Wall clock time and date at job start Tue Mar 31 2020 06:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46860 * 2 1 4 4 C 1.52998 * 109.47003 * 239.99950 * 2 1 3 5 5 C 1.50707 * 109.47006 * 65.00320 * 4 2 1 6 6 H 1.07996 * 119.99871 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99966 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99911 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99820 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47117 * 60.00593 * 9 7 5 11 11 H 1.48501 * 109.46906 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47310 * 300.00134 * 9 7 5 13 13 C 1.53000 * 109.46913 * 120.00378 * 2 1 3 14 14 N 1.46906 * 109.47072 * 294.99925 * 13 2 1 15 15 C 1.46853 * 110.99832 * 294.21261 * 14 13 2 16 16 C 1.53033 * 109.52262 * 174.16246 * 15 14 13 17 17 C 1.53112 * 109.27992 * 59.17361 * 16 15 14 18 18 C 1.53004 * 109.52428 * 182.43862 * 17 16 15 19 19 C 1.52995 * 109.47392 * 294.69065 * 18 17 16 20 20 N 1.46904 * 109.47445 * 179.97438 * 19 18 17 21 21 C 1.46898 * 110.99960 * 66.04167 * 20 19 18 22 22 C 1.46902 * 111.00018 * 189.99715 * 20 19 18 23 23 C 1.53120 * 109.16707 * 302.34582 * 17 16 15 24 24 C 1.46844 * 110.99887 * 170.00138 * 14 13 2 25 25 H 1.08995 * 109.47281 * 300.00077 * 1 2 3 26 26 H 1.09000 * 109.46871 * 59.99540 * 1 2 3 27 27 H 1.08999 * 109.47528 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46907 * 185.00172 * 4 2 1 29 29 H 1.09002 * 109.47546 * 305.00329 * 4 2 1 30 30 H 0.96993 * 119.99901 * 180.02562 * 8 7 5 31 31 H 1.08993 * 109.47007 * 174.99975 * 13 2 1 32 32 H 1.08996 * 109.47340 * 54.99781 * 13 2 1 33 33 H 1.09001 * 109.46125 * 294.17808 * 15 14 13 34 34 H 1.09003 * 109.46462 * 54.14202 * 15 14 13 35 35 H 1.09007 * 109.50330 * 299.23709 * 16 15 14 36 36 H 1.08999 * 109.53502 * 179.13924 * 16 15 14 37 37 H 1.08999 * 109.57341 * 62.28839 * 17 16 15 38 38 H 1.09001 * 109.46712 * 54.68506 * 18 17 16 39 39 H 1.08997 * 109.47369 * 174.68461 * 18 17 16 40 40 H 1.09009 * 109.47023 * 299.99496 * 19 18 17 41 41 H 1.08997 * 109.47357 * 59.99388 * 19 18 17 42 42 H 1.09000 * 109.47480 * 60.00298 * 21 20 19 43 43 H 1.09003 * 109.47228 * 180.02562 * 21 20 19 44 44 H 1.09007 * 109.47252 * 300.00562 * 21 20 19 45 45 H 1.09002 * 109.46936 * 59.99739 * 22 20 19 46 46 H 1.08998 * 109.46607 * 179.97438 * 22 20 19 47 47 H 1.09001 * 109.47047 * 299.99801 * 22 20 19 48 48 H 1.08996 * 109.49890 * 297.71825 * 23 17 16 49 49 H 1.08989 * 109.54077 * 177.61187 * 23 17 16 50 50 H 1.09000 * 109.46299 * 305.85220 * 24 14 13 51 51 H 1.08998 * 109.46010 * 65.83553 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0571 -2.4766 6 1 1.0808 0.9747 -2.3756 7 6 1.9933 -0.4016 -3.7283 8 7 2.6764 -1.5187 -3.8512 9 14 1.4985 0.5628 -5.2496 10 1 2.0897 1.9236 -5.1870 11 1 1.9936 -0.1371 -6.4621 12 1 0.0184 0.6684 -5.3092 13 6 2.0400 -0.7213 1.2492 14 7 1.6513 0.0373 2.4457 15 6 2.3292 1.3394 2.4864 16 6 1.7932 2.1584 3.6627 17 6 2.0394 1.3928 4.9656 18 6 1.4514 2.1787 6.1394 19 6 2.2116 3.4963 6.3030 20 7 1.6466 4.2510 7.4296 21 6 1.8799 3.5528 8.7008 22 6 2.1868 5.6165 7.4721 23 6 1.3638 0.0215 4.8783 24 6 1.9123 -0.7356 3.6666 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1263 -0.7995 -1.2055 29 1 1.6054 -1.7198 -1.2952 30 1 2.9243 -1.8412 -4.7317 31 1 3.1262 -0.7996 1.2056 32 1 1.6054 -1.7198 1.2951 33 1 3.4016 1.1869 2.6087 34 1 2.1426 1.8753 1.5557 35 1 0.7234 2.3231 3.5340 36 1 2.3071 3.1189 3.7023 37 1 3.1111 1.2620 5.1154 38 1 0.3993 2.3879 5.9458 39 1 1.5428 1.5906 7.0526 40 1 3.2638 3.2871 6.4966 41 1 2.1201 4.0843 5.3898 42 1 2.9519 3.4369 8.8604 43 1 1.4512 4.1329 9.5180 44 1 1.4093 2.5701 8.6673 45 1 1.9392 6.1341 6.5453 46 1 1.7516 6.1532 8.3151 47 1 3.2699 5.5753 7.5871 48 1 0.2873 0.1527 4.7686 49 1 1.5708 -0.5453 5.7858 50 1 1.4228 -1.7068 3.5933 51 1 2.9866 -0.8782 3.7835 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602449430.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:33 Heat of formation + Delta-G solvation = -42.293839 kcal Electronic energy + Delta-G solvation = -22887.702237 eV Core-core repulsion = 19819.867218 eV Total energy + Delta-G solvation = -3067.835019 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.41192 -38.64114 -37.18850 -35.19312 -33.80082 -31.74899 -30.70146 -28.81002 -28.45551 -27.27091 -25.77878 -24.41690 -24.10644 -22.79917 -21.44451 -20.59340 -20.39551 -18.51702 -17.04224 -16.54558 -16.50210 -16.12393 -16.00552 -15.79700 -15.61385 -15.13445 -14.93210 -14.54770 -14.37744 -14.11629 -13.88514 -13.55727 -13.32134 -13.22511 -13.09579 -12.89734 -12.74746 -12.70150 -12.60012 -12.45334 -12.28401 -12.16875 -12.06331 -11.99152 -11.85854 -11.48214 -11.43237 -11.17735 -11.10750 -10.88946 -10.74522 -10.51937 -9.29286 -9.16887 -8.16986 -6.26160 1.39924 1.42937 1.50543 2.42200 3.02053 3.03662 3.16115 3.78761 3.90310 3.94335 4.05936 4.23195 4.28723 4.29368 4.40126 4.43944 4.48932 4.52591 4.55382 4.56509 4.66324 4.69480 4.72690 4.77778 4.80775 4.87701 4.94551 4.97184 5.00896 5.01764 5.03816 5.07059 5.12822 5.18460 5.25332 5.29866 5.33325 5.38065 5.48845 5.51260 5.56416 5.62066 5.81692 5.89445 6.11502 6.12421 6.17333 6.30326 6.34446 6.89423 7.41862 8.94946 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.029013 B = 0.002744 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.843371 B =10201.060775 C =10810.225825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.071 4.071 3 H 0.053 0.947 4 C 0.033 3.967 5 C -0.528 4.528 6 H 0.060 0.940 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.267 1.267 13 C 0.072 3.928 14 N -0.535 5.535 15 C 0.051 3.949 16 C -0.102 4.102 17 C -0.081 4.081 18 C -0.098 4.098 19 C 0.055 3.945 20 N -0.563 5.563 21 C 0.021 3.979 22 C 0.023 3.977 23 C -0.101 4.101 24 C 0.052 3.948 25 H 0.064 0.936 26 H 0.036 0.964 27 H 0.035 0.965 28 H -0.017 1.017 29 H -0.010 1.010 30 H 0.262 0.738 31 H 0.015 0.985 32 H 0.066 0.934 33 H 0.022 0.978 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.030 0.970 41 H 0.074 0.926 42 H 0.024 0.976 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.025 0.975 48 H 0.068 0.932 49 H 0.081 0.919 50 H 0.073 0.927 51 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.297 9.554 25.401 27.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.090 4.090 3 H 0.071 0.929 4 C -0.005 4.005 5 C -0.566 4.566 6 H 0.078 0.922 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.192 1.192 13 C -0.056 4.056 14 N -0.259 5.259 15 C -0.077 4.077 16 C -0.139 4.139 17 C -0.100 4.100 18 C -0.135 4.135 19 C -0.073 4.073 20 N -0.287 5.287 21 C -0.127 4.127 22 C -0.125 4.125 23 C -0.139 4.139 24 C -0.076 4.076 25 H 0.083 0.917 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.001 0.999 29 H 0.008 0.992 30 H 0.070 0.930 31 H 0.033 0.967 32 H 0.085 0.915 33 H 0.041 0.959 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.048 0.952 41 H 0.092 0.908 42 H 0.043 0.957 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.087 0.913 46 H 0.094 0.906 47 H 0.043 0.957 48 H 0.086 0.914 49 H 0.099 0.901 50 H 0.092 0.908 51 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -2.233 9.568 25.201 27.049 hybrid contribution 1.931 -0.204 -1.169 2.267 sum -0.302 9.364 24.032 25.794 Atomic orbital electron populations 1.21450 0.94640 1.00330 1.00347 1.21021 0.96711 0.98362 0.92878 0.92893 1.19014 0.93905 0.94722 0.92821 1.21594 1.34427 1.08540 0.92047 0.92164 1.25965 0.95277 0.96128 1.02664 1.70098 1.40281 1.22951 1.24321 0.85560 0.78971 0.78759 0.78135 1.19253 1.20993 1.19190 1.22019 0.96529 0.97072 0.89938 1.61942 1.58383 1.03907 1.01715 1.22161 0.95122 0.90699 0.99743 1.21615 1.01714 0.97743 0.92852 1.21127 0.99607 0.94904 0.94334 1.21494 0.99960 0.94542 0.97534 1.22201 0.95920 0.95233 0.93959 1.62017 1.59258 1.03349 1.04099 1.22469 0.99245 0.99941 0.91090 1.22414 0.97395 0.89514 1.03208 1.21566 1.00682 0.95201 0.96428 1.22161 0.98300 0.97185 0.89927 0.91668 0.94443 0.94558 0.99859 0.99175 0.92951 0.96709 0.91514 0.95941 0.91712 0.91485 0.90759 0.91818 0.91590 0.91286 0.95178 0.90795 0.95732 0.90788 0.90792 0.91289 0.90573 0.95666 0.91352 0.90080 0.90830 0.95630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.35 8.89 71.98 0.64 -3.71 16 2 C -0.07 -3.00 2.26 -10.79 -0.02 -3.02 16 3 H 0.05 2.27 6.22 -2.39 -0.01 2.25 16 4 C 0.03 1.78 4.45 29.85 0.13 1.91 16 5 C -0.53 -30.39 8.41 25.60 0.22 -30.18 16 6 H 0.06 3.34 7.06 -2.91 -0.02 3.32 16 7 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 8 N -0.94 -58.01 13.29 21.45 0.28 -57.72 16 9 Si 0.96 45.06 29.54 68.60 2.03 47.08 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 13 C 0.07 2.61 4.35 86.30 0.38 2.98 16 14 N -0.53 -15.73 4.11 -896.34 -3.68 -19.42 16 15 C 0.05 1.39 5.30 86.32 0.46 1.85 16 16 C -0.10 -2.14 5.08 30.64 0.16 -1.98 16 17 C -0.08 -1.43 2.25 -10.71 -0.02 -1.46 16 18 C -0.10 -1.50 4.61 30.59 0.14 -1.36 16 19 C 0.05 0.85 4.72 86.30 0.41 1.26 16 20 N -0.56 -8.78 5.02 -948.82 -4.76 -13.55 16 21 C 0.02 0.26 9.32 127.69 1.19 1.45 16 22 C 0.02 0.30 9.57 127.69 1.22 1.52 16 23 C -0.10 -1.89 5.38 30.65 0.16 -1.72 16 24 C 0.05 1.25 5.46 86.33 0.47 1.72 16 25 H 0.06 2.26 7.75 -2.39 -0.02 2.24 16 26 H 0.04 1.56 6.95 -2.39 -0.02 1.55 16 27 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 28 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 29 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 30 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 31 H 0.01 0.56 8.12 -2.39 -0.02 0.54 16 32 H 0.07 2.40 7.99 -2.39 -0.02 2.38 16 33 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.06 2.00 6.12 -2.39 -0.01 1.98 16 35 H 0.07 1.50 8.14 -2.38 -0.02 1.49 16 36 H 0.07 1.39 6.70 -2.39 -0.02 1.37 16 37 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 0.96 6.55 -2.39 -0.02 0.94 16 40 H 0.03 0.48 8.12 -2.38 -0.02 0.46 16 41 H 0.07 1.20 6.56 -2.39 -0.02 1.19 16 42 H 0.02 0.30 8.14 -2.39 -0.02 0.28 16 43 H 0.07 0.80 8.12 -2.39 -0.02 0.78 16 44 H 0.07 0.88 6.47 -2.38 -0.02 0.87 16 45 H 0.07 0.88 8.12 -2.39 -0.02 0.86 16 46 H 0.08 0.83 8.12 -2.39 -0.02 0.81 16 47 H 0.02 0.32 8.14 -2.39 -0.02 0.30 16 48 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 49 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.07 1.74 8.02 -2.39 -0.02 1.72 16 51 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -64.12 381.78 0.69 -63.43 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 0.83 Total: 10.64 kcal Atomic # 6 Polarization: -36.46 SS G_CDS: 5.99 Total: -30.47 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -8.16 Total: -90.69 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -64.12 0.69 -63.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602449430.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.140 kcal (2) G-P(sol) polarization free energy of solvation -64.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds