Wall clock time and date at job start Tue Mar 31 2020 06:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46864 * 2 1 4 4 N 1.46894 * 109.46775 * 120.00008 * 2 1 3 5 5 C 1.46853 * 110.99871 * 180.02562 * 4 2 1 6 6 C 1.53036 * 109.52248 * 185.83890 * 5 4 2 7 7 C 1.53118 * 109.27832 * 300.81857 * 6 5 4 8 8 N 1.46905 * 109.52133 * 177.56102 * 7 6 5 9 9 C 1.46902 * 110.99805 * 56.17534 * 8 7 6 10 10 C 1.46892 * 110.99934 * 180.12722 * 8 7 6 11 11 C 1.53005 * 109.47373 * 164.10984 * 10 8 7 12 12 H 1.09003 * 109.46698 * 55.11539 * 11 10 8 13 13 C 1.52990 * 109.47219 * 175.11680 * 11 10 8 14 14 C 1.52998 * 109.46773 * 295.11999 * 11 10 8 15 15 C 1.50699 * 109.47053 * 174.99608 * 14 11 10 16 16 H 1.08000 * 119.99946 * 359.97438 * 15 14 11 17 17 C 1.37881 * 120.00240 * 179.97438 * 15 14 11 18 18 N 1.31516 * 119.99780 * 359.73151 * 17 15 14 19 19 Si 1.86793 * 120.00214 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47270 * 179.72894 * 19 17 15 21 21 H 1.48500 * 109.47142 * 299.73203 * 19 17 15 22 22 H 1.48505 * 109.47062 * 59.72833 * 19 17 15 23 23 C 1.53118 * 109.21072 * 57.62604 * 7 6 5 24 24 C 1.46845 * 111.00281 * 304.20750 * 4 2 1 25 25 H 1.08993 * 109.47249 * 299.99813 * 1 2 3 26 26 H 1.09003 * 109.47094 * 59.99993 * 1 2 3 27 27 H 1.09000 * 109.46961 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46878 * 239.99933 * 2 1 3 29 29 H 1.09002 * 109.47040 * 59.99907 * 3 2 1 30 30 H 1.09003 * 109.46904 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47134 * 299.99903 * 3 2 1 32 32 H 1.09000 * 109.46135 * 65.82105 * 5 4 2 33 33 H 1.08998 * 109.46014 * 305.85599 * 5 4 2 34 34 H 1.09000 * 109.50276 * 180.87652 * 6 5 4 35 35 H 1.09004 * 109.50377 * 60.76386 * 6 5 4 36 36 H 1.08995 * 109.52462 * 297.68772 * 7 6 5 37 37 H 1.09006 * 109.46982 * 178.04994 * 9 8 7 38 38 H 1.09002 * 109.46820 * 298.04146 * 9 8 7 39 39 H 1.08996 * 109.47351 * 58.04530 * 9 8 7 40 40 H 1.09000 * 109.47621 * 44.11104 * 10 8 7 41 41 H 1.09002 * 109.47527 * 284.10836 * 10 8 7 42 42 H 1.09003 * 109.46894 * 176.45226 * 13 11 10 43 43 H 1.08999 * 109.47694 * 296.45355 * 13 11 10 44 44 H 1.09001 * 109.47280 * 56.45721 * 13 11 10 45 45 H 1.08998 * 109.47584 * 54.99802 * 14 11 10 46 46 H 1.09000 * 109.47379 * 294.99888 * 14 11 10 47 47 H 0.96996 * 119.99775 * 0.26645 * 18 17 15 48 48 H 1.08999 * 109.50545 * 62.32145 * 23 7 6 49 49 H 1.09005 * 109.50051 * 182.43126 * 23 7 6 50 50 H 1.08999 * 109.46792 * 294.17901 * 24 4 2 51 51 H 1.09007 * 109.46085 * 54.15847 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 3.4876 -0.7116 1.2337 6 6 3.9605 -1.5627 2.4143 7 6 3.4087 -0.9735 3.7154 8 7 3.8110 -1.8196 4.8470 9 6 5.2711 -1.9734 4.8962 10 6 3.2951 -1.2845 6.1139 11 6 3.3811 -2.3630 7.1958 12 1 4.4062 -2.7272 7.2650 13 6 2.9585 -1.7704 8.5415 14 6 2.4511 -3.5229 6.8347 15 6 2.6266 -4.6374 7.8338 16 1 3.3314 -4.5293 8.6450 17 6 1.8875 -5.7950 7.7124 18 7 1.0255 -5.9244 6.7276 19 14 2.1046 -7.1760 8.9512 20 1 1.1969 -8.2990 8.6048 21 1 3.5117 -7.6500 8.9226 22 1 1.7780 -6.6770 10.3112 23 6 1.8806 -0.9187 3.6354 24 6 1.4683 -0.0872 2.4185 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 3.8615 0.3060 1.3467 33 1 3.8670 -1.1366 0.3045 34 1 5.0500 -1.5639 2.4487 35 1 3.5986 -2.5839 2.2949 36 1 3.8024 0.0332 3.8553 37 1 5.5440 -2.5755 5.7629 38 1 5.6152 -2.4677 3.9876 39 1 5.7375 -0.9914 4.9745 40 1 2.2559 -0.9821 5.9844 41 1 3.8900 -0.4216 6.4131 42 1 2.9593 -2.5535 9.2997 43 1 3.6584 -0.9857 8.8289 44 1 1.9567 -1.3497 8.4547 45 1 2.6955 -3.8876 5.8370 46 1 1.4170 -3.1786 6.8523 47 1 0.9125 -5.2071 6.0846 48 1 1.4849 -1.9295 3.5358 49 1 1.4849 -0.4602 4.5417 50 1 1.8521 0.9274 2.5258 51 1 0.3808 -0.0588 2.3501 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602437579.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:00 Heat of formation + Delta-G solvation = -12.452148 kcal Electronic energy + Delta-G solvation = -23921.388478 eV Core-core repulsion = 20854.847492 eV Total energy + Delta-G solvation = -3066.540986 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.85255 -37.76876 -35.14631 -33.32456 -31.91026 -31.11433 -29.43367 -27.52502 -26.82770 -26.36498 -24.91272 -22.94647 -22.84958 -21.89235 -20.20287 -19.15901 -18.98177 -16.69413 -16.44173 -15.45192 -15.03911 -14.79917 -14.68355 -14.27425 -14.13675 -13.77644 -13.62695 -13.31906 -13.26598 -12.86091 -12.62469 -12.40383 -12.15854 -12.02782 -11.78776 -11.56296 -11.50138 -11.40235 -11.23456 -11.03114 -10.99634 -10.85184 -10.81638 -10.68014 -10.41995 -10.10323 -10.02476 -9.95384 -9.64892 -9.23233 -8.31992 -8.30019 -8.13984 -7.80760 -6.16450 -3.83040 3.52040 3.54427 3.72860 3.78704 4.18758 4.63828 4.68191 4.83783 4.84399 4.89337 5.10821 5.19753 5.26838 5.28848 5.38969 5.43869 5.49462 5.53158 5.59694 5.59863 5.62474 5.67999 5.72700 5.73484 5.76740 5.82787 5.93439 5.98904 6.01703 6.06612 6.08460 6.16735 6.24367 6.25776 6.35486 6.42633 6.48664 6.60403 6.94066 7.02952 7.07338 7.08332 7.24717 7.51316 7.54918 7.73769 7.92736 8.45187 8.68166 9.10387 9.87890 11.24287 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.020951 B = 0.003829 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.111131 B = 7310.105225 C = 7854.206706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.076 3.924 3 C -0.187 4.187 4 N -0.529 5.529 5 C 0.059 3.941 6 C -0.111 4.111 7 C 0.089 3.911 8 N -0.524 5.524 9 C 0.025 3.975 10 C 0.059 3.941 11 C -0.076 4.076 12 H 0.056 0.944 13 C -0.133 4.133 14 C 0.025 3.975 15 C -0.595 4.595 16 H 0.044 0.956 17 C 0.013 3.987 18 N -0.917 5.917 19 Si 1.064 2.936 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.291 1.291 23 C -0.112 4.112 24 C 0.054 3.946 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.031 0.969 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.026 0.974 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.013 0.987 40 H 0.071 0.929 41 H 0.016 0.984 42 H 0.066 0.934 43 H 0.028 0.972 44 H 0.042 0.958 45 H 0.024 0.976 46 H -0.002 1.002 47 H 0.270 0.730 48 H 0.085 0.915 49 H 0.067 0.933 50 H 0.029 0.971 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.825 15.363 -12.338 20.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 C -0.246 4.246 4 N -0.253 5.253 5 C -0.070 4.070 6 C -0.149 4.149 7 C -0.019 4.019 8 N -0.248 5.248 9 C -0.123 4.123 10 C -0.069 4.069 11 C -0.095 4.095 12 H 0.074 0.926 13 C -0.191 4.191 14 C -0.012 4.012 15 C -0.634 4.634 16 H 0.062 0.938 17 C -0.190 4.190 18 N -0.554 5.554 19 Si 0.893 3.107 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.217 1.217 23 C -0.150 4.150 24 C -0.074 4.074 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.044 0.956 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.032 0.968 40 H 0.089 0.911 41 H 0.034 0.966 42 H 0.085 0.915 43 H 0.047 0.953 44 H 0.061 0.939 45 H 0.043 0.957 46 H 0.016 0.984 47 H 0.080 0.920 48 H 0.104 0.896 49 H 0.085 0.915 50 H 0.047 0.953 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.930 12.883 -12.015 17.858 hybrid contribution 1.289 3.284 -0.167 3.532 sum 4.219 16.167 -12.182 20.678 Atomic orbital electron populations 1.21920 0.94338 1.02736 1.01574 1.21695 0.95787 0.92103 0.93671 1.22496 1.01476 0.98455 1.02201 1.62181 1.07892 1.53452 1.01778 1.22070 0.87538 0.98272 0.99070 1.21694 0.99596 1.01048 0.92579 1.21601 0.95611 0.93546 0.91191 1.61922 1.10951 1.49225 1.02675 1.22412 0.87784 0.99187 1.02907 1.22358 0.99288 0.95772 0.89445 1.21081 1.00766 0.95682 0.91933 0.92582 1.21712 0.99226 0.99606 0.98571 1.19125 0.92854 0.91942 0.97268 1.22111 1.25640 1.02461 1.13146 0.93791 1.25707 0.93781 0.99825 0.99720 1.70742 1.34139 1.36159 1.14340 0.83624 0.75887 0.76071 0.75107 1.20952 1.21700 1.21739 1.21714 0.94821 1.02192 0.96284 1.22174 1.00125 0.95482 0.89642 0.92387 0.92443 0.91551 0.90074 0.92480 0.92538 0.92243 0.95083 0.90879 0.91699 0.89822 0.95630 0.90854 0.91605 0.96809 0.91101 0.96568 0.91521 0.95301 0.93919 0.95738 0.98387 0.91968 0.89608 0.91451 0.95252 0.90172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.84 37.16 0.33 -0.99 16 2 C 0.08 0.72 3.03 -67.72 -0.20 0.52 16 3 C -0.19 -1.58 8.51 37.16 0.32 -1.27 16 4 N -0.53 -6.17 4.68 -226.68 -1.06 -7.23 16 5 C 0.06 0.66 4.89 -3.83 -0.02 0.64 16 6 C -0.11 -1.44 4.93 -26.65 -0.13 -1.58 16 7 C 0.09 1.29 2.01 -67.59 -0.14 1.15 16 8 N -0.52 -8.93 3.95 -234.74 -0.93 -9.86 16 9 C 0.03 0.39 8.90 60.07 0.53 0.92 16 10 C 0.06 1.05 4.22 -3.83 -0.02 1.03 16 11 C -0.08 -1.59 2.35 -90.62 -0.21 -1.81 16 12 H 0.06 1.22 6.50 -51.93 -0.34 0.88 16 13 C -0.13 -2.60 9.06 37.15 0.34 -2.27 16 14 C 0.03 0.65 3.70 -27.88 -0.10 0.55 16 15 C -0.60 -17.21 8.36 -34.44 -0.29 -17.50 16 16 H 0.04 1.25 7.07 -52.49 -0.37 0.88 16 17 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 18 N -0.92 -28.91 13.65 55.43 0.76 -28.16 16 19 Si 1.06 26.11 29.90 -169.99 -5.08 21.02 16 20 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 C -0.11 -1.62 5.13 -26.65 -0.14 -1.76 16 24 C 0.05 0.64 4.67 -3.83 -0.02 0.63 16 25 H 0.06 0.52 6.22 -51.93 -0.32 0.20 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.51 6.63 -51.93 -0.34 0.17 16 30 H 0.06 0.48 6.53 -51.93 -0.34 0.14 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.03 0.33 6.63 -51.93 -0.34 -0.01 16 33 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 34 H 0.06 0.77 6.55 -51.93 -0.34 0.43 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 38 H 0.07 0.92 6.41 -51.93 -0.33 0.59 16 39 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.07 1.27 5.68 -51.93 -0.30 0.97 16 41 H 0.02 0.27 8.05 -51.93 -0.42 -0.15 16 42 H 0.07 1.42 6.86 -51.93 -0.36 1.06 16 43 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.02 0.69 7.49 -51.93 -0.39 0.30 16 46 H 0.00 -0.06 8.00 -51.93 -0.42 -0.48 16 47 H 0.27 8.55 7.22 -40.82 -0.29 8.25 16 48 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 49 H 0.07 0.98 6.24 -51.93 -0.32 0.65 16 50 H 0.03 0.34 6.71 -51.93 -0.35 -0.01 16 51 H 0.08 0.92 5.90 -51.93 -0.31 0.61 16 LS Contribution 368.22 15.07 5.55 5.55 Total: -1.00 -30.95 368.22 -10.27 -41.22 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -9.66 Total: -1.11 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: 0.15 Total: -21.44 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: -1.23 Total: -45.24 kcal Atomic # 14 Polarization: 26.11 SS G_CDS: -5.08 Total: 21.02 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.95 -10.27 -41.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602437579.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.767 kcal (2) G-P(sol) polarization free energy of solvation -30.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds