Wall clock time and date at job start Tue Mar 31 2020 06:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46901 * 109.47054 * 2 1 4 4 C 1.46849 * 111.00046 * 65.78841 * 3 2 1 5 5 C 1.53037 * 109.57478 * 185.80981 * 4 3 2 6 6 C 1.53118 * 109.27486 * 300.91457 * 5 4 3 7 7 H 1.09008 * 109.52256 * 297.62265 * 6 5 4 8 8 N 1.46899 * 109.52594 * 177.50078 * 6 5 4 9 9 C 1.46903 * 110.99802 * 306.17519 * 8 6 5 10 10 C 1.46901 * 111.00223 * 70.12409 * 8 6 5 11 11 C 1.52993 * 109.47317 * 170.00209 * 10 8 6 12 12 H 1.09004 * 109.47377 * 55.00032 * 11 10 8 13 13 C 1.52996 * 109.47519 * 295.00256 * 11 10 8 14 14 C 1.53004 * 109.47345 * 175.00099 * 11 10 8 15 15 C 1.50700 * 109.47208 * 185.00031 * 14 11 10 16 16 H 1.08002 * 119.99770 * 0.02562 * 15 14 11 17 17 C 1.37871 * 120.00083 * 180.02562 * 15 14 11 18 18 N 1.31514 * 120.00147 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00278 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47228 * 179.97438 * 19 17 15 21 21 H 1.48501 * 109.46793 * 300.00001 * 19 17 15 22 22 H 1.48500 * 109.47000 * 60.00094 * 19 17 15 23 23 C 1.53114 * 109.21431 * 57.56285 * 6 5 4 24 24 C 1.46841 * 110.99893 * 189.99818 * 3 2 1 25 25 H 1.09002 * 109.46555 * 54.15024 * 24 3 2 26 26 C 1.52998 * 109.46560 * 294.17664 * 24 3 2 27 27 H 1.09005 * 109.47285 * 60.00313 * 1 2 3 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47640 * 300.00151 * 1 2 3 30 30 H 1.08995 * 109.47171 * 240.00080 * 2 1 3 31 31 H 1.08999 * 109.46810 * 120.00178 * 2 1 3 32 32 H 1.09000 * 109.46379 * 305.85945 * 4 3 2 33 33 H 1.09000 * 109.45823 * 65.83321 * 4 3 2 34 34 H 1.09003 * 109.55564 * 180.94611 * 5 4 3 35 35 H 1.09000 * 109.45747 * 60.82497 * 5 4 3 36 36 H 1.08997 * 109.47286 * 183.95686 * 9 8 6 37 37 H 1.09002 * 109.46929 * 303.95020 * 9 8 6 38 38 H 1.09002 * 109.47105 * 63.95084 * 9 8 6 39 39 H 1.08999 * 109.46924 * 50.00263 * 10 8 6 40 40 H 1.09000 * 109.47125 * 290.00533 * 10 8 6 41 41 H 1.09004 * 109.47250 * 59.99706 * 13 11 10 42 42 H 1.09000 * 109.47826 * 180.02562 * 13 11 10 43 43 H 1.09005 * 109.47352 * 300.00266 * 13 11 10 44 44 H 1.08994 * 109.47074 * 65.00340 * 14 11 10 45 45 H 1.08998 * 109.47285 * 305.00175 * 14 11 10 46 46 H 0.97005 * 119.99661 * 359.97438 * 18 17 15 47 47 H 1.08994 * 109.50458 * 62.31555 * 23 6 5 48 48 H 1.09001 * 109.50866 * 182.43873 * 23 6 5 49 49 H 1.09007 * 109.46972 * 299.94923 * 26 24 3 50 50 H 1.08997 * 109.47087 * 59.95040 * 26 24 3 51 51 H 1.08997 * 109.47253 * 179.97438 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6650 2.0686 1.2504 5 6 2.0608 3.5440 1.1582 6 6 3.5674 3.6483 0.9057 7 1 4.1086 3.2139 1.7464 8 7 3.9437 5.0604 0.7567 9 6 3.1288 5.7163 -0.2747 10 6 3.8416 5.7706 2.0386 11 6 4.4719 7.1582 1.9046 12 1 4.0065 7.6901 1.0748 13 6 5.9719 7.0136 1.6403 14 6 4.2556 7.9439 3.1995 15 6 4.7672 9.3506 3.0250 16 1 5.2026 9.6540 2.0844 17 6 4.6793 10.2503 4.0660 18 7 4.1496 9.8807 5.2116 19 14 5.3128 11.9942 3.8495 20 1 5.1029 12.7567 5.1063 21 1 6.7621 11.9580 3.5280 22 1 4.5763 12.6544 2.7418 23 6 3.9174 2.8876 -0.3762 24 6 3.4679 1.4311 -0.2380 25 1 3.7027 0.8901 -1.1547 26 6 4.1989 0.7815 0.9386 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8932 -0.5139 0.8900 32 1 0.5903 1.9905 1.4148 33 1 2.1943 1.6028 2.0816 34 1 1.8127 4.0474 2.0927 35 1 1.5207 4.0142 0.3364 36 1 3.4746 6.7405 -0.4141 37 1 3.2226 5.1703 -1.2135 38 1 2.0847 5.7247 0.0380 39 1 4.3662 5.2061 2.8094 40 1 2.7921 5.8734 2.3144 41 1 6.1261 6.4539 0.7178 42 1 6.4212 8.0022 1.5453 43 1 6.4375 6.4816 2.4701 44 1 4.7955 7.4593 4.0130 45 1 3.1917 7.9708 3.4348 46 1 3.8203 8.9752 5.3240 47 1 3.4073 3.3470 -1.2228 48 1 4.9948 2.9221 -0.5373 49 1 3.9646 1.3226 1.8554 50 1 3.8789 -0.2558 1.0371 51 1 5.2739 0.8152 0.7618 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602470802.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:23 Heat of formation + Delta-G solvation = -14.087822 kcal Electronic energy + Delta-G solvation = -23764.961924 eV Core-core repulsion = 20698.350010 eV Total energy + Delta-G solvation = -3066.611914 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.28794 -37.69444 -35.03946 -33.29507 -32.17586 -31.34139 -29.25405 -27.57536 -26.91901 -26.35239 -24.97324 -23.62784 -22.86211 -21.92285 -20.71724 -18.97810 -18.53401 -16.82331 -16.55044 -15.69436 -15.40235 -14.99452 -14.53834 -14.39089 -13.98043 -13.72977 -13.67525 -13.44175 -13.31657 -13.08696 -12.99574 -12.38964 -12.00232 -11.93611 -11.90677 -11.70458 -11.63447 -11.55193 -11.36876 -11.23839 -11.04503 -10.90677 -10.80196 -10.60627 -10.55485 -10.22231 -10.11913 -10.05405 -9.63418 -9.36058 -8.46710 -8.42666 -8.26239 -7.92509 -6.29089 -3.96729 3.47171 3.49268 3.66317 3.67718 4.13455 4.57041 4.60019 4.66673 4.84888 4.90288 4.93470 5.04955 5.13329 5.22241 5.24031 5.35135 5.39452 5.42864 5.45740 5.48134 5.60612 5.61152 5.66409 5.72761 5.74032 5.80878 5.89329 5.93219 5.94273 5.95692 6.01620 6.09663 6.14746 6.24236 6.36310 6.37231 6.51210 6.66407 6.90993 6.94656 6.95268 7.10338 7.17155 7.39497 7.41983 7.49137 7.65555 8.31431 8.54215 8.96398 9.74640 11.11345 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.035028 B = 0.003111 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.162865 B = 8997.221349 C = 9241.341192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 N -0.532 5.532 4 C 0.055 3.945 5 C -0.151 4.151 6 C 0.084 3.916 7 H 0.077 0.923 8 N -0.531 5.531 9 C 0.019 3.981 10 C 0.060 3.940 11 C -0.074 4.074 12 H 0.058 0.942 13 C -0.121 4.121 14 C 0.014 3.986 15 C -0.592 4.592 16 H 0.049 0.951 17 C 0.012 3.988 18 N -0.917 5.917 19 Si 1.067 2.933 20 H -0.283 1.283 21 H -0.288 1.288 22 H -0.289 1.289 23 C -0.101 4.101 24 C 0.083 3.917 25 H 0.081 0.919 26 C -0.189 4.189 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.036 0.964 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.026 0.974 39 H 0.064 0.936 40 H 0.028 0.972 41 H 0.043 0.957 42 H 0.053 0.947 43 H 0.036 0.964 44 H 0.005 0.995 45 H 0.002 0.998 46 H 0.267 0.733 47 H 0.071 0.929 48 H 0.073 0.927 49 H 0.062 0.938 50 H 0.052 0.948 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.226 -20.485 -11.497 23.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 N -0.256 5.256 4 C -0.073 4.073 5 C -0.190 4.190 6 C -0.025 4.025 7 H 0.095 0.905 8 N -0.253 5.253 9 C -0.129 4.129 10 C -0.067 4.067 11 C -0.093 4.093 12 H 0.076 0.924 13 C -0.178 4.178 14 C -0.023 4.023 15 C -0.630 4.630 16 H 0.068 0.932 17 C -0.191 4.191 18 N -0.554 5.554 19 Si 0.895 3.105 20 H -0.209 1.209 21 H -0.215 1.215 22 H -0.215 1.215 23 C -0.139 4.139 24 C -0.026 4.026 25 H 0.099 0.901 26 C -0.248 4.248 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.051 0.949 32 H 0.092 0.908 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.044 0.956 39 H 0.082 0.918 40 H 0.046 0.954 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.056 0.944 44 H 0.024 0.976 45 H 0.020 0.980 46 H 0.078 0.922 47 H 0.090 0.910 48 H 0.092 0.908 49 H 0.081 0.919 50 H 0.071 0.929 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.770 -18.747 -11.258 22.190 hybrid contribution -0.707 -1.976 0.255 2.114 sum -4.477 -20.723 -11.003 23.887 Atomic orbital electron populations 1.21815 0.95034 1.01338 1.02543 1.22050 0.95913 0.89263 1.00585 1.62185 1.13294 1.15013 1.35113 1.22077 1.00536 0.94402 0.90298 1.22296 0.98461 0.95798 1.02458 1.21790 0.93183 0.89514 0.98041 0.90534 1.62235 1.53920 1.00957 1.08143 1.22464 0.95165 1.00124 0.95125 1.22318 0.98568 0.96165 0.89644 1.21079 0.95757 0.92326 1.00117 0.92412 1.21562 0.95907 1.00796 0.99559 1.19248 0.95625 0.95442 0.91999 1.22032 1.43300 0.96600 1.01087 0.93248 1.25815 0.95530 1.04868 0.92900 1.70782 1.38068 1.21314 1.25192 0.83577 0.76096 0.75099 0.75702 1.20880 1.21480 1.21537 1.21629 1.01274 0.92993 0.97973 1.21691 0.86388 0.96767 0.97746 0.90088 1.22519 1.01517 1.00505 1.00240 0.91880 0.92500 0.92663 0.90998 0.94903 0.90824 0.94583 0.91537 0.90645 0.91018 0.91810 0.95595 0.91764 0.95420 0.93757 0.92758 0.94446 0.97634 0.97998 0.92223 0.90994 0.90825 0.91865 0.92925 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.84 37.16 0.37 -0.75 16 2 C 0.05 0.41 5.14 -3.82 -0.02 0.39 16 3 N -0.53 -5.18 4.61 -226.69 -1.04 -6.23 16 4 C 0.06 0.57 4.99 -3.83 -0.02 0.55 16 5 C -0.15 -1.80 4.66 -26.65 -0.12 -1.92 16 6 C 0.08 1.04 1.95 -67.59 -0.13 0.91 16 7 H 0.08 1.01 6.35 -51.92 -0.33 0.68 16 8 N -0.53 -7.88 4.17 -234.74 -0.98 -8.86 16 9 C 0.02 0.27 8.45 60.07 0.51 0.78 16 10 C 0.06 1.06 3.92 -3.83 -0.02 1.05 16 11 C -0.07 -1.55 2.26 -90.62 -0.20 -1.75 16 12 H 0.06 1.24 6.34 -51.93 -0.33 0.91 16 13 C -0.12 -2.43 8.89 37.16 0.33 -2.10 16 14 C 0.01 0.37 3.76 -27.88 -0.10 0.27 16 15 C -0.59 -16.99 8.41 -34.44 -0.29 -17.28 16 16 H 0.05 1.40 7.06 -52.49 -0.37 1.03 16 17 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 18 N -0.92 -28.60 13.65 55.43 0.76 -27.84 16 19 Si 1.07 25.77 29.90 -169.99 -5.08 20.69 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 C -0.10 -1.09 4.88 -26.65 -0.13 -1.22 16 24 C 0.08 0.78 2.92 -67.72 -0.20 0.59 16 25 H 0.08 0.71 8.02 -51.93 -0.42 0.29 16 26 C -0.19 -1.70 8.18 37.16 0.30 -1.39 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.43 6.43 -51.93 -0.33 0.10 16 30 H 0.07 0.54 7.99 -51.93 -0.41 0.13 16 31 H 0.03 0.27 6.95 -51.93 -0.36 -0.09 16 32 H 0.07 0.73 6.21 -51.93 -0.32 0.41 16 33 H 0.04 0.38 6.19 -51.93 -0.32 0.06 16 34 H 0.07 0.86 7.04 -51.93 -0.37 0.50 16 35 H 0.07 0.95 6.28 -51.93 -0.33 0.63 16 36 H 0.07 1.10 6.37 -51.93 -0.33 0.77 16 37 H 0.06 0.79 6.25 -51.93 -0.32 0.47 16 38 H 0.03 0.36 6.41 -51.93 -0.33 0.03 16 39 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 40 H 0.03 0.50 7.13 -51.93 -0.37 0.13 16 41 H 0.04 0.80 7.75 -51.93 -0.40 0.40 16 42 H 0.05 1.17 6.95 -51.93 -0.36 0.81 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.01 0.15 8.01 -51.93 -0.42 -0.27 16 45 H 0.00 0.05 8.01 -51.93 -0.42 -0.37 16 46 H 0.27 8.32 7.22 -40.82 -0.29 8.02 16 47 H 0.07 0.82 6.37 -51.93 -0.33 0.49 16 48 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.06 0.63 4.80 -51.92 -0.25 0.38 16 50 H 0.05 0.43 6.77 -51.93 -0.35 0.08 16 51 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 362.89 15.07 5.47 5.47 Total: -1.00 -30.12 362.89 -10.10 -40.22 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -9.39 Total: -1.81 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: 0.17 Total: -21.64 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: -1.27 Total: -42.93 kcal Atomic # 14 Polarization: 25.77 SS G_CDS: -5.08 Total: 20.69 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.12 -10.10 -40.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602470802.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.131 kcal (2) G-P(sol) polarization free energy of solvation -30.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds