Wall clock time and date at job start Tue Mar 31 2020 06:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46860 * 2 1 4 4 C 1.52998 * 109.47003 * 239.99950 * 2 1 3 5 5 C 1.50707 * 109.47006 * 65.00320 * 4 2 1 6 6 H 1.07996 * 119.99871 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99966 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99911 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99820 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47117 * 60.00593 * 9 7 5 11 11 H 1.48501 * 109.46906 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47310 * 300.00134 * 9 7 5 13 13 C 1.53000 * 109.46913 * 120.00378 * 2 1 3 14 14 N 1.46906 * 109.47072 * 294.99925 * 13 2 1 15 15 C 1.46853 * 110.99832 * 294.21261 * 14 13 2 16 16 C 1.53033 * 109.52262 * 174.16246 * 15 14 13 17 17 C 1.53112 * 109.27992 * 59.17361 * 16 15 14 18 18 C 1.53004 * 109.52428 * 182.43862 * 17 16 15 19 19 C 1.52995 * 109.47392 * 294.69065 * 18 17 16 20 20 N 1.46904 * 109.47445 * 179.97438 * 19 18 17 21 21 C 1.46898 * 110.99960 * 66.04167 * 20 19 18 22 22 C 1.46902 * 111.00018 * 189.99715 * 20 19 18 23 23 C 1.53120 * 109.16707 * 302.34582 * 17 16 15 24 24 C 1.46844 * 110.99887 * 170.00138 * 14 13 2 25 25 H 1.08995 * 109.47281 * 300.00077 * 1 2 3 26 26 H 1.09000 * 109.46871 * 59.99540 * 1 2 3 27 27 H 1.08999 * 109.47528 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46907 * 185.00172 * 4 2 1 29 29 H 1.09002 * 109.47546 * 305.00329 * 4 2 1 30 30 H 0.96993 * 119.99901 * 180.02562 * 8 7 5 31 31 H 1.08993 * 109.47007 * 174.99975 * 13 2 1 32 32 H 1.08996 * 109.47340 * 54.99781 * 13 2 1 33 33 H 1.09001 * 109.46125 * 294.17808 * 15 14 13 34 34 H 1.09003 * 109.46462 * 54.14202 * 15 14 13 35 35 H 1.09007 * 109.50330 * 299.23709 * 16 15 14 36 36 H 1.08999 * 109.53502 * 179.13924 * 16 15 14 37 37 H 1.08999 * 109.57341 * 62.28839 * 17 16 15 38 38 H 1.09001 * 109.46712 * 54.68506 * 18 17 16 39 39 H 1.08997 * 109.47369 * 174.68461 * 18 17 16 40 40 H 1.09009 * 109.47023 * 299.99496 * 19 18 17 41 41 H 1.08997 * 109.47357 * 59.99388 * 19 18 17 42 42 H 1.09000 * 109.47480 * 60.00298 * 21 20 19 43 43 H 1.09003 * 109.47228 * 180.02562 * 21 20 19 44 44 H 1.09007 * 109.47252 * 300.00562 * 21 20 19 45 45 H 1.09002 * 109.46936 * 59.99739 * 22 20 19 46 46 H 1.08998 * 109.46607 * 179.97438 * 22 20 19 47 47 H 1.09001 * 109.47047 * 299.99801 * 22 20 19 48 48 H 1.08996 * 109.49890 * 297.71825 * 23 17 16 49 49 H 1.08989 * 109.54077 * 177.61187 * 23 17 16 50 50 H 1.09000 * 109.46299 * 305.85220 * 24 14 13 51 51 H 1.08998 * 109.46010 * 65.83553 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0571 -2.4766 6 1 1.0808 0.9747 -2.3756 7 6 1.9933 -0.4016 -3.7283 8 7 2.6764 -1.5187 -3.8512 9 14 1.4985 0.5628 -5.2496 10 1 2.0897 1.9236 -5.1870 11 1 1.9936 -0.1371 -6.4621 12 1 0.0184 0.6684 -5.3092 13 6 2.0400 -0.7213 1.2492 14 7 1.6513 0.0373 2.4457 15 6 2.3292 1.3394 2.4864 16 6 1.7932 2.1584 3.6627 17 6 2.0394 1.3928 4.9656 18 6 1.4514 2.1787 6.1394 19 6 2.2116 3.4963 6.3030 20 7 1.6466 4.2510 7.4296 21 6 1.8799 3.5528 8.7008 22 6 2.1868 5.6165 7.4721 23 6 1.3638 0.0215 4.8783 24 6 1.9123 -0.7356 3.6666 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1263 -0.7995 -1.2055 29 1 1.6054 -1.7198 -1.2952 30 1 2.9243 -1.8412 -4.7317 31 1 3.1262 -0.7996 1.2056 32 1 1.6054 -1.7198 1.2951 33 1 3.4016 1.1869 2.6087 34 1 2.1426 1.8753 1.5557 35 1 0.7234 2.3231 3.5340 36 1 2.3071 3.1189 3.7023 37 1 3.1111 1.2620 5.1154 38 1 0.3993 2.3879 5.9458 39 1 1.5428 1.5906 7.0526 40 1 3.2638 3.2871 6.4966 41 1 2.1201 4.0843 5.3898 42 1 2.9519 3.4369 8.8604 43 1 1.4512 4.1329 9.5180 44 1 1.4093 2.5701 8.6673 45 1 1.9392 6.1341 6.5453 46 1 1.7516 6.1532 8.3151 47 1 3.2699 5.5753 7.5871 48 1 0.2873 0.1527 4.7686 49 1 1.5708 -0.5453 5.7858 50 1 1.4228 -1.7068 3.5933 51 1 2.9866 -0.8782 3.7835 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602449430.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:33 Heat of formation + Delta-G solvation = -25.106227 kcal Electronic energy + Delta-G solvation = -22886.956926 eV Core-core repulsion = 19819.867218 eV Total energy + Delta-G solvation = -3067.089708 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.37776 -37.83395 -35.80239 -33.68326 -31.97866 -30.72854 -29.69713 -27.90517 -26.86523 -26.03666 -24.47357 -23.19369 -22.79457 -21.70662 -20.67053 -19.62420 -18.72918 -16.44190 -15.96219 -15.81733 -15.26761 -15.12353 -14.85132 -14.46398 -14.38813 -14.11105 -13.72433 -13.41698 -13.08523 -12.84491 -12.70377 -12.47673 -12.19363 -12.08360 -11.99089 -11.89719 -11.65426 -11.33955 -11.25783 -11.08773 -11.01876 -10.81760 -10.74764 -10.59954 -10.33907 -10.25750 -10.12921 -10.05216 -9.50028 -9.07547 -8.90767 -8.67867 -8.29263 -7.91398 -5.94443 -3.95341 3.36469 3.40631 3.43304 3.63962 4.21699 4.51084 4.57490 4.72964 4.78100 4.89078 4.96299 5.05957 5.11486 5.25372 5.28870 5.34796 5.38802 5.41206 5.48158 5.51624 5.55087 5.59296 5.66202 5.68529 5.73545 5.79798 5.94559 5.95694 6.00717 6.03514 6.15214 6.20657 6.24252 6.28384 6.46237 6.47097 6.62778 6.70687 6.73225 6.77044 7.07893 7.21643 7.26809 7.50168 7.53160 7.73427 7.90096 8.06188 8.50499 9.10915 9.67707 11.17114 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.029013 B = 0.002744 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.843371 B =10201.060775 C =10810.225825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.081 4.081 3 H 0.055 0.945 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.061 3.939 14 N -0.533 5.533 15 C 0.052 3.948 16 C -0.109 4.109 17 C -0.087 4.087 18 C -0.108 4.108 19 C 0.052 3.948 20 N -0.549 5.549 21 C 0.021 3.979 22 C 0.024 3.976 23 C -0.108 4.108 24 C 0.055 3.945 25 H 0.042 0.958 26 H 0.052 0.948 27 H 0.038 0.962 28 H 0.011 0.989 29 H 0.015 0.985 30 H 0.260 0.740 31 H 0.026 0.974 32 H 0.067 0.933 33 H 0.026 0.974 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.031 0.969 41 H 0.078 0.922 42 H 0.023 0.977 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.023 0.977 48 H 0.071 0.929 49 H 0.060 0.940 50 H 0.071 0.929 51 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.562 8.311 23.987 25.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.099 4.099 3 H 0.074 0.926 4 C -0.011 4.011 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.066 4.066 14 N -0.258 5.258 15 C -0.076 4.076 16 C -0.147 4.147 17 C -0.106 4.106 18 C -0.146 4.146 19 C -0.075 4.075 20 N -0.272 5.272 21 C -0.127 4.127 22 C -0.125 4.125 23 C -0.145 4.145 24 C -0.073 4.073 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.030 0.970 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.044 0.956 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.049 0.951 41 H 0.096 0.904 42 H 0.042 0.958 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.085 0.915 47 H 0.042 0.958 48 H 0.090 0.910 49 H 0.078 0.922 50 H 0.089 0.911 51 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -1.491 8.313 23.764 25.220 hybrid contribution 1.673 0.199 -0.767 1.851 sum 0.181 8.511 22.997 24.522 Atomic orbital electron populations 1.21570 0.95773 1.00449 1.00101 1.21222 0.95951 0.99013 0.93749 0.92623 1.19126 0.95835 0.95571 0.90524 1.21202 1.34529 1.08232 0.90990 0.92646 1.25024 0.95384 0.95111 0.99072 1.69958 1.39122 1.21246 1.23427 0.86695 0.78916 0.80088 0.82516 1.20340 1.21407 1.20262 1.22297 0.97440 0.97187 0.89686 1.61958 1.58356 1.03588 1.01877 1.22126 0.95176 0.91045 0.99223 1.21671 1.02150 0.97510 0.93388 1.21188 0.99507 0.95220 0.94683 1.21620 1.00601 0.94548 0.97838 1.22253 0.96023 0.95342 0.93896 1.62001 1.58884 1.02728 1.03633 1.22436 0.99082 0.99776 0.91421 1.22383 0.97273 0.90023 1.02789 1.21596 1.01080 0.95017 0.96853 1.22049 0.98056 0.96944 0.90275 0.93896 0.92892 0.94288 0.97042 0.96628 0.93086 0.95568 0.91418 0.95610 0.89939 0.90974 0.91995 0.91925 0.90916 0.92208 0.95075 0.90370 0.95824 0.91611 0.91007 0.91244 0.91474 0.95797 0.91029 0.92153 0.91050 0.95608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.89 37.16 0.33 -2.08 16 2 C -0.08 -1.68 2.26 -90.62 -0.20 -1.88 16 3 H 0.06 1.17 6.22 -51.93 -0.32 0.85 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.47 8.41 -34.44 -0.29 -14.76 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 9 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.06 1.09 4.35 -3.82 -0.02 1.07 16 14 N -0.53 -8.05 4.11 -234.66 -0.96 -9.02 16 15 C 0.05 0.73 5.30 -3.83 -0.02 0.71 16 16 C -0.11 -1.24 5.08 -26.66 -0.14 -1.37 16 17 C -0.09 -0.87 2.25 -90.50 -0.20 -1.07 16 18 C -0.11 -0.96 4.61 -26.73 -0.12 -1.08 16 19 C 0.05 0.46 4.72 -3.82 -0.02 0.44 16 20 N -0.55 -4.80 5.02 -251.25 -1.26 -6.06 16 21 C 0.02 0.16 9.32 60.06 0.56 0.71 16 22 C 0.02 0.17 9.57 60.07 0.57 0.75 16 23 C -0.11 -1.14 5.38 -26.65 -0.14 -1.28 16 24 C 0.06 0.70 5.46 -3.83 -0.02 0.68 16 25 H 0.04 0.77 7.75 -51.93 -0.40 0.37 16 26 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 32 H 0.07 1.21 7.99 -51.93 -0.41 0.79 16 33 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 1.28 6.12 -51.93 -0.32 0.96 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.63 6.70 -51.93 -0.35 0.28 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.50 6.55 -51.93 -0.34 0.16 16 40 H 0.03 0.28 8.12 -51.92 -0.42 -0.14 16 41 H 0.08 0.70 6.56 -51.93 -0.34 0.36 16 42 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 43 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 44 H 0.07 0.51 6.47 -51.92 -0.34 0.17 16 45 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 46 H 0.07 0.43 8.12 -51.93 -0.42 0.00 16 47 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 48 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.06 0.55 8.14 -51.94 -0.42 0.13 16 50 H 0.07 0.90 8.02 -51.93 -0.42 0.48 16 51 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 381.78 15.07 5.75 5.75 Total: -1.00 -29.81 381.78 -10.98 -40.78 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -10.29 Total: -4.73 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 0.07 Total: -17.09 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: -1.49 Total: -41.60 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.81 -10.98 -40.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602449430.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.678 kcal (2) G-P(sol) polarization free energy of solvation -29.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds