Wall clock time and date at job start Tue Mar 31 2020 05:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47147 * 2 1 4 4 N 1.46896 * 109.46919 * 180.02562 * 3 2 1 5 5 C 1.46849 * 110.99960 * 170.00217 * 4 3 2 6 6 C 1.53040 * 109.52438 * 185.84183 * 5 4 3 7 7 C 1.53119 * 109.27593 * 300.81846 * 6 5 4 8 8 N 1.46904 * 109.52141 * 177.55898 * 7 6 5 9 9 C 1.46898 * 110.99973 * 299.08042 * 8 7 6 10 10 C 1.46901 * 110.99868 * 175.12883 * 8 7 6 11 11 C 1.53000 * 109.47023 * 199.77327 * 10 8 7 12 12 H 1.09000 * 109.46917 * 305.25483 * 11 10 8 13 13 C 1.52999 * 109.47259 * 185.25279 * 11 10 8 14 14 C 1.53000 * 109.46906 * 65.25003 * 11 10 8 15 15 C 1.50708 * 109.46845 * 184.99881 * 14 11 10 16 16 H 1.07997 * 120.00241 * 0.02562 * 15 14 11 17 17 C 1.37879 * 119.99849 * 180.02562 * 15 14 11 18 18 N 1.31517 * 120.00213 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99984 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46935 * 60.00104 * 19 17 15 21 21 H 1.48496 * 109.47236 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47221 * 300.00164 * 19 17 15 23 23 C 1.53123 * 109.21333 * 57.62483 * 7 6 5 24 24 C 1.46842 * 111.00217 * 294.21277 * 4 3 2 25 25 H 1.08998 * 109.46943 * 299.99694 * 1 2 3 26 26 H 1.09000 * 109.47094 * 59.99307 * 1 2 3 27 27 H 1.09001 * 109.47395 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46904 * 240.00189 * 2 1 3 29 29 H 1.08998 * 109.47570 * 120.00485 * 2 1 3 30 30 H 1.08998 * 109.46950 * 60.00310 * 3 2 1 31 31 H 1.09000 * 109.46951 * 300.00241 * 3 2 1 32 32 H 1.08995 * 109.46237 * 65.82128 * 5 4 3 33 33 H 1.09000 * 109.45255 * 305.84725 * 5 4 3 34 34 H 1.08995 * 109.50246 * 180.88313 * 6 5 4 35 35 H 1.08998 * 109.50466 * 60.76101 * 6 5 4 36 36 H 1.08998 * 109.52748 * 297.68963 * 7 6 5 37 37 H 1.09004 * 109.46671 * 55.11927 * 9 8 7 38 38 H 1.08998 * 109.47027 * 175.11163 * 9 8 7 39 39 H 1.08995 * 109.47286 * 295.11172 * 9 8 7 40 40 H 1.09005 * 109.47012 * 319.76891 * 10 8 7 41 41 H 1.08993 * 109.47358 * 79.77280 * 10 8 7 42 42 H 1.08998 * 109.46922 * 54.93367 * 13 11 10 43 43 H 1.09002 * 109.47393 * 174.94088 * 13 11 10 44 44 H 1.09004 * 109.46958 * 294.93811 * 13 11 10 45 45 H 1.08994 * 109.47487 * 304.99774 * 14 11 10 46 46 H 1.09002 * 109.47132 * 65.00223 * 14 11 10 47 47 H 0.96994 * 120.00226 * 179.97438 * 18 17 15 48 48 H 1.08998 * 109.50350 * 62.31722 * 23 7 6 49 49 H 1.09000 * 109.50582 * 182.43204 * 23 7 6 50 50 H 1.08998 * 109.46266 * 294.17644 * 24 4 3 51 51 H 1.08999 * 109.46372 * 54.15439 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0352 2.7927 -0.2387 6 6 5.5580 2.7310 -0.3775 7 6 6.1592 2.1473 0.9040 8 7 7.6160 2.0312 0.7543 9 6 7.9612 1.1343 -0.3566 10 6 8.2398 1.5827 2.0064 11 6 9.7284 1.9357 1.9895 12 1 10.1908 1.5177 1.0953 13 6 10.4046 1.3542 3.2327 14 6 9.8918 3.4569 1.9844 15 6 11.3514 3.8049 1.8440 16 1 12.0887 3.0196 1.7658 17 6 11.7456 5.1258 1.8154 18 7 10.8478 6.0822 1.9112 19 14 13.5546 5.5572 1.6407 20 1 14.0756 4.9997 0.3666 21 1 13.7133 7.0336 1.6359 22 1 14.3132 4.9810 2.7799 23 6 5.5588 0.7615 1.1566 24 6 4.0358 0.8801 1.2493 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.7727 3.4377 0.5998 33 1 3.6030 3.1943 -1.1551 34 1 5.9497 3.7353 -0.5385 35 1 5.8208 2.0971 -1.2244 36 1 5.9304 2.8020 1.7449 37 1 7.4731 1.4800 -1.2678 38 1 9.0416 1.1339 -0.5010 39 1 7.6252 0.1235 -0.1254 40 1 7.7586 2.0779 2.8498 41 1 8.1234 0.5034 2.1041 42 1 10.2116 0.2827 3.2836 43 1 11.4793 1.5277 3.1765 44 1 10.0046 1.8382 4.1237 45 1 9.3355 3.8793 1.1477 46 1 9.5089 3.8666 2.9191 47 1 11.1251 7.0114 1.8915 48 1 5.8217 0.0957 0.3346 49 1 5.9511 0.3596 2.0908 50 1 3.7734 1.5341 2.0809 51 1 3.6041 -0.1072 1.4137 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602448554.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:40 Heat of formation + Delta-G solvation = -16.925532 kcal Electronic energy + Delta-G solvation = -23398.289193 eV Core-core repulsion = 20331.554227 eV Total energy + Delta-G solvation = -3066.734967 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.70941 -37.45029 -35.07272 -33.61467 -32.03779 -30.89080 -30.50699 -27.10422 -26.64967 -26.18644 -24.21329 -23.41360 -22.79470 -21.54389 -20.84118 -19.19230 -18.69277 -16.31605 -16.23947 -15.71197 -15.41934 -14.84524 -14.69630 -14.35863 -14.14754 -13.96203 -13.63262 -13.43546 -13.01559 -12.81907 -12.50046 -12.44693 -12.20622 -11.96313 -11.75378 -11.56532 -11.43169 -11.36264 -11.27269 -11.05219 -10.95568 -10.83072 -10.77410 -10.69800 -10.39033 -10.33971 -10.24414 -9.92681 -9.57523 -8.98153 -8.80736 -8.43272 -8.19269 -7.66425 -5.84444 -3.84576 3.40429 3.44759 3.47133 3.74081 4.30577 4.57211 4.60985 4.75811 4.84736 4.95692 5.07312 5.10829 5.19900 5.29000 5.36637 5.44703 5.49590 5.50397 5.51823 5.59803 5.66886 5.70072 5.72318 5.75878 5.80545 5.88254 5.91918 5.98531 6.02447 6.08024 6.09425 6.15907 6.26521 6.33925 6.38919 6.44710 6.51395 6.60544 6.97925 7.01125 7.04824 7.11037 7.37354 7.59817 7.65457 7.89795 8.12841 8.26377 8.62305 9.23319 9.77200 11.26726 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.032229 B = 0.003110 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.567900 B = 9001.614674 C = 9442.603472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.055 3.945 4 N -0.540 5.540 5 C 0.058 3.942 6 C -0.109 4.109 7 C 0.086 3.914 8 N -0.521 5.521 9 C 0.023 3.977 10 C 0.066 3.934 11 C -0.083 4.083 12 H 0.055 0.945 13 C -0.132 4.132 14 C 0.037 3.963 15 C -0.512 4.512 16 H 0.051 0.949 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.885 3.115 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.279 1.279 23 C -0.150 4.150 24 C 0.059 3.941 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.031 0.969 31 H 0.072 0.928 32 H 0.033 0.967 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.019 0.981 40 H 0.063 0.937 41 H 0.019 0.981 42 H 0.027 0.973 43 H 0.060 0.940 44 H 0.045 0.955 45 H 0.033 0.967 46 H 0.007 0.993 47 H 0.258 0.742 48 H 0.073 0.927 49 H 0.064 0.936 50 H 0.031 0.969 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.462 -11.828 -3.385 22.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.073 4.073 4 N -0.264 5.264 5 C -0.070 4.070 6 C -0.147 4.147 7 C -0.023 4.023 8 N -0.243 5.243 9 C -0.125 4.125 10 C -0.062 4.062 11 C -0.102 4.102 12 H 0.073 0.927 13 C -0.190 4.190 14 C 0.000 4.000 15 C -0.551 4.551 16 H 0.069 0.931 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.713 3.287 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.205 1.205 23 C -0.189 4.189 24 C -0.069 4.069 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.038 0.962 40 H 0.081 0.919 41 H 0.038 0.962 42 H 0.046 0.954 43 H 0.079 0.921 44 H 0.064 0.936 45 H 0.051 0.949 46 H 0.025 0.975 47 H 0.067 0.933 48 H 0.091 0.909 49 H 0.083 0.917 50 H 0.049 0.951 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.110 -11.443 -3.873 21.770 hybrid contribution 0.441 0.069 0.840 0.951 sum -17.669 -11.374 -3.034 21.231 Atomic orbital electron populations 1.21740 0.95757 1.01676 1.01725 1.21552 0.95211 0.96568 1.02647 1.22127 0.87457 0.97066 1.00641 1.61955 1.06840 1.22488 1.35154 1.22091 0.95959 0.88489 1.00476 1.21669 0.92833 1.02307 0.97927 1.21782 0.87609 0.94751 0.98175 1.62085 1.07144 1.49743 1.05302 1.22448 1.01959 0.93537 0.94555 1.22251 0.97141 0.95972 0.90799 1.21203 0.91200 1.00954 0.96796 0.92674 1.21701 1.01696 0.97286 0.98290 1.19034 0.95976 0.87600 0.97436 1.21297 0.93293 0.91410 1.49051 0.93113 1.24988 0.96840 0.96763 0.95868 1.69965 1.32860 0.99457 1.51294 0.86780 0.86306 0.77074 0.78508 1.20427 1.21480 1.20488 1.22317 0.94567 0.99917 1.02116 1.22051 0.95523 0.99444 0.89881 0.92919 0.92691 0.92617 0.91179 0.92033 0.95112 0.90911 0.94890 0.90778 0.90313 0.90938 0.90581 0.91636 0.91178 0.96221 0.91872 0.96238 0.95424 0.92096 0.93627 0.94889 0.97467 0.93270 0.90868 0.91694 0.95098 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.12 -0.97 5.86 -26.73 -0.16 -1.13 16 3 C 0.06 0.50 4.96 -3.82 -0.02 0.48 16 4 N -0.54 -5.85 4.66 -234.67 -1.09 -6.94 16 5 C 0.06 0.65 5.46 -3.83 -0.02 0.63 16 6 C -0.11 -1.43 5.25 -26.65 -0.14 -1.57 16 7 C 0.09 1.23 2.25 -67.59 -0.15 1.08 16 8 N -0.52 -8.80 4.07 -234.74 -0.95 -9.76 16 9 C 0.02 0.35 8.58 60.06 0.52 0.86 16 10 C 0.07 1.16 3.55 -3.82 -0.01 1.15 16 11 C -0.08 -1.72 2.39 -90.62 -0.22 -1.94 16 12 H 0.05 1.18 6.80 -51.93 -0.35 0.82 16 13 C -0.13 -2.53 8.92 37.16 0.33 -2.20 16 14 C 0.04 0.96 4.40 -27.88 -0.12 0.83 16 15 C -0.51 -14.64 8.47 -34.44 -0.29 -14.94 16 16 H 0.05 1.41 7.06 -52.49 -0.37 1.04 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 19 Si 0.88 22.15 29.54 -169.99 -5.02 17.13 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 C -0.15 -1.84 4.73 -26.64 -0.13 -1.97 16 24 C 0.06 0.65 5.29 -3.83 -0.02 0.63 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 29 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 30 H 0.03 0.28 8.12 -51.93 -0.42 -0.14 16 31 H 0.07 0.62 7.99 -51.93 -0.41 0.21 16 32 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.76 8.01 -51.93 -0.42 0.34 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 0.95 6.21 -51.93 -0.32 0.63 16 36 H 0.08 1.18 7.95 -51.93 -0.41 0.77 16 37 H 0.06 0.92 6.04 -51.93 -0.31 0.61 16 38 H 0.07 1.14 6.83 -51.93 -0.35 0.79 16 39 H 0.02 0.27 6.44 -51.93 -0.33 -0.06 16 40 H 0.06 1.14 7.81 -51.93 -0.41 0.73 16 41 H 0.02 0.31 7.38 -51.93 -0.38 -0.07 16 42 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.06 1.24 7.10 -51.93 -0.37 0.87 16 44 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.03 0.94 7.63 -51.93 -0.40 0.54 16 46 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 47 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 48 H 0.07 0.94 6.37 -51.93 -0.33 0.61 16 49 H 0.06 0.81 7.14 -51.93 -0.37 0.44 16 50 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.07 0.72 6.21 -51.93 -0.32 0.40 16 LS Contribution 375.61 15.07 5.66 5.66 Total: -1.00 -30.13 375.61 -10.82 -40.96 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -9.99 Total: -3.08 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -0.16 Total: -17.17 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: -1.31 Total: -43.50 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.13 -10.82 -40.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602448554.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.030 kcal (2) G-P(sol) polarization free energy of solvation -30.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds