Wall clock time and date at job start Tue Mar 31 2020 06:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47247 * 2 1 4 4 N 1.46899 * 109.47234 * 119.99799 * 2 1 3 5 5 C 1.46851 * 110.99687 * 179.97438 * 4 2 1 6 6 C 1.53044 * 109.51926 * 185.84296 * 5 4 2 7 7 C 1.53119 * 109.27731 * 300.81888 * 6 5 4 8 8 N 1.46899 * 109.51985 * 177.56042 * 7 6 5 9 9 C 1.46892 * 111.00142 * 298.95708 * 8 7 6 10 10 C 1.46903 * 110.99785 * 175.00101 * 8 7 6 11 11 C 1.53002 * 109.47068 * 199.85573 * 10 8 7 12 12 H 1.08997 * 109.47002 * 305.17527 * 11 10 8 13 13 C 1.53003 * 109.46997 * 185.17832 * 11 10 8 14 14 C 1.52999 * 109.47384 * 65.17657 * 11 10 8 15 15 C 1.50698 * 109.47160 * 185.00132 * 14 11 10 16 16 H 1.08000 * 120.00005 * 359.97438 * 15 14 11 17 17 C 1.37877 * 119.99747 * 180.02562 * 15 14 11 18 18 N 1.31512 * 120.00222 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99923 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47079 * 59.99397 * 19 17 15 21 21 H 1.48498 * 109.46959 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46775 * 299.99423 * 19 17 15 23 23 C 1.53117 * 109.15896 * 57.65828 * 7 6 5 24 24 C 1.46840 * 111.00242 * 304.21172 * 4 2 1 25 25 H 1.09001 * 109.47143 * 299.99892 * 1 2 3 26 26 H 1.09003 * 109.47341 * 59.99682 * 1 2 3 27 27 H 1.08997 * 109.47371 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47143 * 240.00108 * 2 1 3 29 29 H 1.08997 * 109.47764 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47210 * 300.00398 * 3 2 1 31 31 H 1.09001 * 109.46961 * 59.99997 * 3 2 1 32 32 H 1.09001 * 109.46430 * 65.83017 * 5 4 2 33 33 H 1.09003 * 109.46282 * 305.85535 * 5 4 2 34 34 H 1.08998 * 109.49641 * 180.88257 * 6 5 4 35 35 H 1.08997 * 109.50499 * 60.76354 * 6 5 4 36 36 H 1.08997 * 109.52586 * 297.69050 * 7 6 5 37 37 H 1.09007 * 109.47569 * 296.21879 * 9 8 7 38 38 H 1.09003 * 109.47528 * 56.22015 * 9 8 7 39 39 H 1.09009 * 109.47218 * 176.22039 * 9 8 7 40 40 H 1.09000 * 109.46638 * 79.85735 * 10 8 7 41 41 H 1.08993 * 109.47366 * 319.85654 * 10 8 7 42 42 H 1.09002 * 109.47349 * 54.21715 * 13 11 10 43 43 H 1.08998 * 109.47187 * 174.22162 * 13 11 10 44 44 H 1.09002 * 109.47111 * 294.22152 * 13 11 10 45 45 H 1.09003 * 109.46722 * 305.00298 * 14 11 10 46 46 H 1.09003 * 109.46900 * 64.99447 * 14 11 10 47 47 H 0.96995 * 120.00366 * 180.02562 * 18 17 15 48 48 H 1.09000 * 109.50407 * 62.28380 * 23 7 6 49 49 H 1.09001 * 109.50485 * 182.40231 * 23 7 6 50 50 H 1.09000 * 109.45851 * 294.17318 * 24 4 2 51 51 H 1.09000 * 109.46406 * 54.15428 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 3.4876 -0.7125 1.2330 6 6 3.9605 -1.5637 2.4137 7 6 3.4097 -0.9737 3.7149 8 7 3.8119 -1.8198 4.8464 9 6 3.2731 -3.1790 4.7051 10 6 3.4016 -1.2209 6.1235 11 6 4.2302 -1.8244 7.2593 12 1 4.1404 -2.9105 7.2371 13 6 3.7165 -1.2977 8.6009 14 6 5.6982 -1.4303 7.0850 15 6 6.5322 -2.1237 8.1312 16 1 6.0621 -2.7796 8.8491 17 6 7.8952 -1.9200 8.1727 18 7 8.4675 -1.1210 7.2989 19 14 8.9291 -2.7801 9.4692 20 1 8.7905 -4.2508 9.3172 21 1 10.3539 -2.3974 9.3000 22 1 8.4647 -2.3761 10.8206 23 6 1.8816 -0.9192 3.6346 24 6 1.4684 -0.0872 2.4185 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.8623 0.3049 1.3456 33 1 3.8663 -1.1381 0.3037 34 1 5.0500 -1.5655 2.4475 35 1 3.5978 -2.5846 2.2947 36 1 3.8041 0.0327 3.8542 37 1 2.1841 -3.1434 4.7376 38 1 3.5945 -3.6002 3.7525 39 1 3.6408 -3.8022 5.5204 40 1 2.3449 -1.4239 6.2970 41 1 3.5637 -0.1436 6.0883 42 1 2.6462 -1.4882 8.6803 43 1 4.2371 -1.8042 9.4135 44 1 3.9002 -0.2251 8.6644 45 1 6.0388 -1.7275 6.0931 46 1 5.8002 -0.3507 7.1957 47 1 9.4264 -0.9779 7.3279 48 1 1.4861 -1.9301 3.5348 49 1 1.4856 -0.4608 4.5407 50 1 1.8522 0.9274 2.5257 51 1 0.3809 -0.0588 2.3501 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602437599.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:02 Heat of formation + Delta-G solvation = -9.548406 kcal Electronic energy + Delta-G solvation = -23754.883995 eV Core-core repulsion = 20688.468925 eV Total energy + Delta-G solvation = -3066.415071 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.94269 -37.73437 -35.07771 -33.11190 -31.84612 -30.95155 -29.34527 -27.49514 -27.08006 -26.56286 -24.88034 -23.31696 -22.99540 -21.82520 -20.12547 -18.94154 -18.68615 -16.47129 -16.24556 -15.52059 -15.18995 -14.86606 -14.58135 -14.38917 -14.10664 -13.85624 -13.57822 -13.49163 -13.01630 -12.82319 -12.57480 -12.30776 -12.15341 -11.90265 -11.78532 -11.59881 -11.42948 -11.36299 -11.27620 -11.11215 -10.98272 -10.81323 -10.75800 -10.72339 -10.37251 -10.33241 -10.23805 -9.91420 -9.57226 -8.97836 -8.80476 -8.35648 -8.19083 -7.65371 -5.84263 -3.84388 3.40542 3.44855 3.47249 3.76810 4.31576 4.57362 4.61738 4.82074 4.82877 4.95095 5.08209 5.14504 5.26290 5.29853 5.36437 5.49386 5.50529 5.51852 5.56637 5.58359 5.67278 5.69260 5.74673 5.78086 5.80087 5.90322 5.96242 5.98669 6.02439 6.10831 6.12070 6.16732 6.27726 6.34320 6.40239 6.45088 6.52614 6.60855 7.02055 7.04612 7.05383 7.11337 7.37659 7.60728 7.66166 7.89971 8.13080 8.26624 8.62582 9.23528 9.77407 11.26900 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.028595 B = 0.003393 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.961354 B = 8249.732101 C = 8685.202989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.076 3.924 3 C -0.188 4.188 4 N -0.532 5.532 5 C 0.056 3.944 6 C -0.109 4.109 7 C 0.087 3.913 8 N -0.521 5.521 9 C 0.023 3.977 10 C 0.066 3.934 11 C -0.083 4.083 12 H 0.055 0.945 13 C -0.132 4.132 14 C 0.037 3.963 15 C -0.512 4.512 16 H 0.051 0.949 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.885 3.115 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.279 1.279 23 C -0.150 4.150 24 C 0.056 3.944 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.019 0.981 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.019 0.981 41 H 0.063 0.937 42 H 0.027 0.973 43 H 0.060 0.940 44 H 0.045 0.955 45 H 0.033 0.967 46 H 0.007 0.993 47 H 0.258 0.742 48 H 0.072 0.928 49 H 0.063 0.937 50 H 0.034 0.966 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.026 2.561 -14.144 21.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.033 4.033 3 C -0.247 4.247 4 N -0.256 5.256 5 C -0.072 4.072 6 C -0.147 4.147 7 C -0.023 4.023 8 N -0.243 5.243 9 C -0.125 4.125 10 C -0.062 4.062 11 C -0.102 4.102 12 H 0.073 0.927 13 C -0.189 4.189 14 C 0.000 4.000 15 C -0.551 4.551 16 H 0.069 0.931 17 C -0.144 4.144 18 N -0.536 5.536 19 Si 0.713 3.287 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.205 1.205 23 C -0.189 4.189 24 C -0.073 4.073 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.038 0.962 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.038 0.962 41 H 0.081 0.919 42 H 0.046 0.954 43 H 0.079 0.921 44 H 0.064 0.936 45 H 0.051 0.949 46 H 0.025 0.975 47 H 0.067 0.933 48 H 0.091 0.909 49 H 0.082 0.918 50 H 0.052 0.948 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.482 2.103 -14.199 21.113 hybrid contribution 0.095 0.532 0.797 0.963 sum -15.387 2.636 -13.403 20.575 Atomic orbital electron populations 1.21910 0.94560 1.02378 1.01595 1.21685 0.95539 0.92360 0.93698 1.22496 1.01812 0.98217 1.02195 1.62203 1.08364 1.53347 1.01693 1.22108 0.86969 0.98940 0.99195 1.21671 1.01169 0.99615 0.92290 1.21773 0.91940 0.97347 0.91197 1.62077 1.58942 1.01884 1.01360 1.22446 0.96471 0.91115 1.02454 1.22248 0.95706 0.98747 0.89464 1.21206 0.98786 0.98871 0.91302 0.92680 1.21698 0.97658 1.00866 0.98718 1.19028 0.87662 0.95754 0.97551 1.21295 0.92163 1.26924 1.14675 0.93122 1.24984 0.98068 0.95532 0.95851 1.69962 1.10384 1.37390 1.35832 0.86784 0.79422 0.80104 0.82385 1.20429 1.21475 1.20489 1.22317 0.98532 1.01145 0.96936 1.22087 0.99643 0.95910 0.89639 0.92471 0.92422 0.91870 0.90090 0.92233 0.92280 0.92436 0.94524 0.90882 0.90394 0.91006 0.90627 0.96212 0.91654 0.91208 0.96250 0.91886 0.95433 0.92142 0.93615 0.94900 0.97487 0.93271 0.90900 0.91790 0.94827 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.84 37.15 0.33 -0.81 16 2 C 0.08 0.67 3.02 -67.72 -0.20 0.46 16 3 C -0.19 -1.58 8.51 37.16 0.32 -1.26 16 4 N -0.53 -5.64 4.68 -226.69 -1.06 -6.70 16 5 C 0.06 0.62 4.89 -3.83 -0.02 0.61 16 6 C -0.11 -1.43 5.24 -26.65 -0.14 -1.57 16 7 C 0.09 1.23 2.26 -67.59 -0.15 1.08 16 8 N -0.52 -8.79 4.06 -234.74 -0.95 -9.75 16 9 C 0.02 0.35 8.59 60.06 0.52 0.87 16 10 C 0.07 1.16 3.56 -3.82 -0.01 1.15 16 11 C -0.08 -1.72 2.39 -90.62 -0.22 -1.94 16 12 H 0.05 1.18 6.78 -51.93 -0.35 0.82 16 13 C -0.13 -2.53 8.91 37.16 0.33 -2.20 16 14 C 0.04 0.97 4.39 -27.88 -0.12 0.85 16 15 C -0.51 -14.65 8.48 -34.44 -0.29 -14.94 16 16 H 0.05 1.41 7.06 -52.49 -0.37 1.04 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16 19 Si 0.88 22.15 29.54 -169.99 -5.02 17.13 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 C -0.15 -1.84 4.73 -26.65 -0.13 -1.96 16 24 C 0.06 0.60 4.68 -3.84 -0.02 0.58 16 25 H 0.06 0.45 6.22 -51.93 -0.32 0.13 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.53 6.54 -51.93 -0.34 0.19 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.51 6.63 -51.93 -0.34 0.17 16 32 H 0.04 0.42 6.63 -51.93 -0.34 0.07 16 33 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 0.95 6.23 -51.93 -0.32 0.62 16 36 H 0.08 1.17 7.95 -51.93 -0.41 0.76 16 37 H 0.02 0.27 6.39 -51.93 -0.33 -0.06 16 38 H 0.06 0.92 6.09 -51.93 -0.32 0.60 16 39 H 0.07 1.14 6.80 -51.92 -0.35 0.78 16 40 H 0.02 0.31 7.40 -51.93 -0.38 -0.07 16 41 H 0.06 1.14 7.81 -51.93 -0.41 0.73 16 42 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 1.23 7.13 -51.93 -0.37 0.86 16 44 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.03 0.93 7.63 -51.93 -0.40 0.54 16 46 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 47 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 48 H 0.07 0.93 6.35 -51.93 -0.33 0.60 16 49 H 0.06 0.80 7.14 -51.93 -0.37 0.43 16 50 H 0.03 0.37 6.71 -51.93 -0.35 0.02 16 51 H 0.07 0.73 5.90 -51.93 -0.31 0.43 16 LS Contribution 367.79 15.07 5.54 5.54 Total: -1.00 -30.05 367.79 -10.33 -40.38 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -9.66 Total: -2.27 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: 0.09 Total: -17.55 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: -1.28 Total: -43.23 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.05 -10.33 -40.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602437599.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.830 kcal (2) G-P(sol) polarization free energy of solvation -30.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds