Wall clock time and date at job start Tue Mar 31 2020 06:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46906 * 109.47110 * 2 1 4 4 C 1.46843 * 110.99671 * 293.94899 * 3 2 1 5 5 C 1.53036 * 109.52128 * 185.83854 * 4 3 2 6 6 C 1.53112 * 109.28054 * 300.82346 * 5 4 3 7 7 H 1.08999 * 109.52130 * 297.68370 * 6 5 4 8 8 N 1.46899 * 109.52334 * 177.55910 * 6 5 4 9 9 C 1.46900 * 111.00031 * 306.04711 * 8 6 5 10 10 C 1.46898 * 111.00202 * 70.00065 * 8 6 5 11 11 C 1.53004 * 109.47429 * 170.00118 * 10 8 6 12 12 H 1.09000 * 109.46939 * 55.00044 * 11 10 8 13 13 C 1.52999 * 109.46870 * 294.99640 * 11 10 8 14 14 C 1.53004 * 109.47029 * 174.99998 * 11 10 8 15 15 C 1.50695 * 109.46637 * 185.00010 * 14 11 10 16 16 H 1.08004 * 120.00546 * 0.27598 * 15 14 11 17 17 C 1.37885 * 119.99721 * 179.97438 * 15 14 11 18 18 N 1.31516 * 119.99913 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47326 * 90.00142 * 19 17 15 21 21 H 1.48506 * 109.46545 * 209.99892 * 19 17 15 22 22 H 1.48498 * 109.47210 * 329.99603 * 19 17 15 23 23 C 1.53113 * 109.16345 * 57.65358 * 6 5 4 24 24 C 1.46844 * 111.00082 * 58.16031 * 3 2 1 25 25 H 1.08995 * 109.46300 * 294.16840 * 24 3 2 26 26 C 1.53001 * 109.46363 * 54.14525 * 24 3 2 27 27 H 1.09004 * 109.46830 * 59.99960 * 1 2 3 28 28 H 1.08995 * 109.46980 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47346 * 300.00623 * 1 2 3 30 30 H 1.09000 * 109.47346 * 239.99377 * 2 1 3 31 31 H 1.09006 * 109.46643 * 119.99294 * 2 1 3 32 32 H 1.08997 * 109.46201 * 65.82659 * 4 3 2 33 33 H 1.08996 * 109.45637 * 305.85302 * 4 3 2 34 34 H 1.08999 * 109.50279 * 180.88054 * 5 4 3 35 35 H 1.09006 * 109.53574 * 60.78681 * 5 4 3 36 36 H 1.08997 * 109.47157 * 183.95663 * 9 8 6 37 37 H 1.09005 * 109.46904 * 303.94919 * 9 8 6 38 38 H 1.09000 * 109.47353 * 63.94897 * 9 8 6 39 39 H 1.08997 * 109.47172 * 49.99825 * 10 8 6 40 40 H 1.09003 * 109.46885 * 290.00306 * 10 8 6 41 41 H 1.08992 * 109.47332 * 299.99984 * 13 11 10 42 42 H 1.09008 * 109.47086 * 60.00077 * 13 11 10 43 43 H 1.09003 * 109.46688 * 179.97438 * 13 11 10 44 44 H 1.08992 * 109.47421 * 65.00056 * 14 11 10 45 45 H 1.08997 * 109.46955 * 304.99509 * 14 11 10 46 46 H 0.97000 * 119.99651 * 180.02562 * 18 17 15 47 47 H 1.09004 * 109.50638 * 62.28698 * 23 6 5 48 48 H 1.08993 * 109.50677 * 182.40563 * 23 6 5 49 49 H 1.09003 * 109.47029 * 59.99797 * 26 24 3 50 50 H 1.08992 * 109.47186 * 180.02562 * 26 24 3 51 51 H 1.09007 * 109.47190 * 300.00043 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6704 2.0666 -1.2529 5 6 2.3185 3.4527 -1.2789 6 6 1.8235 4.2649 -0.0791 7 1 0.7448 4.4032 -0.1530 8 7 2.4867 5.5755 -0.0661 9 6 3.9475 5.4268 -0.1088 10 6 2.0108 6.4174 -1.1719 11 6 2.5277 7.8453 -0.9850 12 1 3.6132 7.8288 -0.8873 13 6 1.9111 8.4496 0.2781 14 6 2.1375 8.6918 -2.1982 15 6 2.7504 10.0628 -2.0721 16 1 3.3611 10.3045 -1.2147 17 6 2.5365 11.0065 -3.0543 18 7 3.0709 12.2031 -2.9440 19 14 1.4866 10.5859 -4.5409 20 1 0.0685 10.9221 -4.2565 21 1 1.9547 11.3665 -5.7143 22 1 1.6021 9.1347 -4.8339 23 6 2.1567 3.5101 1.2107 24 6 1.5133 2.1223 1.1646 25 1 0.4312 2.2263 1.0861 26 6 1.8604 1.3567 2.4430 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 0.5875 2.1708 -1.3200 33 1 2.0319 1.4807 -2.0979 34 1 2.0463 3.9644 -2.2020 35 1 3.4024 3.3494 -1.2262 36 1 4.4152 6.4080 -0.0274 37 1 4.2732 4.7992 0.7208 38 1 4.2382 4.9627 -1.0513 39 1 0.9209 6.4238 -1.1806 40 1 2.3793 6.0183 -2.1169 41 1 0.8256 8.4660 0.1804 42 1 2.1890 7.8464 1.1425 43 1 2.2797 9.4667 0.4115 44 1 1.0523 8.7818 -2.2447 45 1 2.5017 8.2134 -3.1073 46 1 2.9201 12.8672 -3.6348 47 1 3.2379 3.4070 1.3031 48 1 1.7689 4.0627 2.0664 49 1 2.9425 1.2522 2.5215 50 1 1.4841 1.9035 3.3075 51 1 1.4014 0.3685 2.4107 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602470801.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:20 Heat of formation + Delta-G solvation = -7.997742 kcal Electronic energy + Delta-G solvation = -23730.349970 eV Core-core repulsion = 20664.002142 eV Total energy + Delta-G solvation = -3066.347829 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.17225 -37.81127 -35.02147 -32.91964 -32.49781 -31.67010 -29.09365 -27.63331 -27.28597 -26.74422 -24.97502 -23.63366 -22.71531 -21.99489 -20.01943 -19.17181 -18.83778 -16.73099 -16.25526 -15.92567 -15.46391 -15.10609 -14.93723 -14.42344 -14.11643 -13.83841 -13.54301 -13.37208 -13.08799 -12.87129 -12.77141 -12.38627 -12.30404 -12.19159 -12.09455 -11.83762 -11.58413 -11.56768 -11.45654 -11.25060 -11.00614 -10.90603 -10.87067 -10.64534 -10.56637 -10.38130 -10.29916 -9.70587 -9.63833 -9.31804 -9.01072 -8.48633 -8.47257 -7.93622 -5.99056 -3.95482 3.33190 3.40445 3.44138 3.66405 4.10210 4.49403 4.62951 4.65679 4.76794 4.79037 4.97290 5.05618 5.10123 5.14799 5.23371 5.32042 5.34423 5.39913 5.45671 5.49405 5.54290 5.60720 5.64104 5.68866 5.75179 5.79334 5.80811 5.88172 5.93278 5.96397 6.01082 6.09399 6.15214 6.23174 6.34669 6.37138 6.49121 6.66555 6.89897 6.90119 6.93904 7.09019 7.19787 7.33190 7.36984 7.44382 7.55689 7.86770 8.61290 9.07216 9.64155 11.14504 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.030637 B = 0.003329 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.696955 B = 8407.796382 C = 8898.935418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.047 3.953 3 N -0.532 5.532 4 C 0.060 3.940 5 C -0.152 4.152 6 C 0.084 3.916 7 H 0.073 0.927 8 N -0.530 5.530 9 C 0.019 3.981 10 C 0.058 3.942 11 C -0.072 4.072 12 H 0.062 0.938 13 C -0.123 4.123 14 C -0.009 4.009 15 C -0.511 4.511 16 H 0.074 0.926 17 C 0.064 3.936 18 N -0.906 5.906 19 Si 0.878 3.122 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.267 1.267 23 C -0.101 4.101 24 C 0.080 3.920 25 H 0.043 0.957 26 C -0.147 4.147 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.034 0.966 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.026 0.974 39 H 0.065 0.935 40 H 0.028 0.972 41 H 0.037 0.963 42 H 0.044 0.956 43 H 0.058 0.942 44 H 0.010 0.990 45 H 0.011 0.989 46 H 0.262 0.738 47 H 0.072 0.928 48 H 0.073 0.927 49 H 0.063 0.937 50 H 0.060 0.940 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.789 -25.284 7.628 26.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.081 4.081 3 N -0.256 5.256 4 C -0.068 4.068 5 C -0.191 4.191 6 C -0.025 4.025 7 H 0.092 0.908 8 N -0.252 5.252 9 C -0.129 4.129 10 C -0.069 4.069 11 C -0.091 4.091 12 H 0.081 0.919 13 C -0.181 4.181 14 C -0.047 4.047 15 C -0.549 4.549 16 H 0.092 0.908 17 C -0.136 4.136 18 N -0.545 5.545 19 Si 0.706 3.294 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.192 1.192 23 C -0.139 4.139 24 C -0.028 4.028 25 H 0.060 0.940 26 C -0.204 4.204 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.044 0.956 39 H 0.083 0.917 40 H 0.047 0.953 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.028 0.972 45 H 0.029 0.971 46 H 0.071 0.929 47 H 0.091 0.909 48 H 0.092 0.908 49 H 0.082 0.918 50 H 0.079 0.921 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.378 -24.860 8.019 26.339 hybrid contribution -1.309 -0.451 -1.854 2.314 sum -4.687 -25.311 6.165 26.469 Atomic orbital electron populations 1.22447 0.98390 1.02186 1.02216 1.22193 0.92808 0.90376 1.02692 1.62184 1.59423 1.01792 1.02237 1.22001 0.97888 0.95105 0.91802 1.22312 1.02083 0.95045 0.99672 1.21752 0.98526 0.88317 0.93895 0.90846 1.62211 1.05520 1.11917 1.45509 1.22477 0.88402 1.02195 0.99859 1.22347 0.99578 0.94359 0.90644 1.21033 0.99661 0.91314 0.97114 0.91938 1.21584 0.99332 1.00591 0.96571 1.19615 0.96129 0.95827 0.93135 1.21142 1.31092 0.94906 1.07721 0.90831 1.25031 0.95620 0.94929 0.98036 1.69918 1.45366 1.04475 1.34785 0.86808 0.80944 0.78795 0.82903 1.20392 1.21525 1.19166 1.21673 1.01700 0.92991 0.97567 1.21621 0.97006 0.93801 0.90402 0.93957 1.21905 1.02472 0.99813 0.96259 0.92566 0.92270 0.92258 0.91004 0.90342 0.94818 0.91077 0.91499 0.90548 0.90829 0.91800 0.95574 0.91665 0.95346 0.94395 0.93670 0.92346 0.97177 0.97072 0.92873 0.90898 0.90849 0.91782 0.92143 0.92599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.39 9.11 37.16 0.34 -1.05 16 2 C 0.05 0.36 5.51 -3.82 -0.02 0.34 16 3 N -0.53 -5.01 4.69 -226.69 -1.06 -6.07 16 4 C 0.06 0.60 5.05 -3.84 -0.02 0.58 16 5 C -0.15 -1.73 4.65 -26.66 -0.12 -1.85 16 6 C 0.08 1.02 2.26 -67.60 -0.15 0.86 16 7 H 0.07 0.93 7.94 -51.93 -0.41 0.52 16 8 N -0.53 -7.55 4.17 -234.75 -0.98 -8.53 16 9 C 0.02 0.25 8.45 60.06 0.51 0.76 16 10 C 0.06 0.96 3.92 -3.82 -0.01 0.95 16 11 C -0.07 -1.45 2.26 -90.62 -0.20 -1.65 16 12 H 0.06 1.29 6.34 -51.93 -0.33 0.96 16 13 C -0.12 -2.40 8.89 37.16 0.33 -2.07 16 14 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 15 C -0.51 -14.57 8.96 -34.44 -0.31 -14.88 16 16 H 0.07 2.25 7.31 -52.48 -0.38 1.87 16 17 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 18 N -0.91 -28.23 13.96 55.43 0.77 -27.46 16 19 Si 0.88 22.05 27.47 -169.99 -4.67 17.38 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 23 C -0.10 -1.07 4.63 -26.65 -0.12 -1.20 16 24 C 0.08 0.74 1.84 -67.72 -0.12 0.62 16 25 H 0.04 0.41 6.61 -51.93 -0.34 0.07 16 26 C -0.15 -1.14 8.68 37.16 0.32 -0.82 16 27 H 0.06 0.44 6.68 -51.93 -0.35 0.09 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.45 6.23 -51.93 -0.32 0.12 16 30 H 0.07 0.53 8.06 -51.93 -0.42 0.11 16 31 H 0.08 0.56 6.32 -51.93 -0.33 0.23 16 32 H 0.03 0.34 6.75 -51.93 -0.35 -0.01 16 33 H 0.07 0.67 8.06 -51.93 -0.42 0.25 16 34 H 0.07 0.81 7.03 -51.93 -0.37 0.45 16 35 H 0.08 0.92 6.28 -51.93 -0.33 0.60 16 36 H 0.07 1.09 6.37 -51.93 -0.33 0.76 16 37 H 0.06 0.77 6.25 -51.93 -0.32 0.45 16 38 H 0.03 0.35 6.41 -51.93 -0.33 0.02 16 39 H 0.06 1.08 7.93 -51.93 -0.41 0.66 16 40 H 0.03 0.48 7.12 -51.93 -0.37 0.11 16 41 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.04 0.79 7.75 -51.92 -0.40 0.39 16 43 H 0.06 1.26 6.96 -51.93 -0.36 0.90 16 44 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 45 H 0.01 0.27 7.20 -51.93 -0.37 -0.10 16 46 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 47 H 0.07 0.81 6.37 -51.93 -0.33 0.48 16 48 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 51 H 0.06 0.39 6.07 -51.93 -0.32 0.07 16 LS Contribution 362.88 15.07 5.47 5.47 Total: -1.00 -29.80 362.88 -9.83 -39.63 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -9.57 Total: -2.49 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: 0.21 Total: -17.93 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: -1.27 Total: -42.06 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.80 -9.83 -39.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602470801.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.636 kcal (2) G-P(sol) polarization free energy of solvation -29.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds