Wall clock time and date at job start Tue Mar 31 2020 05:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47002 * 2 1 4 4 N 1.46899 * 109.47346 * 179.97438 * 3 2 1 5 5 C 1.46837 * 111.00391 * 170.00284 * 4 3 2 6 6 C 1.53037 * 109.52749 * 185.84203 * 5 4 3 7 7 C 1.53114 * 109.27579 * 300.81942 * 6 5 4 8 8 N 1.46899 * 109.52613 * 177.55545 * 7 6 5 9 9 C 1.46910 * 110.99840 * 56.04515 * 8 7 6 10 10 C 1.46898 * 111.00676 * 179.97438 * 8 7 6 11 11 C 1.52992 * 109.47537 * 164.08782 * 10 8 7 12 12 H 1.08999 * 109.46962 * 55.11020 * 11 10 8 13 13 C 1.53001 * 109.47256 * 175.10992 * 11 10 8 14 14 C 1.52994 * 109.47563 * 295.11273 * 11 10 8 15 15 C 1.50694 * 109.47836 * 175.00095 * 14 11 10 16 16 H 1.07999 * 119.99638 * 359.97438 * 15 14 11 17 17 C 1.37876 * 120.00466 * 179.97438 * 15 14 11 18 18 N 1.31516 * 120.00150 * 179.71942 * 17 15 14 19 19 Si 1.86797 * 119.99771 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47187 * 269.72435 * 19 17 15 21 21 H 1.48506 * 109.47081 * 29.72830 * 19 17 15 22 22 H 1.48505 * 109.46884 * 149.72211 * 19 17 15 23 23 C 1.53123 * 109.16532 * 57.65236 * 7 6 5 24 24 C 1.46852 * 110.99657 * 294.21497 * 4 3 2 25 25 H 1.09004 * 109.47133 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47272 * 299.99746 * 1 2 3 27 27 H 1.09003 * 109.46859 * 60.00281 * 1 2 3 28 28 H 1.09002 * 109.47016 * 239.99944 * 2 1 3 29 29 H 1.09003 * 109.46859 * 119.99719 * 2 1 3 30 30 H 1.09011 * 109.46912 * 59.99657 * 3 2 1 31 31 H 1.08996 * 109.47489 * 300.00115 * 3 2 1 32 32 H 1.09005 * 109.46566 * 65.82328 * 5 4 3 33 33 H 1.09009 * 109.45276 * 305.84912 * 5 4 3 34 34 H 1.08994 * 109.50901 * 180.87731 * 6 5 4 35 35 H 1.09003 * 109.49989 * 60.75712 * 6 5 4 36 36 H 1.08996 * 109.52580 * 297.68392 * 7 6 5 37 37 H 1.08999 * 109.46979 * 178.02949 * 9 8 7 38 38 H 1.09000 * 109.46755 * 298.02960 * 9 8 7 39 39 H 1.09002 * 109.46704 * 58.02633 * 9 8 7 40 40 H 1.08999 * 109.46790 * 44.08428 * 10 8 7 41 41 H 1.09008 * 109.47184 * 284.09112 * 10 8 7 42 42 H 1.09005 * 109.47279 * 296.45215 * 13 11 10 43 43 H 1.08998 * 109.47307 * 56.45299 * 13 11 10 44 44 H 1.08994 * 109.47297 * 176.45476 * 13 11 10 45 45 H 1.08998 * 109.47005 * 54.99362 * 14 11 10 46 46 H 1.09000 * 109.46813 * 295.00268 * 14 11 10 47 47 H 0.96997 * 119.99878 * 180.27173 * 18 17 15 48 48 H 1.09002 * 109.50236 * 62.28098 * 23 7 6 49 49 H 1.08995 * 109.50724 * 182.40446 * 23 7 6 50 50 H 1.09003 * 109.46358 * 294.16738 * 24 4 3 51 51 H 1.08997 * 109.46783 * 54.15490 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0353 2.7926 -0.2373 6 6 5.5583 2.7309 -0.3749 7 6 6.1584 2.1476 0.9073 8 7 7.6153 2.0316 0.7589 9 6 8.2145 3.3284 0.4163 10 6 8.2256 1.4746 1.9735 11 6 9.6459 1.0007 1.6594 12 1 10.2158 1.8227 1.2262 13 6 10.3245 0.5334 2.9486 14 6 9.5880 -0.1598 0.6641 15 6 10.9875 -0.5461 0.2606 16 1 11.8338 -0.0165 0.6725 17 6 11.1877 -1.5756 -0.6344 18 7 12.4090 -1.9090 -0.9908 19 14 9.7240 -2.4920 -1.3464 20 1 9.3951 -3.6506 -0.4776 21 1 8.5550 -1.5788 -1.4174 22 1 10.0582 -2.9751 -2.7103 23 6 5.5577 0.7617 1.1583 24 6 4.0347 0.8804 1.2513 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9563 0.8901 31 1 1.6767 1.9563 -0.8899 32 1 3.7722 3.4380 0.6008 33 1 3.6039 3.1940 -1.1544 34 1 5.9501 3.7352 -0.5360 35 1 5.8218 2.0967 -1.2213 36 1 5.9290 2.8027 1.7477 37 1 9.2970 3.2214 0.3468 38 1 7.8208 3.6689 -0.5413 39 1 7.9703 4.0570 1.1894 40 1 7.6307 0.6318 2.3253 41 1 8.2613 2.2420 2.7469 42 1 10.4226 1.3757 3.6335 43 1 9.7214 -0.2456 3.4150 44 1 11.3129 0.1373 2.7160 45 1 9.0267 0.1464 -0.2187 46 1 9.0954 -1.0135 1.1297 47 1 12.5496 -2.6306 -1.6235 48 1 5.8212 0.0965 0.3359 49 1 5.9491 0.3591 2.0925 50 1 3.7716 1.5348 2.0824 51 1 3.6030 -0.1068 1.4156 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602448553.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:38 Heat of formation + Delta-G solvation = -13.059314 kcal Electronic energy + Delta-G solvation = -23659.442202 eV Core-core repulsion = 20592.874887 eV Total energy + Delta-G solvation = -3066.567315 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.64725 -37.54809 -35.11464 -33.67774 -32.02888 -31.20084 -30.64279 -27.67039 -26.77315 -26.24171 -24.23982 -23.02784 -22.53298 -21.50597 -20.78598 -19.56063 -18.78584 -16.64954 -16.45702 -15.69229 -15.31732 -14.81471 -14.66625 -14.53492 -14.20808 -14.07900 -13.56946 -13.34454 -13.12081 -12.84909 -12.51649 -12.50863 -12.39241 -12.19844 -11.96482 -11.67863 -11.52748 -11.30137 -11.25767 -11.11349 -11.04820 -10.91302 -10.89268 -10.75836 -10.45606 -10.20682 -10.06805 -9.59182 -9.56862 -9.30568 -8.87571 -8.43697 -8.37888 -7.87005 -5.89598 -3.84754 3.43088 3.50466 3.59955 3.71773 4.14251 4.59457 4.60986 4.77779 4.84274 4.84689 5.09123 5.11711 5.19461 5.25826 5.31825 5.39250 5.44947 5.45867 5.47626 5.53263 5.59337 5.60487 5.69059 5.70981 5.76957 5.79823 5.87955 5.94633 5.96874 6.03647 6.06462 6.10635 6.22803 6.24054 6.31177 6.39070 6.45351 6.55173 6.89577 6.98750 6.99185 7.04876 7.19824 7.45801 7.48377 7.60382 7.78294 7.99801 8.70923 9.16555 9.75166 11.24125 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.016252 B = 0.004295 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.444203 B = 6518.043918 C = 7465.223172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C 0.056 3.944 4 N -0.538 5.538 5 C 0.061 3.939 6 C -0.112 4.112 7 C 0.088 3.912 8 N -0.527 5.527 9 C 0.024 3.976 10 C 0.057 3.943 11 C -0.073 4.073 12 H 0.061 0.939 13 C -0.136 4.136 14 C 0.000 4.000 15 C -0.510 4.510 16 H 0.069 0.931 17 C 0.063 3.937 18 N -0.911 5.911 19 Si 0.876 3.124 20 H -0.281 1.281 21 H -0.259 1.259 22 H -0.292 1.292 23 C -0.113 4.113 24 C 0.058 3.942 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.029 0.971 31 H 0.072 0.928 32 H 0.028 0.972 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.028 0.972 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.015 0.985 40 H 0.071 0.929 41 H 0.019 0.981 42 H 0.029 0.971 43 H 0.042 0.958 44 H 0.070 0.930 45 H 0.032 0.968 46 H 0.003 0.997 47 H 0.260 0.740 48 H 0.084 0.916 49 H 0.069 0.931 50 H 0.028 0.972 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.756 9.509 4.466 24.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.071 4.071 4 N -0.263 5.263 5 C -0.068 4.068 6 C -0.150 4.150 7 C -0.021 4.021 8 N -0.251 5.251 9 C -0.124 4.124 10 C -0.070 4.070 11 C -0.092 4.092 12 H 0.079 0.921 13 C -0.194 4.194 14 C -0.038 4.038 15 C -0.548 4.548 16 H 0.087 0.913 17 C -0.136 4.136 18 N -0.551 5.551 19 Si 0.704 3.296 20 H -0.207 1.207 21 H -0.184 1.184 22 H -0.218 1.218 23 C -0.151 4.151 24 C -0.071 4.071 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.046 0.954 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.033 0.967 40 H 0.089 0.911 41 H 0.037 0.963 42 H 0.049 0.951 43 H 0.061 0.939 44 H 0.089 0.911 45 H 0.051 0.949 46 H 0.021 0.979 47 H 0.069 0.931 48 H 0.103 0.897 49 H 0.087 0.913 50 H 0.046 0.954 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.402 8.780 3.585 23.409 hybrid contribution -1.042 0.514 0.933 1.490 sum -22.443 9.294 4.518 24.708 Atomic orbital electron populations 1.21738 0.95774 1.01748 1.01584 1.21564 0.95170 0.96464 1.02941 1.22123 0.87350 0.97228 1.00444 1.61925 1.06899 1.22091 1.35360 1.22056 0.95793 0.88747 1.00164 1.21697 0.93164 1.01171 0.98919 1.21606 0.88313 0.96045 0.96097 1.61944 1.02253 1.24814 1.36041 1.22429 1.01174 0.89162 0.99623 1.22380 0.97507 0.97924 0.89223 1.21020 0.92041 0.99659 0.96481 0.92079 1.21735 1.02187 0.99104 0.96345 1.19508 0.97215 0.92274 0.94753 1.21240 0.92073 1.16539 1.24980 0.91290 1.25008 0.95359 0.97001 0.96272 1.69929 1.20274 1.30392 1.34511 0.86822 0.84293 0.80346 0.78180 1.20712 1.18361 1.21814 1.21724 0.92950 0.97368 1.03084 1.22139 0.95782 0.99658 0.89482 0.92537 0.93016 0.92736 0.90952 0.91902 0.95286 0.90958 0.95415 0.90775 0.91515 0.89832 0.95409 0.90613 0.91599 0.96697 0.91075 0.96262 0.95150 0.93881 0.91124 0.94933 0.97884 0.93058 0.89704 0.91253 0.95424 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.12 -1.07 5.86 -26.73 -0.16 -1.22 16 3 C 0.06 0.52 4.96 -3.83 -0.02 0.50 16 4 N -0.54 -6.05 4.66 -234.66 -1.09 -7.14 16 5 C 0.06 0.65 5.46 -3.84 -0.02 0.63 16 6 C -0.11 -1.36 4.93 -26.65 -0.13 -1.50 16 7 C 0.09 1.20 2.01 -67.59 -0.14 1.06 16 8 N -0.53 -8.47 3.96 -234.74 -0.93 -9.40 16 9 C 0.02 0.35 8.89 60.07 0.53 0.88 16 10 C 0.06 0.95 4.22 -3.83 -0.02 0.93 16 11 C -0.07 -1.46 2.35 -90.63 -0.21 -1.67 16 12 H 0.06 1.27 6.50 -51.93 -0.34 0.93 16 13 C -0.14 -2.55 9.06 37.16 0.34 -2.22 16 14 C 0.00 0.00 3.46 -27.89 -0.10 -0.10 16 15 C -0.51 -14.69 8.91 -34.44 -0.31 -15.00 16 16 H 0.07 2.13 7.31 -52.49 -0.38 1.74 16 17 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 18 N -0.91 -28.80 13.96 55.43 0.77 -28.02 16 19 Si 0.88 22.61 27.47 -169.99 -4.67 17.94 16 20 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 21 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 22 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 23 C -0.11 -1.53 5.13 -26.64 -0.14 -1.67 16 24 C 0.06 0.65 5.29 -3.83 -0.02 0.63 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.56 6.43 -51.93 -0.33 0.22 16 30 H 0.03 0.26 8.12 -51.92 -0.42 -0.16 16 31 H 0.07 0.62 7.99 -51.93 -0.41 0.21 16 32 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.71 8.02 -51.92 -0.42 0.29 16 34 H 0.07 0.75 6.55 -51.93 -0.34 0.41 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 1.19 6.43 -51.93 -0.33 0.86 16 38 H 0.07 0.87 6.41 -51.93 -0.33 0.53 16 39 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.07 1.17 5.69 -51.93 -0.30 0.88 16 41 H 0.02 0.30 8.05 -51.92 -0.42 -0.12 16 42 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.07 1.49 6.86 -51.93 -0.36 1.14 16 45 H 0.03 0.82 6.67 -51.93 -0.35 0.48 16 46 H 0.00 0.07 7.57 -51.93 -0.39 -0.32 16 47 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 48 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 49 H 0.07 0.93 6.24 -51.93 -0.32 0.60 16 50 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 51 H 0.08 0.84 6.21 -51.93 -0.32 0.52 16 LS Contribution 373.77 15.07 5.63 5.63 Total: -1.00 -30.96 373.77 -10.41 -41.37 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -10.01 Total: -2.76 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -0.11 Total: -17.62 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: -1.25 Total: -44.56 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.67 Total: 17.94 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.96 -10.41 -41.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602448553.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.312 kcal (2) G-P(sol) polarization free energy of solvation -30.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds