 -1.5382 12 6 7.1547 3.8933 -2.3326 13 7 8.0889 2.9874 -1.6498 14 6 9.3838 2.9469 -2.3423 15 6 10.3862 2.2114 -1.4905 16 1 10.0906 1.8136 -0.5309 17 6 11.6788 2.0411 -1.9389 18 7 12.0369 2.5200 -3.1102 19 14 12.9210 1.1289 -0.8834 20 1 12.8805 -0.3189 -1.2110 21 1 14.2820 1.6591 -1.1510 22 1 12.5880 1.3214 0.5509 23 6 7.5156 1.6400 -1.5257 24 6 6.2096 1.7153 -0.7312 25 6 3.3588 1.2631 -0.7212 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.2567 1.8016 1.9562 30 1 2.8828 1.0775 1.9563 31 1 2.1737 3.8630 0.9285 32 1 2.9866 3.5016 2.4699 33 1 4.8535 2.4342 1.2346 34 1 4.6306 4.1239 0.7205 35 1 6.0498 4.3711 -0.5454 36 1 5.1439 4.6176 -2.0578 37 1 7.5965 4.8873 -2.4012 38 1 6.9495 3.5163 -3.3346 39 1 9.7337 3.9640 -2.5185 40 1 9.2699 2.4316 -3.2960 41 1 12.9462 2.3999 -3.4259 42 1 7.3145 1.2375 -2.5185 43 1 8.2206 0.9913 -1.0058 44 1 6.4148 2.0923 0.2707 45 1 5.7678 0.7213 -0.6627 46 1 3.2111 0.9312 -1.7489 47 1 4.0241 0.5693 -0.2074 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601317195.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:43 Heat of formation + Delta-G solvation = -46.015661 kcal Electronic energy + Delta-G solvation = -23370.475026 eV Core-core repulsion = 20166.645522 eV Total energy + Delta-G solvation = -3203.829504 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.06778 -38.37108 -36.53806 -34.25810 -32.42144 -30.82179 -30.18101 -29.50514 -27.13321 -26.68479 -24.74590 -23.29809 -22.51939 -21.95210 -21.15715 -20.02515 -18.61224 -16.97408 -16.29778 -16.01330 -15.44196 -15.24954 -14.89966 -14.60404 -14.44026 -14.19278 -14.06099 -13.91979 -13.45301 -13.21493 -13.07242 -12.56307 -12.31944 -12.01189 -11.95186 -11.65909 -11.42873 -11.28452 -11.20878 -10.93633 -10.81404 -10.74421 -10.63994 -10.57817 -10.39323 -10.21875 -10.20034 -9.74828 -9.59769 -9.14153 -8.41583 -8.00500 -7.18101 -6.00160 -4.01473 3.33459 3.39489 3.43820 3.44441 4.12664 4.44622 4.52650 4.69231 4.81691 4.92073 4.93070 4.99347 5.09453 5.12356 5.16044 5.30266 5.34340 5.35462 5.39483 5.42401 5.48128 5.58422 5.71076 5.76075 5.82455 5.85110 5.89959 5.96294 5.98372 6.06159 6.12036 6.18656 6.25526 6.35011 6.49168 6.66179 6.74725 7.00420 7.24115 7.32037 7.39751 7.43241 7.83087 8.12733 8.24970 8.58992 9.06212 9.62701 11.10767 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028143 B = 0.003387 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.697409 B = 8263.777724 C = 8552.835607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.092 3.908 4 H 0.059 0.941 5 C -0.140 4.140 6 C -0.111 4.111 7 C -0.157 4.157 8 C 0.091 3.909 9 H 0.078 0.922 10 N -0.532 5.532 11 C 0.060 3.940 12 C 0.056 3.944 13 N -0.538 5.538 14 C 0.194 3.806 15 C -0.506 4.506 16 H 0.062 0.938 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.897 3.103 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 C 0.067 3.933 24 C 0.052 3.948 25 C -0.109 4.109 26 H 0.084 0.916 27 H 0.039 0.961 28 H 0.040 0.960 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.042 0.958 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.030 0.970 39 H 0.029 0.971 40 H -0.009 1.009 41 H 0.261 0.739 42 H 0.028 0.972 43 H 0.085 0.915 44 H 0.042 0.958 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.708 0.000 6.700 23.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C 0.034 3.966 4 H 0.077 0.923 5 C -0.178 4.178 6 C -0.149 4.149 7 C -0.196 4.196 8 C -0.018 4.018 9 H 0.096 0.904 10 N -0.255 5.255 11 C -0.068 4.068 12 C -0.073 4.073 13 N -0.264 5.264 14 C 0.068 3.932 15 C -0.545 4.545 16 H 0.081 0.919 17 C -0.146 4.146 18 N -0.539 5.539 19 Si 0.725 3.275 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.061 4.061 24 C -0.076 4.076 25 C -0.147 4.147 26 H 0.102 0.898 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.048 0.952 39 H 0.047 0.953 40 H 0.009 0.991 41 H 0.070 0.930 42 H 0.046 0.954 43 H 0.103 0.897 44 H 0.060 0.940 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.411 -0.147 6.554 23.350 hybrid contribution 0.549 -0.204 0.479 0.756 sum -21.862 -0.351 7.033 22.968 Atomic orbital electron populations 1.22762 0.81440 1.02562 0.99754 1.87926 1.19317 1.28051 1.95045 1.22113 0.95021 0.84140 0.95315 0.92306 1.22044 1.01129 0.97447 0.97203 1.21401 0.96654 0.96196 1.00649 1.22295 0.97588 1.02307 0.97424 1.21599 0.91854 0.96203 0.92110 0.90383 1.62363 1.02833 1.10042 1.50279 1.22162 0.95772 0.89338 0.99514 1.22062 0.91846 0.97991 0.95374 1.62282 1.04136 1.07998 1.51935 1.19694 0.83895 0.97221 0.92341 1.21158 0.94478 1.34811 1.04032 0.91946 1.24990 0.98430 0.96048 0.95175 1.69963 1.18808 1.46221 1.18884 0.86510 0.80485 0.79773 0.80738 1.20729 1.21283 1.19797 1.21993 0.93601 0.92110 0.98428 1.22337 0.92663 0.96128 0.96424 1.21635 0.94507 0.97167 1.01348 0.89795 0.94285 0.94125 0.92151 0.91035 0.92087 0.91730 0.91115 0.91392 0.94008 0.91397 0.91134 0.95219 0.95301 0.99096 0.92956 0.95410 0.89696 0.93977 0.90922 0.90544 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 101.05 1.09 1.33 16 2 O -0.38 -4.24 10.35 -35.23 -0.36 -4.61 16 3 C 0.09 0.92 2.61 -26.74 -0.07 0.85 16 4 H 0.06 0.53 7.79 -51.93 -0.40 0.12 16 5 C -0.14 -1.28 5.54 -26.74 -0.15 -1.43 16 6 C -0.11 -0.98 5.92 -26.73 -0.16 -1.14 16 7 C -0.16 -1.72 4.50 -26.73 -0.12 -1.84 16 8 C 0.09 1.07 2.23 -67.68 -0.15 0.92 16 9 H 0.08 0.86 8.11 -51.93 -0.42 0.44 16 10 N -0.53 -7.82 4.70 -226.46 -1.06 -8.88 16 11 C 0.06 0.91 5.25 -3.77 -0.02 0.89 16 12 C 0.06 1.05 5.61 -3.77 -0.02 1.03 16 13 N -0.54 -11.87 4.70 -235.91 -1.11 -12.98 16 14 C 0.19 5.14 4.72 -4.98 -0.02 5.12 16 15 C -0.51 -14.36 8.47 -34.44 -0.29 -14.65 16 16 H 0.06 1.75 7.13 -52.49 -0.37 1.38 16 17 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 19 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 23 C 0.07 1.35 5.43 -3.77 -0.02 1.33 16 24 C 0.05 0.84 4.81 -3.77 -0.02 0.82 16 25 C -0.11 -1.24 4.66 -26.70 -0.12 -1.37 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.04 0.26 7.87 -51.93 -0.41 -0.15 16 28 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16 29 H 0.06 0.49 7.87 -51.93 -0.41 0.08 16 30 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.86 6.45 -51.93 -0.34 0.52 16 34 H 0.07 0.78 6.59 -51.93 -0.34 0.44 16 35 H 0.04 0.64 6.60 -51.93 -0.34 0.30 16 36 H 0.07 0.89 8.12 -51.93 -0.42 0.47 16 37 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 38 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.03 0.82 8.03 -51.93 -0.42 0.40 16 40 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.08 1.82 6.79 -51.93 -0.35 1.47 16 44 H 0.04 0.69 6.46 -51.93 -0.34 0.36 16 45 H 0.07 1.07 6.17 -51.93 -0.32 0.75 16 46 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 47 H 0.07 0.93 6.36 -51.93 -0.33 0.60 16 LS Contribution 349.85 15.07 5.27 5.27 Total: -1.00 -30.35 349.85 -10.29 -40.64 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -8.57 Total: -3.27 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -0.17 Total: -6.67 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: -1.44 Total: -48.15 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -0.36 Total: -4.61 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.35 -10.29 -40.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601317195.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.378 kcal (2) G-P(sol) polarization free energy of solvation -30.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds