Wall clock time and date at job start Tue Mar 31 2020 06:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09011 * 109.46884 * 2 1 4 4 C 1.52992 * 109.47257 * 120.00159 * 2 1 3 5 5 C 1.50698 * 109.47069 * 294.99782 * 4 2 1 6 6 H 1.07997 * 120.00232 * 0.02562 * 5 4 2 7 7 C 1.37889 * 120.00230 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99366 * 359.72767 * 7 5 4 9 9 Si 1.86792 * 119.99968 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.46823 * 179.72751 * 9 7 5 11 11 H 1.48503 * 109.47128 * 299.71943 * 9 7 5 12 12 H 1.48495 * 109.47637 * 59.72353 * 9 7 5 13 13 C 1.53006 * 109.47145 * 240.00461 * 2 1 3 14 14 N 1.46898 * 109.47025 * 61.94494 * 13 2 1 15 15 C 1.46838 * 111.00569 * 52.01182 * 14 13 2 16 16 C 1.53032 * 109.52628 * 185.84153 * 15 14 13 17 17 C 1.53126 * 109.27376 * 300.81792 * 16 15 14 18 18 C 1.53002 * 109.57322 * 177.59165 * 17 16 15 19 19 C 1.52998 * 109.47092 * 65.28669 * 18 17 16 20 20 N 1.46901 * 109.47257 * 179.97438 * 19 18 17 21 21 C 1.46906 * 111.00182 * 169.99698 * 20 19 18 22 22 C 1.46899 * 111.00019 * 293.95526 * 20 19 18 23 23 C 1.53116 * 109.16095 * 57.65815 * 17 16 15 24 24 C 1.46853 * 110.99552 * 176.22316 * 14 13 2 25 25 H 1.08995 * 109.47121 * 299.99811 * 1 2 3 26 26 H 1.08996 * 109.46939 * 59.99840 * 1 2 3 27 27 H 1.08999 * 109.46860 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47196 * 175.00624 * 4 2 1 29 29 H 1.08996 * 109.47636 * 55.00404 * 4 2 1 30 30 H 0.96998 * 120.00518 * 0.27602 * 8 7 5 31 31 H 1.08999 * 109.46743 * 181.94780 * 13 2 1 32 32 H 1.08999 * 109.46617 * 301.93995 * 13 2 1 33 33 H 1.09001 * 109.45909 * 305.85718 * 15 14 13 34 34 H 1.09004 * 109.46457 * 65.82002 * 15 14 13 35 35 H 1.09002 * 109.50627 * 180.88158 * 16 15 14 36 36 H 1.08995 * 109.50565 * 60.75804 * 16 15 14 37 37 H 1.08997 * 109.52120 * 297.74986 * 17 16 15 38 38 H 1.09000 * 109.47156 * 185.28460 * 18 17 16 39 39 H 1.08998 * 109.47093 * 305.28600 * 18 17 16 40 40 H 1.09000 * 109.46949 * 299.99918 * 19 18 17 41 41 H 1.09007 * 109.47435 * 59.99988 * 19 18 17 42 42 H 1.09004 * 109.46628 * 60.00395 * 21 20 19 43 43 H 1.09003 * 109.46833 * 180.02562 * 21 20 19 44 44 H 1.08998 * 109.46882 * 300.00219 * 21 20 19 45 45 H 1.08997 * 109.47402 * 59.99533 * 22 20 19 46 46 H 1.08996 * 109.47169 * 179.97438 * 22 20 19 47 47 H 1.09004 * 109.46752 * 299.99544 * 22 20 19 48 48 H 1.09004 * 109.50275 * 182.40627 * 23 17 16 49 49 H 1.08990 * 109.53935 * 62.30256 * 23 17 16 50 50 H 1.09000 * 109.45715 * 294.17443 * 24 14 13 51 51 H 1.09001 * 109.46482 * 54.15570 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 1.6414 0.0570 2.4765 6 1 1.0801 0.9741 2.3757 7 6 1.9925 -0.4023 3.7283 8 7 2.6705 -1.5224 3.8514 9 14 1.4977 0.5621 5.2496 10 1 1.9866 -0.1417 6.4625 11 1 2.0954 1.9203 5.1908 12 1 0.0181 0.6744 5.3052 13 6 2.0401 -0.7212 -1.2493 14 7 1.5891 -0.0020 -2.4482 15 6 1.9366 1.4225 -2.3693 16 6 1.3269 2.1645 -3.5608 17 6 1.8640 1.5602 -4.8612 18 6 1.2130 2.2573 -6.0575 19 6 1.6475 3.7239 -6.0916 20 7 1.0230 4.3931 -7.2406 21 6 1.2221 5.8471 -7.1752 22 6 1.5309 3.8485 -8.5069 23 6 1.5311 0.0661 -4.8962 24 6 2.1349 -0.6150 -3.6660 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1264 -0.7994 1.2055 29 1 1.6055 -1.7198 1.2951 30 1 2.9272 -2.0233 3.0614 31 1 3.1295 -0.7515 -1.2320 32 1 1.6486 -1.7383 -1.2669 33 1 1.5453 1.8409 -1.4420 34 1 3.0208 1.5335 -2.3885 35 1 1.5980 3.2191 -3.5103 36 1 0.2417 2.0655 -3.5345 37 1 2.9449 1.6938 -4.9056 38 1 1.5244 1.7647 -6.9787 39 1 0.1285 2.2017 -5.9644 40 1 1.3362 4.2166 -5.1705 41 1 2.7322 3.7795 -6.1848 42 1 2.2895 6.0681 -7.1798 43 1 0.7495 6.3177 -8.0374 44 1 0.7747 6.2342 -6.2598 45 1 1.3081 2.7829 -8.5596 46 1 1.0519 4.3612 -9.3410 47 1 2.6095 3.9973 -8.5597 48 1 1.9482 -0.3786 -5.7998 49 1 0.4493 -0.0665 -4.8913 50 1 3.2182 -0.4945 -3.6790 51 1 1.8873 -1.6764 -3.6806 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602449429.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:31 Heat of formation + Delta-G solvation = -26.881211 kcal Electronic energy + Delta-G solvation = -22979.005887 eV Core-core repulsion = 19911.839210 eV Total energy + Delta-G solvation = -3067.166677 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.46547 -37.89363 -35.95395 -33.84793 -32.06477 -30.72720 -29.70941 -27.91974 -26.49762 -26.13891 -24.45063 -23.24701 -22.79414 -21.81188 -20.71303 -19.73301 -18.86109 -16.81506 -16.01763 -15.83504 -15.29469 -15.14847 -14.84294 -14.64380 -14.31892 -13.86537 -13.69620 -13.47223 -13.14609 -13.07846 -12.84301 -12.62097 -12.19804 -12.10094 -11.96826 -11.77692 -11.63645 -11.49558 -11.35111 -11.16603 -11.04188 -10.93588 -10.71630 -10.61662 -10.36295 -10.15608 -10.10684 -10.02862 -9.58554 -9.37947 -8.69375 -8.43573 -8.27082 -7.98797 -6.29878 -3.97685 3.46480 3.48613 3.62273 3.67051 4.16143 4.54724 4.59349 4.70019 4.75665 4.86421 4.93996 5.04238 5.09278 5.22266 5.26549 5.31611 5.36587 5.45259 5.46185 5.47880 5.53913 5.56912 5.61295 5.63209 5.69085 5.75564 5.83449 5.90942 5.96824 5.99651 6.08794 6.10098 6.19144 6.22047 6.38628 6.41399 6.50329 6.62049 6.69141 6.71670 6.93470 7.09324 7.15248 7.40253 7.42256 7.47163 7.63348 8.29863 8.53032 8.95303 9.73645 11.10522 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.027868 B = 0.002809 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.489494 B = 9964.398316 C =10661.673010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.079 4.079 3 H 0.059 0.941 4 C 0.014 3.986 5 C -0.592 4.592 6 H 0.049 0.951 7 C 0.012 3.988 8 N -0.916 5.916 9 Si 1.067 2.933 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.288 1.288 13 C 0.060 3.940 14 N -0.533 5.533 15 C 0.049 3.951 16 C -0.109 4.109 17 C -0.087 4.087 18 C -0.108 4.108 19 C 0.052 3.948 20 N -0.549 5.549 21 C 0.024 3.976 22 C 0.021 3.979 23 C -0.107 4.107 24 C 0.055 3.945 25 H 0.054 0.946 26 H 0.043 0.957 27 H 0.039 0.961 28 H 0.002 0.998 29 H 0.007 0.993 30 H 0.268 0.732 31 H 0.024 0.976 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.026 0.974 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.031 0.969 42 H 0.024 0.976 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.023 0.977 48 H 0.060 0.940 49 H 0.071 0.929 50 H 0.026 0.974 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.662 9.402 -23.823 25.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.097 4.097 3 H 0.077 0.923 4 C -0.023 4.023 5 C -0.631 4.631 6 H 0.067 0.933 7 C -0.191 4.191 8 N -0.553 5.553 9 Si 0.896 3.104 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.215 1.215 13 C -0.067 4.067 14 N -0.257 5.257 15 C -0.079 4.079 16 C -0.147 4.147 17 C -0.106 4.106 18 C -0.146 4.146 19 C -0.075 4.075 20 N -0.273 5.273 21 C -0.125 4.125 22 C -0.127 4.127 23 C -0.145 4.145 24 C -0.074 4.074 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.020 0.980 29 H 0.025 0.975 30 H 0.078 0.922 31 H 0.042 0.958 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.044 0.956 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.049 0.951 42 H 0.042 0.958 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.084 0.916 47 H 0.042 0.958 48 H 0.079 0.921 49 H 0.090 0.910 50 H 0.045 0.955 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.588 9.286 -22.175 24.179 hybrid contribution 1.818 0.172 -1.701 2.495 sum -0.771 9.458 -23.876 25.692 Atomic orbital electron populations 1.21576 0.95431 1.00682 1.00229 1.21176 0.96208 0.98969 0.93391 0.92311 1.19246 0.95071 0.95643 0.92378 1.22023 1.38546 1.10239 0.92264 0.93262 1.25824 0.94785 0.97162 1.01371 1.70775 1.36351 1.14678 1.33468 0.83573 0.76075 0.75116 0.75685 1.20869 1.21557 1.21463 1.22296 0.96857 0.97966 0.89575 1.61975 1.59593 1.02226 1.01919 1.22188 0.97526 0.88870 0.99313 1.21678 1.01389 0.98295 0.93359 1.21192 0.99582 0.95177 0.94674 1.21617 1.01546 0.93693 0.97732 1.22251 0.96195 0.95454 0.93617 1.61997 1.58376 1.04198 1.02681 1.22385 0.99274 0.87992 1.02820 1.22435 0.97456 1.01162 0.91661 1.21591 1.01817 0.94392 0.96717 1.22051 0.96289 0.98673 0.90341 0.92709 0.93764 0.94163 0.97969 0.97490 0.92197 0.95762 0.91309 0.89533 0.95606 0.91934 0.90990 0.91912 0.92191 0.90915 0.90363 0.95069 0.95784 0.91457 0.91238 0.91022 0.91593 0.95816 0.92101 0.91022 0.95538 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 8.79 37.16 0.33 -2.10 16 2 C -0.08 -1.64 1.85 -90.62 -0.17 -1.81 16 3 H 0.06 1.25 6.07 -51.92 -0.32 0.93 16 4 C 0.01 0.36 3.76 -27.89 -0.10 0.26 16 5 C -0.59 -16.94 8.41 -34.44 -0.29 -17.23 16 6 H 0.05 1.39 7.06 -52.49 -0.37 1.02 16 7 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 8 N -0.92 -28.52 13.65 55.43 0.76 -27.77 16 9 Si 1.07 25.70 29.90 -169.99 -5.08 20.62 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.06 1.08 4.55 -3.82 -0.02 1.06 16 14 N -0.53 -8.07 4.08 -234.67 -0.96 -9.03 16 15 C 0.05 0.70 4.97 -3.84 -0.02 0.68 16 16 C -0.11 -1.25 5.08 -26.65 -0.14 -1.39 16 17 C -0.09 -0.87 2.25 -90.49 -0.20 -1.08 16 18 C -0.11 -0.96 4.61 -26.73 -0.12 -1.08 16 19 C 0.05 0.46 4.72 -3.82 -0.02 0.44 16 20 N -0.55 -4.81 5.02 -251.25 -1.26 -6.07 16 21 C 0.02 0.17 9.57 60.07 0.57 0.75 16 22 C 0.02 0.16 9.32 60.06 0.56 0.72 16 23 C -0.11 -1.13 5.38 -26.65 -0.14 -1.27 16 24 C 0.05 0.70 5.46 -3.83 -0.02 0.68 16 25 H 0.05 1.17 6.95 -51.93 -0.36 0.81 16 26 H 0.04 0.79 7.54 -51.93 -0.39 0.40 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.00 0.06 8.01 -51.93 -0.42 -0.36 16 29 H 0.01 0.19 8.00 -51.93 -0.42 -0.23 16 30 H 0.27 8.32 7.22 -40.82 -0.29 8.02 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.09 1.37 5.70 -51.93 -0.30 1.07 16 34 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.65 6.71 -51.93 -0.35 0.30 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.50 6.55 -51.93 -0.34 0.16 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.71 6.56 -51.93 -0.34 0.37 16 41 H 0.03 0.28 8.12 -51.93 -0.42 -0.14 16 42 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 43 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 44 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 45 H 0.07 0.51 6.47 -51.93 -0.34 0.17 16 46 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 47 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 48 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 50 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 51 H 0.07 0.89 8.12 -51.93 -0.42 0.46 16 LS Contribution 379.30 15.07 5.72 5.72 Total: -1.00 -30.52 379.30 -10.91 -41.43 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -10.20 Total: -3.77 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: 0.12 Total: -21.13 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: -1.46 Total: -42.87 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.62 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.52 -10.91 -41.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602449429.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.547 kcal (2) G-P(sol) polarization free energy of solvation -30.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds