Wall clock time and date at job start Tue Mar 31 2020 05:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00122 * 2 1 4 4 H 1.09001 * 109.46653 * 30.00263 * 3 2 1 5 5 C 1.52997 * 109.47280 * 270.00184 * 3 2 1 6 6 C 1.52992 * 109.47323 * 299.99799 * 5 3 2 7 7 C 1.52998 * 109.47258 * 300.00010 * 6 5 3 8 8 C 1.53002 * 109.47272 * 59.99869 * 7 6 5 9 9 H 1.09001 * 109.46935 * 59.99847 * 8 7 6 10 10 N 1.46895 * 109.47501 * 179.97438 * 8 7 6 11 11 C 1.46960 * 110.99996 * 300.00190 * 10 8 7 12 12 C 1.53050 * 109.36394 * 183.18525 * 11 10 8 13 13 N 1.46958 * 109.36635 * 301.59800 * 12 11 10 14 14 C 1.46895 * 110.99921 * 183.18711 * 13 12 11 15 15 C 1.50706 * 109.47182 * 170.00034 * 14 13 12 16 16 H 1.08005 * 119.99758 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00102 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47057 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47389 * 300.00068 * 19 17 15 22 22 H 1.48504 * 109.47102 * 60.00417 * 19 17 15 23 23 C 1.46960 * 110.87909 * 59.32085 * 13 12 11 24 24 C 1.46958 * 110.99921 * 63.79915 * 10 8 7 25 25 C 1.52996 * 109.46830 * 300.00471 * 8 7 6 26 26 H 1.08999 * 109.46695 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46732 * 299.99485 * 1 2 3 28 28 H 1.08994 * 109.47262 * 59.99729 * 1 2 3 29 29 H 1.09005 * 109.46832 * 60.00223 * 5 3 2 30 30 H 1.09001 * 109.47291 * 179.97438 * 5 3 2 31 31 H 1.09003 * 109.47380 * 60.00398 * 6 5 3 32 32 H 1.09003 * 109.47446 * 179.97438 * 6 5 3 33 33 H 1.09001 * 109.47265 * 299.99918 * 7 6 5 34 34 H 1.09003 * 109.47138 * 179.97438 * 7 6 5 35 35 H 1.09000 * 109.48987 * 63.22251 * 11 10 8 36 36 H 1.09001 * 109.49037 * 303.15419 * 11 10 8 37 37 H 1.09000 * 109.48942 * 181.62816 * 12 11 10 38 38 H 1.08999 * 109.48818 * 61.56353 * 12 11 10 39 39 H 1.09001 * 109.47613 * 50.00380 * 14 13 12 40 40 H 1.09006 * 109.47521 * 289.99997 * 14 13 12 41 41 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 42 42 H 1.09000 * 109.48987 * 60.64331 * 23 13 12 43 43 H 1.09001 * 109.49037 * 180.71163 * 23 13 12 44 44 H 1.08999 * 109.48701 * 296.77914 * 24 10 8 45 45 H 1.08996 * 109.48811 * 56.82345 * 24 10 8 46 46 H 1.09003 * 109.47190 * 179.97438 * 25 8 7 47 47 H 1.09003 * 109.47317 * 299.99172 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2177 1.7714 -1.4425 6 6 3.1514 0.7975 -2.1638 7 6 4.5001 0.7553 -1.4426 8 6 4.2928 0.2893 -0.0001 9 1 3.8494 -0.7065 -0.0001 10 7 5.5877 0.2481 0.6922 11 6 6.5120 -0.6797 0.0256 12 6 7.8178 -0.7538 0.8205 13 7 8.4050 0.5897 0.9194 14 6 9.7000 0.5485 1.6117 15 6 10.3826 1.8857 1.4802 16 1 9.9023 2.6861 0.9371 17 6 11.6203 2.0871 2.0533 18 7 12.2055 1.1122 2.7143 19 14 12.4667 3.7443 1.8897 20 1 13.7757 3.7028 2.5896 21 1 12.6827 4.0502 0.4527 22 1 11.6143 4.7976 2.4974 23 6 7.4807 1.5175 1.5860 24 6 6.1749 1.5916 0.7911 25 6 3.3589 1.2632 0.7212 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.2568 1.8016 -1.9562 30 1 2.6606 2.7674 -1.4425 31 1 2.7081 -0.1983 -2.1639 32 1 3.2988 1.1292 -3.1916 33 1 4.9435 1.7510 -1.4425 34 1 5.1652 0.0610 -1.9562 35 1 6.7203 -0.3234 -0.9833 36 1 6.0599 -1.6703 -0.0243 37 1 8.5157 -1.4192 0.3123 38 1 7.6134 -1.1359 1.8207 39 1 10.3260 -0.2243 1.1658 40 1 9.5412 0.3238 2.6664 41 1 11.7661 0.2516 2.7989 42 1 7.2725 1.1612 2.5949 43 1 7.9328 2.5081 1.6359 44 1 6.3793 1.9737 -0.2091 45 1 5.4769 2.2571 1.2990 46 1 3.2108 0.9311 1.7487 47 1 3.8023 2.2590 0.7213 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601317197.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:47 Heat of formation + Delta-G solvation = -47.101559 kcal Electronic energy + Delta-G solvation = -23577.395040 eV Core-core repulsion = 20373.518448 eV Total energy + Delta-G solvation = -3203.876592 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.14541 -38.40940 -36.35181 -34.26582 -32.57051 -30.93274 -30.16959 -29.49421 -26.90109 -26.66770 -24.50929 -23.37813 -22.62480 -21.98076 -21.27583 -19.91940 -18.62183 -16.85415 -16.63356 -16.11926 -15.68115 -15.20346 -14.98259 -14.47708 -14.23011 -14.10438 -13.91321 -13.86834 -13.64604 -13.07771 -12.83441 -12.76238 -12.36706 -12.16200 -11.97912 -11.62688 -11.53172 -11.29969 -11.13657 -11.00482 -10.91738 -10.72523 -10.61172 -10.56343 -10.26588 -10.15719 -10.06522 -9.81733 -9.69899 -8.63653 -8.34622 -7.97425 -7.26635 -6.33936 -4.02450 3.45716 3.48304 3.56902 3.66791 4.06319 4.54403 4.55160 4.63502 4.77465 4.89130 5.00063 5.01676 5.08253 5.12518 5.21809 5.33391 5.38443 5.41133 5.42097 5.43144 5.51908 5.59698 5.67518 5.74295 5.81215 5.83542 5.88475 5.94310 6.04247 6.07357 6.09298 6.18992 6.23617 6.40162 6.43991 6.59584 6.67351 6.99952 7.03343 7.13126 7.35175 7.37837 7.84826 8.04917 8.36717 8.61607 8.90388 9.68419 11.05286 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033805 B = 0.003410 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.084916 B = 8209.383144 C = 8455.613054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.378 6.378 3 C 0.091 3.909 4 H 0.060 0.940 5 C -0.141 4.141 6 C -0.107 4.107 7 C -0.154 4.154 8 C 0.093 3.907 9 H 0.087 0.913 10 N -0.534 5.534 11 C 0.061 3.939 12 C 0.055 3.945 13 N -0.532 5.532 14 C 0.183 3.817 15 C -0.587 4.587 16 H 0.056 0.944 17 C 0.013 3.987 18 N -0.915 5.915 19 Si 1.072 2.928 20 H -0.283 1.283 21 H -0.288 1.288 22 H -0.288 1.288 23 C 0.069 3.931 24 C 0.052 3.948 25 C -0.110 4.110 26 H 0.083 0.917 27 H 0.039 0.961 28 H 0.038 0.962 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.042 0.958 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.029 0.971 39 H 0.019 0.981 40 H -0.020 1.020 41 H 0.267 0.733 42 H 0.026 0.974 43 H 0.085 0.915 44 H 0.041 0.959 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.239 -0.478 -7.264 24.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C 0.033 3.967 4 H 0.078 0.922 5 C -0.179 4.179 6 C -0.145 4.145 7 C -0.193 4.193 8 C -0.016 4.016 9 H 0.105 0.895 10 N -0.257 5.257 11 C -0.067 4.067 12 C -0.074 4.074 13 N -0.257 5.257 14 C 0.058 3.942 15 C -0.626 4.626 16 H 0.074 0.926 17 C -0.190 4.190 18 N -0.552 5.552 19 Si 0.900 3.100 20 H -0.209 1.209 21 H -0.214 1.214 22 H -0.215 1.215 23 C -0.060 4.060 24 C -0.075 4.075 25 C -0.148 4.148 26 H 0.101 0.899 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.047 0.953 39 H 0.037 0.963 40 H -0.002 1.002 41 H 0.077 0.923 42 H 0.045 0.955 43 H 0.103 0.897 44 H 0.059 0.941 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.724 0.185 -6.832 22.774 hybrid contribution -1.631 -0.670 -0.473 1.825 sum -23.355 -0.485 -7.305 24.475 Atomic orbital electron populations 1.22755 0.81728 1.02515 0.99622 1.87960 1.18981 1.27753 1.94980 1.22144 0.94739 0.84542 0.95270 0.92224 1.22030 0.99930 0.99682 0.96226 1.21330 0.95114 0.99947 0.98159 1.22242 0.97397 1.02073 0.97550 1.21586 0.89706 0.99832 0.90438 0.89527 1.62427 1.03041 1.09296 1.50986 1.22135 0.92435 0.95799 0.96355 1.22097 0.94351 0.92590 0.98386 1.62186 1.04211 1.06019 1.53239 1.19798 0.85280 0.98354 0.90796 1.21964 1.05426 0.97828 1.37345 0.92581 1.25848 0.94961 1.04604 0.93619 1.70791 1.40676 1.04099 1.39587 0.83496 0.76116 0.74089 0.76257 1.20853 1.21413 1.21491 1.21991 0.90737 0.98719 0.94569 1.22308 0.95804 0.89823 0.99612 1.21748 0.92943 1.00222 0.99841 0.89860 0.94248 0.94379 0.92142 0.91110 0.91388 0.92468 0.91760 0.91635 0.93960 0.91286 0.91254 0.95291 0.96305 1.00201 0.92316 0.95543 0.89659 0.94111 0.90992 0.90560 0.90412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.82 101.05 1.09 1.32 16 2 O -0.38 -3.94 9.00 -35.23 -0.32 -4.26 16 3 C 0.09 0.87 2.92 -26.73 -0.08 0.79 16 4 H 0.06 0.49 7.79 -51.93 -0.40 0.09 16 5 C -0.14 -1.25 5.63 -26.74 -0.15 -1.40 16 6 C -0.11 -1.07 5.78 -26.74 -0.15 -1.22 16 7 C -0.15 -1.81 4.51 -26.73 -0.12 -1.93 16 8 C 0.09 1.18 2.16 -67.72 -0.15 1.03 16 9 H 0.09 1.17 7.68 -51.93 -0.40 0.78 16 10 N -0.53 -8.19 4.74 -226.49 -1.07 -9.26 16 11 C 0.06 0.97 5.13 -3.77 -0.02 0.95 16 12 C 0.05 1.05 5.61 -3.77 -0.02 1.03 16 13 N -0.53 -11.98 4.70 -235.90 -1.11 -13.09 16 14 C 0.18 4.90 4.03 -4.98 -0.02 4.88 16 15 C -0.59 -16.93 8.47 -34.44 -0.29 -17.23 16 16 H 0.06 1.61 7.13 -52.48 -0.37 1.24 16 17 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 18 N -0.91 -28.33 13.65 55.43 0.76 -27.58 16 19 Si 1.07 25.59 29.90 -169.99 -5.08 20.50 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 C 0.07 1.40 5.43 -3.77 -0.02 1.38 16 24 C 0.05 0.85 4.83 -3.77 -0.02 0.83 16 25 C -0.11 -1.22 4.60 -26.73 -0.12 -1.35 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.04 0.26 8.08 -51.93 -0.42 -0.16 16 28 H 0.04 0.24 7.87 -51.93 -0.41 -0.17 16 29 H 0.06 0.48 7.87 -51.93 -0.41 0.07 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.71 7.68 -51.93 -0.40 0.32 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.81 6.56 -51.93 -0.34 0.47 16 34 H 0.07 0.82 6.47 -51.93 -0.34 0.49 16 35 H 0.04 0.69 6.48 -51.93 -0.34 0.35 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16 38 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.02 0.53 7.89 -51.93 -0.41 0.12 16 40 H -0.02 -0.56 7.99 -51.93 -0.41 -0.97 16 41 H 0.27 8.25 7.22 -40.82 -0.29 7.96 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.09 1.87 6.79 -51.93 -0.35 1.51 16 44 H 0.04 0.68 6.57 -51.93 -0.34 0.34 16 45 H 0.07 1.03 6.06 -51.93 -0.31 0.72 16 46 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.08 0.84 6.28 -51.93 -0.33 0.52 16 LS Contribution 346.17 15.07 5.22 5.22 Total: -1.00 -31.29 346.17 -10.23 -41.52 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -8.45 Total: -2.41 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -0.17 Total: -10.64 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: -1.43 Total: -49.93 kcal Atomic # 8 Polarization: -3.94 SS G_CDS: -0.32 Total: -4.26 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -5.08 Total: 20.50 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.29 -10.23 -41.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601317197.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.582 kcal (2) G-P(sol) polarization free energy of solvation -31.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds