Wall clock time and date at job start Tue Mar 31 2020 05:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42906 * 113.99618 * 2 1 4 4 H 1.08997 * 109.46740 * 30.00593 * 3 2 1 5 5 C 1.52999 * 109.46996 * 270.00277 * 3 2 1 6 6 C 1.53007 * 109.46642 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47072 * 59.99917 * 6 5 3 8 8 C 1.53003 * 109.47215 * 299.99853 * 7 6 5 9 9 H 1.08999 * 109.46839 * 300.00127 * 8 7 6 10 10 N 1.46897 * 109.46837 * 180.02562 * 8 7 6 11 11 C 1.46960 * 110.99828 * 183.80115 * 10 8 7 12 12 C 1.53047 * 109.36499 * 176.81275 * 11 10 8 13 13 N 1.46959 * 109.36652 * 58.40076 * 12 11 10 14 14 C 1.46901 * 110.99751 * 176.81171 * 13 12 11 15 15 C 1.50698 * 109.47202 * 58.99502 * 14 13 12 16 16 H 1.08000 * 120.00065 * 4.98015 * 15 14 13 17 17 C 1.37876 * 119.99950 * 184.99026 * 15 14 13 18 18 N 1.31513 * 120.00313 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99990 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46905 * 90.00842 * 19 17 15 21 21 H 1.48497 * 109.47279 * 210.00182 * 19 17 15 22 22 H 1.48498 * 109.47253 * 330.00672 * 19 17 15 23 23 C 1.46964 * 110.87809 * 300.67727 * 13 12 11 24 24 C 1.46959 * 111.00236 * 60.00235 * 10 8 7 25 25 C 1.52997 * 109.46965 * 60.00177 * 8 7 6 26 26 H 1.09000 * 109.46610 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46983 * 299.99056 * 1 2 3 28 28 H 1.09002 * 109.47501 * 59.99881 * 1 2 3 29 29 H 1.08991 * 109.47295 * 59.99996 * 5 3 2 30 30 H 1.08998 * 109.47165 * 299.99522 * 5 3 2 31 31 H 1.08998 * 109.46784 * 299.99551 * 6 5 3 32 32 H 1.09000 * 109.46980 * 179.97438 * 6 5 3 33 33 H 1.08997 * 109.47178 * 60.00450 * 7 6 5 34 34 H 1.09003 * 109.46892 * 179.97438 * 7 6 5 35 35 H 1.09005 * 109.48393 * 296.77573 * 11 10 8 36 36 H 1.09002 * 109.49177 * 56.84254 * 11 10 8 37 37 H 1.08998 * 109.49154 * 298.43171 * 12 11 10 38 38 H 1.09000 * 109.50675 * 178.37878 * 12 11 10 39 39 H 1.09004 * 109.46672 * 178.98378 * 14 13 12 40 40 H 1.08995 * 109.47459 * 298.98489 * 14 13 12 41 41 H 0.97000 * 120.00588 * 179.97438 * 18 17 15 42 42 H 1.08995 * 109.48714 * 299.35730 * 23 13 12 43 43 H 1.08991 * 109.48543 * 179.29019 * 23 13 12 44 44 H 1.09000 * 109.48292 * 303.15105 * 24 10 8 45 45 H 1.08999 * 109.48905 * 63.19799 * 24 10 8 46 46 H 1.09000 * 109.46965 * 180.02562 * 25 8 7 47 47 H 1.08999 * 109.47383 * 60.00283 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3449 1.9993 0.5139 5 6 2.2175 1.7715 -1.4425 6 6 2.8403 3.1690 -1.4424 7 6 4.1891 3.1263 -0.7214 8 6 3.9817 2.6603 0.7211 9 1 3.3168 3.3544 1.2351 10 7 5.2766 2.6198 1.4135 11 6 5.1288 2.0900 2.7763 12 6 6.5071 1.9897 3.4341 13 7 7.1355 3.3179 3.4538 14 6 8.4305 3.2774 4.1463 15 6 9.3419 2.2996 3.4503 16 1 9.0240 1.8225 2.5351 17 6 10.5815 2.0142 3.9821 18 7 11.3768 1.1605 3.3751 19 14 11.1315 2.8398 5.5648 20 1 10.7181 2.0105 6.7253 21 1 12.6095 2.9833 5.5606 22 1 10.5041 4.1819 5.6670 23 6 7.2834 3.8476 2.0909 24 6 5.9051 3.9481 1.4332 25 6 3.3589 1.2628 0.7210 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.2568 1.8015 -1.9563 30 1 2.8828 1.0777 -1.9563 31 1 2.1754 3.8631 -0.9284 32 1 2.9885 3.5008 -2.4701 33 1 4.8540 2.4323 -1.2354 34 1 4.6330 4.1218 -0.7217 35 1 4.4954 2.7585 3.3595 36 1 4.6729 1.1008 2.7346 37 1 7.1317 1.3002 2.8662 38 1 6.3974 1.6241 4.4551 39 1 8.8820 4.2693 4.1306 40 1 8.2806 2.9627 5.1790 41 1 12.2490 0.9599 3.7490 42 1 7.9168 3.1792 1.5078 43 1 7.7394 4.8367 2.1328 44 1 6.0152 4.3134 0.4122 45 1 5.2803 4.6376 2.0009 46 1 3.2108 0.9310 1.7487 47 1 4.0239 0.5687 0.2071 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601317196.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:45 Heat of formation + Delta-G solvation = -42.623866 kcal Electronic energy + Delta-G solvation = -23456.887770 eV Core-core repulsion = 20253.205345 eV Total energy + Delta-G solvation = -3203.682425 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.89293 -38.37588 -36.60447 -34.41880 -32.29338 -31.03733 -30.00345 -29.64707 -27.43459 -26.65008 -24.74148 -23.51777 -21.97864 -21.66620 -21.03541 -19.88163 -19.03008 -16.95848 -16.77691 -16.16391 -15.38959 -15.16223 -14.81867 -14.51422 -14.26313 -14.20858 -14.13734 -13.89753 -13.56521 -13.07239 -12.79182 -12.58350 -12.32164 -12.19459 -12.07373 -11.76521 -11.47553 -11.15791 -11.11986 -10.93744 -10.87576 -10.67458 -10.58818 -10.52725 -10.38166 -10.12754 -9.94645 -9.82749 -9.60322 -9.43763 -8.56602 -8.01524 -7.16338 -6.07234 -4.06878 3.29179 3.36877 3.40806 3.47451 4.09179 4.41953 4.54653 4.70807 4.85425 4.96565 4.97929 5.04266 5.13456 5.15590 5.19694 5.25964 5.31167 5.35746 5.41125 5.44456 5.49621 5.63862 5.75350 5.85233 5.86493 5.90606 5.95412 5.96322 6.03675 6.09758 6.16085 6.18907 6.34671 6.36537 6.60251 6.81686 6.91197 6.95956 7.03400 7.08620 7.38840 7.41596 7.59474 8.08958 8.13173 8.48409 8.97074 9.55565 11.05699 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030800 B = 0.003509 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.871643 B = 7976.845167 C = 8268.240166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.092 3.908 4 H 0.057 0.943 5 C -0.140 4.140 6 C -0.114 4.114 7 C -0.117 4.117 8 C 0.092 3.908 9 H 0.036 0.964 10 N -0.530 5.530 11 C 0.056 3.944 12 C 0.063 3.937 13 N -0.538 5.538 14 C 0.155 3.845 15 C -0.550 4.550 16 H 0.077 0.923 17 C 0.072 3.928 18 N -0.899 5.899 19 Si 0.879 3.121 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.265 1.265 23 C 0.062 3.938 24 C 0.059 3.941 25 C -0.111 4.111 26 H 0.084 0.916 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.031 0.969 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.026 0.974 40 H 0.024 0.976 41 H 0.263 0.737 42 H 0.053 0.947 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.032 0.968 46 H 0.071 0.929 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.004 3.162 -7.776 22.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C 0.034 3.966 4 H 0.075 0.925 5 C -0.178 4.178 6 C -0.152 4.152 7 C -0.154 4.154 8 C -0.017 4.017 9 H 0.053 0.947 10 N -0.255 5.255 11 C -0.072 4.072 12 C -0.066 4.066 13 N -0.262 5.262 14 C 0.028 3.972 15 C -0.588 4.588 16 H 0.095 0.905 17 C -0.131 4.131 18 N -0.537 5.537 19 Si 0.706 3.294 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.189 1.189 23 C -0.067 4.067 24 C -0.069 4.069 25 C -0.149 4.149 26 H 0.102 0.898 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.049 0.951 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.044 0.956 40 H 0.042 0.958 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.050 0.950 46 H 0.090 0.910 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.705 2.919 -7.746 22.298 hybrid contribution 0.265 0.519 0.840 1.022 sum -20.440 3.438 -6.906 21.847 Atomic orbital electron populations 1.22762 0.81473 1.02566 0.99727 1.87935 1.19279 1.28018 1.95049 1.22122 0.94927 0.84094 0.95451 0.92507 1.22038 1.01130 0.97492 0.97114 1.21465 0.96804 0.96237 1.00723 1.21673 0.97015 1.01993 0.94744 1.21472 0.90123 0.95345 0.94722 0.94658 1.62119 1.21219 1.24803 1.17385 1.22293 0.98056 0.99145 0.87663 1.21951 0.93006 0.92023 0.99587 1.62626 1.24866 1.22937 1.15739 1.20141 0.85924 0.96858 0.94273 1.21714 1.00587 1.25291 1.11237 0.90473 1.24975 0.96466 0.94525 0.97115 1.69931 1.09692 1.34239 1.39849 0.86804 0.77759 0.80726 0.84128 1.20239 1.21368 1.18946 1.21955 0.94369 1.00008 0.90337 1.22251 0.96097 0.88819 0.99725 1.21673 0.94638 0.97521 1.01076 0.89773 0.94185 0.94275 0.92194 0.90825 0.92209 0.91429 0.90662 0.91480 0.95066 0.90734 0.92529 0.91485 0.95585 0.95762 0.92731 0.92840 0.91508 0.90866 0.95015 0.91042 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.38 -4.40 10.35 -35.23 -0.36 -4.77 16 3 C 0.09 0.97 2.61 -26.73 -0.07 0.90 16 4 H 0.06 0.55 7.79 -51.93 -0.40 0.14 16 5 C -0.14 -1.31 5.54 -26.73 -0.15 -1.46 16 6 C -0.11 -1.01 5.92 -26.73 -0.16 -1.17 16 7 C -0.12 -1.28 4.98 -26.73 -0.13 -1.41 16 8 C 0.09 1.15 1.94 -67.71 -0.13 1.01 16 9 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 10 N -0.53 -8.23 4.58 -226.49 -1.04 -9.27 16 11 C 0.06 0.91 5.23 -3.77 -0.02 0.89 16 12 C 0.06 1.26 5.24 -3.77 -0.02 1.24 16 13 N -0.54 -11.41 4.92 -235.91 -1.16 -12.57 16 14 C 0.15 3.77 4.21 -4.98 -0.02 3.74 16 15 C -0.55 -15.42 8.21 -34.44 -0.28 -15.70 16 16 H 0.08 2.37 6.07 -52.49 -0.32 2.06 16 17 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 18 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 19 Si 0.88 21.57 27.37 -169.99 -4.65 16.92 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.26 -6.27 6.69 56.52 0.38 -5.89 16 23 C 0.06 1.21 5.32 -3.76 -0.02 1.19 16 24 C 0.06 0.93 5.32 -3.77 -0.02 0.91 16 25 C -0.11 -1.35 4.50 -26.73 -0.12 -1.47 16 26 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.04 0.29 8.08 -51.93 -0.42 -0.13 16 28 H 0.04 0.27 7.87 -51.93 -0.41 -0.14 16 29 H 0.06 0.49 7.87 -51.93 -0.41 0.09 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.72 6.34 -51.93 -0.33 0.39 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 1.11 6.06 -51.93 -0.31 0.80 16 37 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 39 H 0.03 0.64 7.52 -51.93 -0.39 0.25 16 40 H 0.02 0.59 7.29 -51.93 -0.38 0.21 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.05 1.20 6.78 -51.93 -0.35 0.85 16 43 H 0.07 1.26 8.12 -51.93 -0.42 0.83 16 44 H 0.07 1.03 6.14 -51.93 -0.32 0.71 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.90 6.28 -51.93 -0.33 0.57 16 47 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 345.93 15.07 5.21 5.21 Total: -1.00 -30.51 345.93 -9.90 -40.41 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -8.52 Total: -1.11 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -0.15 Total: -8.01 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: -1.42 Total: -48.66 kcal Atomic # 8 Polarization: -4.40 SS G_CDS: -0.36 Total: -4.77 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.65 Total: 16.92 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.51 -9.90 -40.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601317196.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.213 kcal (2) G-P(sol) polarization free energy of solvation -30.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds