Wall clock time and date at job start Tue Mar 31 2020 06:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46998 * 2 1 4 4 C 1.52996 * 109.47707 * 239.99877 * 2 1 3 5 5 C 1.50702 * 109.46878 * 64.99583 * 4 2 1 6 6 H 1.07993 * 120.00246 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00039 * 180.02562 * 5 4 2 8 8 N 1.31525 * 119.99833 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00322 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47119 * 89.99778 * 9 7 5 11 11 H 1.48498 * 109.47200 * 209.99970 * 9 7 5 12 12 H 1.48500 * 109.46891 * 330.00111 * 9 7 5 13 13 C 1.52998 * 109.46984 * 119.99468 * 2 1 3 14 14 N 1.46907 * 109.47268 * 183.65981 * 13 2 1 15 15 C 1.44173 * 110.99697 * 74.22563 * 14 13 2 16 16 C 1.54323 * 112.61043 * 217.52922 * 15 14 13 17 17 C 1.54328 * 111.72025 * 318.92158 * 16 15 14 18 18 N 1.44248 * 112.54247 * 318.91706 * 17 16 15 19 19 C 1.46900 * 110.95580 * 217.58217 * 18 17 16 20 20 C 1.53003 * 109.47161 * 302.32163 * 19 18 17 21 21 C 1.52998 * 109.47510 * 62.32098 * 19 18 17 22 22 C 1.52997 * 109.47141 * 182.32562 * 19 18 17 23 23 C 1.48081 * 109.87923 * 94.44451 * 18 17 16 24 24 C 1.46086 * 112.07937 * 279.54360 * 23 18 17 25 25 H 1.09002 * 109.46834 * 184.08482 * 1 2 3 26 26 H 1.09003 * 109.47409 * 304.08373 * 1 2 3 27 27 H 1.09001 * 109.47042 * 64.08955 * 1 2 3 28 28 H 1.09000 * 109.47604 * 184.99713 * 4 2 1 29 29 H 1.09000 * 109.46941 * 305.00039 * 4 2 1 30 30 H 0.96993 * 119.99761 * 180.02562 * 8 7 5 31 31 H 1.09008 * 109.47192 * 63.66553 * 13 2 1 32 32 H 1.08999 * 109.47652 * 303.66050 * 13 2 1 33 33 H 1.09003 * 108.85771 * 338.33322 * 15 14 13 34 34 H 1.09001 * 108.85668 * 96.82774 * 15 14 13 35 35 H 1.08997 * 109.03502 * 79.49812 * 16 15 14 36 36 H 1.08998 * 109.02718 * 198.34998 * 16 15 14 37 37 H 1.09002 * 108.85160 * 79.72674 * 17 16 15 38 38 H 1.08997 * 108.85128 * 198.10833 * 17 16 15 39 39 H 1.09004 * 109.46843 * 59.99949 * 20 19 18 40 40 H 1.08992 * 109.47582 * 180.02562 * 20 19 18 41 41 H 1.08998 * 109.46883 * 300.00712 * 20 19 18 42 42 H 1.09007 * 109.47062 * 55.90507 * 21 19 18 43 43 H 1.09003 * 109.47467 * 175.90868 * 21 19 18 44 44 H 1.08998 * 109.47338 * 295.91171 * 21 19 18 45 45 H 1.08994 * 109.47362 * 67.12268 * 22 19 18 46 46 H 1.09005 * 109.47386 * 187.12352 * 22 19 18 47 47 H 1.09005 * 109.46816 * 307.11926 * 22 19 18 48 48 H 1.09007 * 108.94241 * 158.90191 * 23 18 17 49 49 H 1.08999 * 108.94661 * 40.19535 * 23 18 17 50 50 H 1.09001 * 108.94517 * 181.41912 * 24 23 18 51 51 H 1.08997 * 108.94379 * 300.03916 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 1.6414 0.0570 -2.4765 6 1 1.0806 0.9744 -2.3757 7 6 1.9925 -0.4022 -3.7282 8 7 2.6750 -1.5198 -3.8511 9 14 1.4989 0.5627 -5.2496 10 1 2.5649 1.5416 -5.5823 11 1 1.3112 -0.3711 -6.3888 12 1 0.2282 1.2849 -4.9870 13 6 2.0399 -0.7211 1.2493 14 7 3.5063 -0.6451 1.2944 15 6 3.9438 0.6771 1.6674 16 6 5.2139 1.1176 0.9095 17 6 6.2341 -0.0339 0.7870 18 7 6.3412 -0.8092 1.9987 19 6 7.7312 -1.2189 2.2392 20 6 8.2411 -2.0214 1.0404 21 6 8.6036 0.0235 2.4294 22 6 7.7968 -2.0858 3.4982 23 6 5.4461 -1.9865 1.9238 24 6 4.0608 -1.6439 2.2364 25 1 -0.3633 -1.0251 0.0732 26 1 -0.3634 0.5759 0.8511 27 1 -0.3633 0.4491 -0.9244 28 1 3.1264 -0.7994 -1.2055 29 1 1.6055 -1.7198 -1.2950 30 1 2.9223 -1.8427 -4.7317 31 1 1.7312 -1.7661 1.2172 32 1 1.6241 -0.2466 2.1381 33 1 3.1434 1.3860 1.4552 34 1 4.1514 0.6907 2.7374 35 1 4.9339 1.4520 -0.0893 36 1 5.6769 1.9471 1.4440 37 1 5.9273 -0.6912 -0.0267 38 1 7.2116 0.3855 0.5488 39 1 8.1943 -1.4038 0.1434 40 1 9.2723 -2.3258 1.2190 41 1 7.6195 -2.9065 0.9048 42 1 8.1974 0.6325 3.2371 43 1 9.6199 -0.2809 2.6796 44 1 8.6149 0.6042 1.5070 45 1 7.2802 -3.0284 3.3176 46 1 8.8389 -2.2848 3.7484 47 1 7.3182 -1.5617 4.3255 48 1 5.7926 -2.7400 2.6313 49 1 5.4897 -2.4008 0.9166 50 1 3.4538 -2.5481 2.1912 51 1 4.0158 -1.2398 3.2477 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602454747.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:38 Heat of formation + Delta-G solvation = 1.116214 kcal Electronic energy + Delta-G solvation = -24468.012535 eV Core-core repulsion = 21402.059917 eV Total energy + Delta-G solvation = -3065.952618 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.88558 -37.58315 -34.75635 -32.74368 -32.24493 -31.61797 -28.14283 -27.35803 -27.25277 -26.76330 -25.22374 -24.14918 -22.53376 -21.19176 -19.93249 -18.73905 -18.31394 -16.53454 -16.15845 -15.53423 -14.96006 -14.68727 -14.46155 -14.38654 -14.06198 -13.84012 -13.51308 -12.81109 -12.78005 -12.59390 -12.32165 -12.05121 -11.97634 -11.90134 -11.82092 -11.50806 -11.40543 -11.29813 -11.03198 -10.96264 -10.89719 -10.81014 -10.69208 -10.45682 -10.32065 -10.22202 -10.03325 -9.83936 -9.54594 -9.01126 -8.79346 -8.19801 -8.04864 -7.64538 -5.85224 -3.85002 3.38268 3.44601 3.47529 4.00033 4.34861 4.56621 4.78280 4.89259 5.11088 5.21609 5.42202 5.48819 5.50363 5.53115 5.56797 5.57676 5.59983 5.69534 5.74691 5.77366 5.80699 5.88712 5.89306 5.95871 6.01272 6.06987 6.08636 6.13533 6.18851 6.21691 6.32178 6.33963 6.36407 6.42795 6.49501 6.50250 6.64323 6.64637 7.06934 7.12113 7.35612 7.38958 7.46393 7.68906 7.80382 7.90334 8.13475 8.27074 8.62238 9.23244 9.76797 11.25891 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.018536 B = 0.004669 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.205105 B = 5995.312588 C = 6726.689353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.083 4.083 3 H 0.054 0.946 4 C 0.039 3.961 5 C -0.511 4.511 6 H 0.051 0.949 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.883 3.117 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.067 3.933 14 N -0.520 5.520 15 C 0.071 3.929 16 C -0.100 4.100 17 C 0.060 3.940 18 N -0.519 5.519 19 C 0.102 3.898 20 C -0.180 4.180 21 C -0.138 4.138 22 C -0.140 4.140 23 C 0.052 3.948 24 C 0.062 3.938 25 H 0.042 0.958 26 H 0.027 0.973 27 H 0.064 0.936 28 H 0.033 0.967 29 H 0.006 0.994 30 H 0.256 0.744 31 H 0.064 0.936 32 H 0.016 0.984 33 H 0.058 0.942 34 H 0.033 0.967 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.062 0.938 48 H 0.072 0.928 49 H 0.048 0.952 50 H 0.068 0.932 51 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.333 0.236 15.135 17.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.102 4.102 3 H 0.073 0.927 4 C 0.001 3.999 5 C -0.549 4.549 6 H 0.069 0.931 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.711 3.289 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.201 1.201 13 C -0.061 4.061 14 N -0.243 5.243 15 C -0.058 4.058 16 C -0.139 4.139 17 C -0.069 4.069 18 N -0.244 5.244 19 C 0.012 3.988 20 C -0.239 4.239 21 C -0.195 4.195 22 C -0.197 4.197 23 C -0.075 4.075 24 C -0.066 4.066 25 H 0.061 0.939 26 H 0.046 0.954 27 H 0.083 0.917 28 H 0.051 0.949 29 H 0.025 0.975 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.035 0.965 33 H 0.076 0.924 34 H 0.051 0.949 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.081 0.919 48 H 0.090 0.910 49 H 0.066 0.934 50 H 0.086 0.914 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 9.429 0.312 14.934 17.664 hybrid contribution -0.311 0.143 -0.943 1.003 sum 9.117 0.455 13.991 16.705 Atomic orbital electron populations 1.21721 0.96643 1.00323 1.00473 1.21223 0.93967 0.99226 0.95769 0.92722 1.19000 0.97392 0.94298 0.89161 1.21337 1.34086 1.08038 0.91451 0.93085 1.24972 0.95573 0.95045 0.98772 1.69982 1.39432 1.21200 1.22954 0.86744 0.78837 0.79918 0.83364 1.20886 1.21455 1.20069 1.22298 0.86010 1.00532 0.97213 1.61381 1.09344 1.04258 1.49334 1.21672 0.96675 0.90463 0.96962 1.21945 0.94839 0.96433 1.00658 1.21830 0.98136 0.96098 0.90803 1.61850 1.05025 1.20032 1.37481 1.21084 0.88581 0.94591 0.94530 1.22535 1.01267 1.00909 0.99164 1.21891 0.98258 0.97151 1.02235 1.21931 1.01306 0.99233 0.97246 1.21239 0.92879 0.92208 1.01175 1.21072 0.95308 0.96256 0.93953 0.93863 0.95404 0.91684 0.94865 0.97525 0.93383 0.91733 0.96549 0.92369 0.94868 0.91389 0.92933 0.93024 0.92449 0.92197 0.92593 0.92399 0.91929 0.92623 0.92420 0.92481 0.92545 0.91878 0.90955 0.93361 0.91406 0.94784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 9.07 37.16 0.34 -2.23 16 2 C -0.08 -1.72 2.33 -90.62 -0.21 -1.93 16 3 H 0.05 1.17 6.78 -51.93 -0.35 0.82 16 4 C 0.04 1.00 4.39 -27.88 -0.12 0.88 16 5 C -0.51 -14.49 8.35 -34.44 -0.29 -14.78 16 6 H 0.05 1.42 7.07 -52.49 -0.37 1.05 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 8 N -0.90 -27.34 13.29 55.43 0.74 -26.61 16 9 Si 0.88 22.05 29.54 -169.99 -5.02 17.03 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.07 1.18 4.21 -3.82 -0.02 1.17 16 14 N -0.52 -8.89 3.52 -239.08 -0.84 -9.73 16 15 C 0.07 1.14 4.96 -4.59 -0.02 1.12 16 16 C -0.10 -1.54 6.42 -25.34 -0.16 -1.70 16 17 C 0.06 0.89 3.82 -4.55 -0.02 0.87 16 18 N -0.52 -6.85 4.09 -223.31 -0.91 -7.76 16 19 C 0.10 1.12 0.68 -131.60 -0.09 1.03 16 20 C -0.18 -2.03 7.92 37.16 0.29 -1.73 16 21 C -0.14 -1.39 8.30 37.16 0.31 -1.08 16 22 C -0.14 -1.34 7.98 37.16 0.30 -1.04 16 23 C 0.05 0.72 4.08 -6.45 -0.03 0.69 16 24 C 0.06 0.90 5.18 -6.46 -0.03 0.87 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 1.35 6.84 -51.93 -0.36 1.00 16 28 H 0.03 0.93 7.57 -51.93 -0.39 0.54 16 29 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.06 1.15 7.62 -51.92 -0.40 0.75 16 32 H 0.02 0.27 8.01 -51.93 -0.42 -0.15 16 33 H 0.06 0.96 6.30 -51.93 -0.33 0.64 16 34 H 0.03 0.51 7.16 -51.93 -0.37 0.14 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.93 7.16 -51.93 -0.37 0.56 16 38 H 0.06 0.79 4.94 -51.93 -0.26 0.53 16 39 H 0.06 0.74 6.79 -51.93 -0.35 0.39 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.69 7.07 -51.93 -0.37 0.32 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.61 6.26 -51.93 -0.32 0.28 16 45 H 0.06 0.54 6.26 -51.93 -0.32 0.22 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.07 0.85 5.33 -51.92 -0.28 0.58 16 49 H 0.05 0.77 6.90 -51.93 -0.36 0.41 16 50 H 0.07 0.95 7.54 -51.93 -0.39 0.56 16 51 H 0.03 0.48 7.37 -51.93 -0.38 0.10 16 LS Contribution 367.59 15.07 5.54 5.54 Total: -1.00 -29.74 367.59 -10.10 -39.85 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -9.75 Total: -1.99 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: 0.15 Total: -16.32 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: -1.02 Total: -44.10 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.74 -10.10 -39.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602454747.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.963 kcal (2) G-P(sol) polarization free energy of solvation -29.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds