Wall clock time and date at job start Tue Mar 31 2020 05:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47147 * 2 1 4 4 N 1.46896 * 109.46919 * 180.02562 * 3 2 1 5 5 C 1.46849 * 110.99960 * 170.00217 * 4 3 2 6 6 C 1.53040 * 109.52438 * 185.84183 * 5 4 3 7 7 C 1.53119 * 109.27593 * 300.81846 * 6 5 4 8 8 N 1.46904 * 109.52141 * 177.55898 * 7 6 5 9 9 C 1.46898 * 110.99973 * 299.08042 * 8 7 6 10 10 C 1.46901 * 110.99868 * 175.12883 * 8 7 6 11 11 C 1.53000 * 109.47023 * 199.77327 * 10 8 7 12 12 H 1.09000 * 109.46917 * 305.25483 * 11 10 8 13 13 C 1.52999 * 109.47259 * 185.25279 * 11 10 8 14 14 C 1.53000 * 109.46906 * 65.25003 * 11 10 8 15 15 C 1.50708 * 109.46845 * 184.99881 * 14 11 10 16 16 H 1.07997 * 120.00241 * 0.02562 * 15 14 11 17 17 C 1.37879 * 119.99849 * 180.02562 * 15 14 11 18 18 N 1.31517 * 120.00213 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99984 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46935 * 60.00104 * 19 17 15 21 21 H 1.48496 * 109.47236 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47221 * 300.00164 * 19 17 15 23 23 C 1.53123 * 109.21333 * 57.62483 * 7 6 5 24 24 C 1.46842 * 111.00217 * 294.21277 * 4 3 2 25 25 H 1.08998 * 109.46943 * 299.99694 * 1 2 3 26 26 H 1.09000 * 109.47094 * 59.99307 * 1 2 3 27 27 H 1.09001 * 109.47395 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46904 * 240.00189 * 2 1 3 29 29 H 1.08998 * 109.47570 * 120.00485 * 2 1 3 30 30 H 1.08998 * 109.46950 * 60.00310 * 3 2 1 31 31 H 1.09000 * 109.46951 * 300.00241 * 3 2 1 32 32 H 1.08995 * 109.46237 * 65.82128 * 5 4 3 33 33 H 1.09000 * 109.45255 * 305.84725 * 5 4 3 34 34 H 1.08995 * 109.50246 * 180.88313 * 6 5 4 35 35 H 1.08998 * 109.50466 * 60.76101 * 6 5 4 36 36 H 1.08998 * 109.52748 * 297.68963 * 7 6 5 37 37 H 1.09004 * 109.46671 * 55.11927 * 9 8 7 38 38 H 1.08998 * 109.47027 * 175.11163 * 9 8 7 39 39 H 1.08995 * 109.47286 * 295.11172 * 9 8 7 40 40 H 1.09005 * 109.47012 * 319.76891 * 10 8 7 41 41 H 1.08993 * 109.47358 * 79.77280 * 10 8 7 42 42 H 1.08998 * 109.46922 * 54.93367 * 13 11 10 43 43 H 1.09002 * 109.47393 * 174.94088 * 13 11 10 44 44 H 1.09004 * 109.46958 * 294.93811 * 13 11 10 45 45 H 1.08994 * 109.47487 * 304.99774 * 14 11 10 46 46 H 1.09002 * 109.47132 * 65.00223 * 14 11 10 47 47 H 0.96994 * 120.00226 * 179.97438 * 18 17 15 48 48 H 1.08998 * 109.50350 * 62.31722 * 23 7 6 49 49 H 1.09000 * 109.50582 * 182.43204 * 23 7 6 50 50 H 1.08998 * 109.46266 * 294.17644 * 24 4 3 51 51 H 1.08999 * 109.46372 * 54.15439 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0352 2.7927 -0.2387 6 6 5.5580 2.7310 -0.3775 7 6 6.1592 2.1473 0.9040 8 7 7.6160 2.0312 0.7543 9 6 7.9612 1.1343 -0.3566 10 6 8.2398 1.5827 2.0064 11 6 9.7284 1.9357 1.9895 12 1 10.1908 1.5177 1.0953 13 6 10.4046 1.3542 3.2327 14 6 9.8918 3.4569 1.9844 15 6 11.3514 3.8049 1.8440 16 1 12.0887 3.0196 1.7658 17 6 11.7456 5.1258 1.8154 18 7 10.8478 6.0822 1.9112 19 14 13.5546 5.5572 1.6407 20 1 14.0756 4.9997 0.3666 21 1 13.7133 7.0336 1.6359 22 1 14.3132 4.9810 2.7799 23 6 5.5588 0.7615 1.1566 24 6 4.0358 0.8801 1.2493 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.7727 3.4377 0.5998 33 1 3.6030 3.1943 -1.1551 34 1 5.9497 3.7353 -0.5385 35 1 5.8208 2.0971 -1.2244 36 1 5.9304 2.8020 1.7449 37 1 7.4731 1.4800 -1.2678 38 1 9.0416 1.1339 -0.5010 39 1 7.6252 0.1235 -0.1254 40 1 7.7586 2.0779 2.8498 41 1 8.1234 0.5034 2.1041 42 1 10.2116 0.2827 3.2836 43 1 11.4793 1.5277 3.1765 44 1 10.0046 1.8382 4.1237 45 1 9.3355 3.8793 1.1477 46 1 9.5089 3.8666 2.9191 47 1 11.1251 7.0114 1.8915 48 1 5.8217 0.0957 0.3346 49 1 5.9511 0.3596 2.0908 50 1 3.7734 1.5341 2.0809 51 1 3.6041 -0.1072 1.4137 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602448554.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:39 Heat of formation + Delta-G solvation = -34.590126 kcal Electronic energy + Delta-G solvation = -23399.055188 eV Core-core repulsion = 20331.554227 eV Total energy + Delta-G solvation = -3067.500961 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.76856 -38.62741 -36.50540 -34.82436 -33.90464 -31.85571 -31.56847 -29.06763 -28.01782 -27.14845 -25.51034 -24.66153 -24.24577 -22.66678 -21.61180 -20.48614 -20.19655 -18.44191 -17.29291 -16.68208 -16.58733 -16.44040 -15.73165 -15.60549 -15.50710 -14.97296 -14.81125 -14.56425 -14.35919 -14.10845 -13.86158 -13.62980 -13.27989 -13.21900 -13.11837 -12.77702 -12.74413 -12.67709 -12.60313 -12.47883 -12.23706 -12.14613 -12.11623 -11.90628 -11.74711 -11.61874 -11.43264 -11.26038 -11.24352 -10.85627 -10.84438 -10.45031 -9.29127 -8.93994 -8.09881 -6.18392 1.40194 1.43203 1.50542 2.45549 2.90325 3.07927 3.22633 3.79446 3.82558 4.03818 4.07945 4.13762 4.21437 4.27833 4.35672 4.41884 4.47016 4.47666 4.57268 4.58225 4.61403 4.68726 4.71451 4.75180 4.77947 4.82073 4.87325 4.90198 4.95694 4.97318 5.04535 5.08949 5.11386 5.22570 5.28481 5.32358 5.32763 5.38110 5.44290 5.47734 5.53174 5.68006 5.96290 6.04955 6.12707 6.15640 6.34473 6.36204 6.41102 7.00132 7.48517 9.01484 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.032229 B = 0.003110 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.567900 B = 9001.614674 C = 9442.603472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C 0.055 3.945 4 N -0.544 5.544 5 C 0.063 3.937 6 C -0.104 4.104 7 C 0.087 3.913 8 N -0.550 5.550 9 C 0.028 3.972 10 C 0.077 3.923 11 C -0.076 4.076 12 H 0.051 0.949 13 C -0.126 4.126 14 C 0.049 3.951 15 C -0.528 4.528 16 H 0.056 0.944 17 C -0.003 4.003 18 N -0.935 5.935 19 Si 0.956 3.044 20 H -0.269 1.269 21 H -0.286 1.286 22 H -0.268 1.268 23 C -0.139 4.139 24 C 0.063 3.937 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.030 0.970 31 H 0.079 0.921 32 H 0.027 0.973 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.073 0.927 38 H 0.053 0.947 39 H 0.038 0.962 40 H 0.053 0.947 41 H 0.045 0.955 42 H 0.064 0.936 43 H 0.044 0.956 44 H 0.040 0.960 45 H 0.001 0.999 46 H -0.025 1.025 47 H 0.259 0.741 48 H 0.073 0.927 49 H 0.065 0.935 50 H 0.026 0.974 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.837 -13.603 -3.706 23.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.073 4.073 4 N -0.269 5.269 5 C -0.065 4.065 6 C -0.142 4.142 7 C -0.021 4.021 8 N -0.272 5.272 9 C -0.119 4.119 10 C -0.050 4.050 11 C -0.095 4.095 12 H 0.069 0.931 13 C -0.184 4.184 14 C 0.011 3.989 15 C -0.566 4.566 16 H 0.074 0.926 17 C -0.200 4.200 18 N -0.576 5.576 19 Si 0.781 3.219 20 H -0.194 1.194 21 H -0.211 1.211 22 H -0.193 1.193 23 C -0.178 4.178 24 C -0.066 4.066 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.048 0.952 31 H 0.097 0.903 32 H 0.046 0.954 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.083 0.917 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.019 0.981 46 H -0.006 1.006 47 H 0.068 0.932 48 H 0.092 0.908 49 H 0.084 0.916 50 H 0.044 0.956 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.493 -13.239 -4.197 23.127 hybrid contribution 0.520 0.646 0.926 1.243 sum -17.973 -12.593 -3.271 22.188 Atomic orbital electron populations 1.21716 0.94647 1.02246 1.02003 1.21511 0.96132 0.95572 1.02311 1.22193 0.86155 0.97994 1.00920 1.61973 1.08066 1.21866 1.35031 1.22017 0.94543 0.88997 1.00940 1.21592 0.94201 1.01060 0.97336 1.21752 0.86349 0.95937 0.98085 1.61999 1.08870 1.50920 1.05441 1.22397 1.01009 0.94230 0.94292 1.22030 0.94702 0.97259 0.91057 1.21063 0.93974 0.96923 0.97572 0.93069 1.21623 1.00306 0.99482 0.97005 1.18828 0.94375 0.91391 0.94260 1.21717 0.94514 0.91822 1.48594 0.92575 1.25915 1.01817 0.96752 0.95484 1.70117 1.35287 0.99828 1.52343 0.85640 0.80344 0.76847 0.79031 1.19400 1.21146 1.19307 1.22188 0.95455 0.98095 1.02059 1.22027 0.94535 1.00180 0.89839 0.92765 0.92308 0.91926 0.91641 0.92176 0.95162 0.90288 0.95434 0.89483 0.92251 0.90737 0.92466 0.90856 0.92772 0.94364 0.92804 0.93659 0.91726 0.93662 0.94109 0.98084 1.00645 0.93216 0.90799 0.91603 0.95563 0.89422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.91 71.98 0.71 -0.92 16 2 C -0.12 -1.63 5.86 30.60 0.18 -1.45 16 3 C 0.05 0.89 4.96 86.31 0.43 1.32 16 4 N -0.54 -10.95 4.66 -896.35 -4.18 -15.13 16 5 C 0.06 1.38 5.46 86.33 0.47 1.85 16 6 C -0.10 -2.72 5.25 30.65 0.16 -2.56 16 7 C 0.09 2.51 2.25 45.00 0.10 2.61 16 8 N -0.55 -18.71 4.07 -896.57 -3.64 -22.35 16 9 C 0.03 0.84 8.58 127.69 1.10 1.93 16 10 C 0.08 2.69 3.55 86.30 0.31 3.00 16 11 C -0.08 -3.19 2.39 -10.79 -0.03 -3.22 16 12 H 0.05 2.18 6.80 -2.39 -0.02 2.16 16 13 C -0.13 -4.74 8.92 71.98 0.64 -4.09 16 14 C 0.05 2.64 4.40 29.85 0.13 2.77 16 15 C -0.53 -30.76 8.47 25.60 0.22 -30.55 16 16 H 0.06 3.14 7.06 -2.91 -0.02 3.12 16 17 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 18 N -0.93 -58.95 13.29 21.45 0.28 -58.67 16 19 Si 0.96 45.73 29.54 68.60 2.03 47.75 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 21 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 22 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 23 C -0.14 -3.21 4.73 30.65 0.15 -3.07 16 24 C 0.06 1.27 5.29 86.33 0.46 1.73 16 25 H 0.05 0.58 8.14 -2.39 -0.02 0.57 16 26 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.06 0.85 6.43 -2.39 -0.02 0.84 16 30 H 0.03 0.50 8.12 -2.39 -0.02 0.48 16 31 H 0.08 1.19 7.99 -2.39 -0.02 1.17 16 32 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.09 1.67 8.01 -2.39 -0.02 1.65 16 34 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.07 1.91 6.21 -2.39 -0.01 1.90 16 36 H 0.06 1.84 7.95 -2.39 -0.02 1.82 16 37 H 0.07 2.01 6.04 -2.38 -0.01 2.00 16 38 H 0.05 1.75 6.83 -2.39 -0.02 1.73 16 39 H 0.04 0.98 6.44 -2.39 -0.02 0.96 16 40 H 0.05 1.96 7.81 -2.38 -0.02 1.94 16 41 H 0.05 1.35 7.38 -2.39 -0.02 1.34 16 42 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.04 1.81 7.10 -2.39 -0.02 1.79 16 44 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.00 0.04 7.63 -2.39 -0.02 0.03 16 46 H -0.02 -1.49 8.14 -2.39 -0.02 -1.51 16 47 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 48 H 0.07 1.72 6.37 -2.39 -0.02 1.71 16 49 H 0.07 1.52 7.14 -2.39 -0.02 1.50 16 50 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 51 H 0.09 1.54 6.21 -2.39 -0.01 1.53 16 Total: -1.00 -65.67 375.61 0.82 -64.85 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.85 Total: 13.90 kcal Atomic # 6 Polarization: -35.84 SS G_CDS: 5.48 Total: -30.36 kcal Atomic # 7 Polarization: -88.61 SS G_CDS: -7.53 Total: -96.14 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -65.67 0.82 -64.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602448554.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.259 kcal (2) G-P(sol) polarization free energy of solvation -65.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds