Wall clock time and date at job start Tue Mar 31 2020 06:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46623 * 2 1 4 4 C 1.52993 * 109.47081 * 120.00245 * 2 1 3 5 5 C 1.50706 * 109.47341 * 294.99748 * 4 2 1 6 6 H 1.08000 * 119.99734 * 359.97438 * 5 4 2 7 7 C 1.37872 * 119.99986 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00457 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99918 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47092 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46863 * 119.99747 * 9 7 5 12 12 H 1.48495 * 109.47221 * 239.99772 * 9 7 5 13 13 C 1.52998 * 109.46917 * 240.00304 * 2 1 3 14 14 N 1.46899 * 109.47078 * 174.81007 * 13 2 1 15 15 C 1.47907 * 111.00209 * 291.97328 * 14 13 2 16 16 C 1.50791 * 108.50009 * 153.78988 * 15 14 13 17 17 C 1.53700 * 112.10391 * 92.55139 * 16 15 14 18 18 N 1.48065 * 112.46557 * 318.55480 * 17 16 15 19 19 C 1.46900 * 110.99534 * 192.19954 * 18 17 16 20 20 C 1.53001 * 109.46969 * 192.58715 * 19 18 17 21 21 C 1.52998 * 109.47366 * 312.58633 * 19 18 17 22 22 C 1.52999 * 109.47580 * 72.59082 * 19 18 17 23 23 C 1.44574 * 113.85448 * 318.31293 * 18 17 16 24 24 C 1.40017 * 110.99846 * 164.00346 * 14 13 2 25 25 H 1.09000 * 109.47077 * 55.97433 * 1 2 3 26 26 H 1.08992 * 109.47201 * 175.97443 * 1 2 3 27 27 H 1.09006 * 109.46875 * 295.97711 * 1 2 3 28 28 H 1.09003 * 109.47330 * 174.99877 * 4 2 1 29 29 H 1.08996 * 109.47658 * 54.99985 * 4 2 1 30 30 H 0.97001 * 120.00903 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.46950 * 294.81341 * 13 2 1 32 32 H 1.09004 * 109.47043 * 54.80865 * 13 2 1 33 33 H 1.09001 * 109.62896 * 273.49251 * 15 14 13 34 34 H 1.09004 * 109.62978 * 34.08619 * 15 14 13 35 35 H 1.09002 * 108.95700 * 331.87426 * 16 15 14 36 36 H 1.09009 * 108.88758 * 213.17954 * 16 15 14 37 37 H 1.08999 * 108.88214 * 197.78496 * 17 16 15 38 38 H 1.08996 * 108.88432 * 79.32255 * 17 16 15 39 39 H 1.09002 * 109.47274 * 59.74342 * 20 19 18 40 40 H 1.09005 * 109.47526 * 179.73937 * 20 19 18 41 41 H 1.08996 * 109.47262 * 299.74731 * 20 19 18 42 42 H 1.08999 * 109.46787 * 60.00091 * 21 19 18 43 43 H 1.08996 * 109.47671 * 180.02562 * 21 19 18 44 44 H 1.08998 * 109.46987 * 300.00320 * 21 19 18 45 45 H 1.09004 * 109.47318 * 59.99417 * 22 19 18 46 46 H 1.08996 * 109.47055 * 180.02562 * 22 19 18 47 47 H 1.08999 * 109.46768 * 300.00029 * 22 19 18 48 48 H 1.09007 * 109.57791 * 334.42296 * 23 18 17 49 49 H 1.09003 * 109.67855 * 214.10707 * 23 18 17 50 50 H 1.08997 * 108.95640 * 308.76850 * 24 14 13 51 51 H 1.08993 * 108.95947 * 67.42599 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 1 1.0808 0.9746 2.3757 7 6 1.9933 -0.4018 3.7282 8 7 2.6764 -1.5188 3.8511 9 14 1.4998 0.5633 5.2496 10 1 0.7423 1.7743 4.8435 11 1 0.6460 -0.2857 6.1189 12 1 2.7182 0.9680 5.9959 13 6 2.0400 -0.7212 -1.2493 14 7 3.5036 -0.6136 -1.3136 15 6 3.9220 0.7820 -1.5683 16 6 5.3066 0.9770 -1.0041 17 6 6.4003 0.7161 -2.0520 18 7 6.1068 -0.4661 -2.8938 19 6 7.2850 -0.8592 -3.6782 20 6 6.8695 -1.8660 -4.7527 21 6 7.8898 0.3779 -4.3450 22 6 8.3229 -1.4991 -2.7540 23 6 5.5760 -1.5911 -2.1571 24 6 4.0359 -1.5429 -2.2156 25 1 -0.3633 0.5750 -0.8517 26 1 -0.3633 -1.0250 -0.0721 27 1 -0.3633 0.4502 0.9239 28 1 3.1264 -0.7995 1.2055 29 1 1.6055 -1.7198 1.2951 30 1 2.9244 -1.8415 4.7316 31 1 1.7545 -1.7722 -1.2041 32 1 1.6027 -0.2638 -2.1368 33 1 3.9340 0.9705 -2.6419 34 1 3.2280 1.4670 -1.0811 35 1 5.4476 0.2928 -0.1673 36 1 5.3995 2.0014 -0.6429 37 1 7.3492 0.5577 -1.5397 38 1 6.4901 1.5925 -2.6938 39 1 6.1267 -1.4117 -5.4086 40 1 7.7429 -2.1543 -5.3379 41 1 6.4428 -2.7493 -4.2776 42 1 8.1858 1.0951 -3.5795 43 1 8.7637 0.0862 -4.9274 44 1 7.1504 0.8337 -5.0035 45 1 7.8920 -2.3805 -2.2789 46 1 9.1972 -1.7904 -3.3360 47 1 8.6189 -0.7819 -1.9884 48 1 5.9039 -1.5355 -1.1190 49 1 5.9294 -2.5212 -2.6023 50 1 3.6413 -2.5313 -1.9798 51 1 3.7282 -1.2724 -3.2256 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602454746.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:36 Heat of formation + Delta-G solvation = -1.461124 kcal Electronic energy + Delta-G solvation = -24254.741663 eV Core-core repulsion = 21188.677283 eV Total energy + Delta-G solvation = -3066.064380 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.94469 -37.72483 -34.82950 -33.04384 -32.06560 -31.48265 -28.26517 -27.44291 -27.17734 -26.67242 -25.39210 -24.28545 -22.53652 -20.91493 -20.28256 -18.76576 -18.37983 -16.56542 -16.22035 -15.59231 -14.99538 -14.96936 -14.67476 -14.37852 -13.98884 -13.75790 -13.50909 -13.09831 -12.75605 -12.50075 -12.34658 -12.21949 -11.97768 -11.93020 -11.84887 -11.60032 -11.51228 -11.33115 -11.15897 -11.07860 -10.87427 -10.77371 -10.65082 -10.59212 -10.41202 -10.22872 -10.21377 -9.98485 -9.49923 -8.98015 -8.77949 -8.20021 -8.03462 -7.52539 -5.85294 -3.85198 3.37317 3.44971 3.48601 3.85728 4.44785 4.56613 4.69390 4.80492 5.03893 5.13580 5.23045 5.37229 5.40745 5.43798 5.50323 5.50983 5.59405 5.62569 5.65709 5.72888 5.76123 5.78744 5.79571 5.89968 5.91096 5.96666 6.06588 6.11531 6.16454 6.20093 6.21963 6.26993 6.32578 6.37456 6.45568 6.50716 6.64174 6.69776 7.08603 7.14473 7.25302 7.36888 7.40226 7.75843 7.89873 8.01990 8.13819 8.26147 8.62119 9.23263 9.76768 11.25832 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.022694 B = 0.004041 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.529624 B = 6926.935534 C = 7383.914145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 H 0.056 0.944 4 C 0.037 3.963 5 C -0.510 4.510 6 H 0.052 0.948 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.883 3.117 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.286 1.286 13 C 0.072 3.928 14 N -0.542 5.542 15 C 0.075 3.925 16 C -0.122 4.122 17 C 0.063 3.937 18 N -0.539 5.539 19 C 0.105 3.895 20 C -0.137 4.137 21 C -0.141 4.141 22 C -0.180 4.180 23 C 0.060 3.940 24 C 0.085 3.915 25 H 0.027 0.973 26 H 0.042 0.958 27 H 0.064 0.936 28 H 0.032 0.968 29 H 0.007 0.993 30 H 0.256 0.744 31 H 0.064 0.936 32 H 0.016 0.984 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.032 0.968 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.056 0.944 48 H 0.054 0.946 49 H 0.071 0.929 50 H 0.065 0.935 51 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.107 1.523 -17.116 19.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.104 4.104 3 H 0.074 0.926 4 C 0.000 4.000 5 C -0.549 4.549 6 H 0.070 0.930 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.711 3.289 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.212 1.212 13 C -0.055 4.055 14 N -0.266 5.266 15 C -0.052 4.052 16 C -0.160 4.160 17 C -0.064 4.064 18 N -0.264 5.264 19 C 0.016 3.984 20 C -0.194 4.194 21 C -0.199 4.199 22 C -0.239 4.239 23 C -0.069 4.069 24 C -0.046 4.046 25 H 0.046 0.954 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.050 0.950 29 H 0.026 0.974 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.034 0.966 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.050 0.950 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.075 0.925 48 H 0.073 0.927 49 H 0.089 0.911 50 H 0.083 0.917 51 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 9.017 1.423 -16.873 19.184 hybrid contribution 0.127 0.369 0.842 0.928 sum 9.144 1.792 -16.031 18.543 Atomic orbital electron populations 1.21722 0.96668 1.00344 1.00449 1.21262 0.94016 0.99277 0.95802 0.92583 1.19018 0.97339 0.94393 0.89241 1.21376 1.34006 1.08070 0.91431 0.92997 1.24976 0.95563 0.95069 0.98805 1.69984 1.39406 1.21279 1.22871 0.86688 0.78181 0.80209 0.83803 1.19906 1.21258 1.21242 1.22160 0.85723 1.00514 0.97126 1.59011 1.10073 1.05235 1.52283 1.21673 0.95858 0.89283 0.98386 1.21473 0.94200 1.01970 0.98379 1.22443 0.97048 0.92685 0.94200 1.60987 1.30136 1.06916 1.28385 1.21041 0.88903 0.95018 0.93460 1.21880 1.01118 0.98438 0.98008 1.21931 1.00262 0.97112 1.00545 1.22515 0.99723 1.01327 1.00348 1.22002 0.94929 0.92494 0.97450 1.20873 0.94178 0.95926 0.93604 0.95384 0.93857 0.91716 0.94964 0.97444 0.93413 0.91768 0.96562 0.94294 0.90774 0.90277 0.91477 0.95014 0.91488 0.91987 0.92623 0.92440 0.92472 0.92595 0.91958 0.92200 0.92423 0.92519 0.92749 0.91116 0.91696 0.96326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 9.07 37.16 0.34 -2.23 16 2 C -0.08 -1.76 2.30 -90.62 -0.21 -1.96 16 3 H 0.06 1.18 6.21 -51.93 -0.32 0.86 16 4 C 0.04 0.96 4.39 -27.88 -0.12 0.84 16 5 C -0.51 -14.46 8.35 -34.44 -0.29 -14.74 16 6 H 0.05 1.44 7.07 -52.49 -0.37 1.07 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 9 Si 0.88 22.00 29.54 -169.99 -5.02 16.98 16 10 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 C 0.07 1.28 4.32 -3.83 -0.02 1.26 16 14 N -0.54 -9.30 3.43 -239.76 -0.82 -10.12 16 15 C 0.07 1.18 5.15 -4.38 -0.02 1.16 16 16 C -0.12 -1.79 5.36 -27.47 -0.15 -1.94 16 17 C 0.06 0.78 4.17 -2.82 -0.01 0.77 16 18 N -0.54 -6.60 3.76 -218.66 -0.82 -7.43 16 19 C 0.11 1.07 0.69 -131.60 -0.09 0.98 16 20 C -0.14 -1.28 8.42 37.16 0.31 -0.97 16 21 C -0.14 -1.28 7.83 37.16 0.29 -0.99 16 22 C -0.18 -1.80 7.99 37.16 0.30 -1.50 16 23 C 0.06 0.81 3.98 -4.44 -0.02 0.79 16 24 C 0.08 1.28 5.03 -6.75 -0.03 1.24 16 25 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.06 1.34 6.84 -51.93 -0.36 0.99 16 28 H 0.03 0.90 7.63 -51.93 -0.40 0.51 16 29 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.06 1.16 7.73 -51.93 -0.40 0.76 16 32 H 0.02 0.27 8.10 -51.93 -0.42 -0.15 16 33 H 0.04 0.59 7.57 -51.93 -0.39 0.20 16 34 H 0.07 1.24 5.93 -51.93 -0.31 0.93 16 35 H 0.08 1.38 7.23 -51.93 -0.38 1.01 16 36 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 37 H 0.03 0.39 6.32 -51.93 -0.33 0.06 16 38 H 0.07 0.77 6.96 -51.93 -0.36 0.41 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.55 6.32 -51.93 -0.33 0.23 16 42 H 0.06 0.52 6.53 -51.93 -0.34 0.18 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.63 6.60 -51.93 -0.34 0.29 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.60 6.59 -51.93 -0.34 0.26 16 48 H 0.05 0.85 6.93 -51.93 -0.36 0.49 16 49 H 0.07 0.86 4.96 -51.93 -0.26 0.60 16 50 H 0.06 0.98 7.75 -51.93 -0.40 0.58 16 51 H 0.02 0.28 8.07 -51.93 -0.42 -0.14 16 LS Contribution 366.80 15.07 5.53 5.53 Total: -1.00 -29.71 366.80 -9.99 -39.69 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -9.76 Total: -2.31 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: 0.18 Total: -15.76 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: -0.91 Total: -44.14 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.71 -9.99 -39.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602454746.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.234 kcal (2) G-P(sol) polarization free energy of solvation -29.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds