Wall clock time and date at job start Tue Mar 31 2020 06:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46903 * 109.47261 * 2 1 4 4 C 1.46842 * 110.99421 * 70.24061 * 3 2 1 5 5 C 1.53042 * 109.52060 * 185.79763 * 4 3 2 6 6 C 1.53114 * 109.31340 * 300.88667 * 5 4 3 7 7 H 1.08999 * 109.52407 * 297.66392 * 6 5 4 8 8 N 1.46900 * 109.52440 * 177.53623 * 6 5 4 9 9 C 1.46898 * 111.00154 * 183.95204 * 8 6 5 10 10 C 1.46898 * 110.99656 * 59.99864 * 8 6 5 11 11 C 1.53003 * 109.47127 * 189.99755 * 10 8 6 12 12 H 1.09001 * 109.47299 * 305.00687 * 11 10 8 13 13 C 1.53005 * 109.46791 * 65.00042 * 11 10 8 14 14 C 1.52999 * 109.47388 * 184.99845 * 11 10 8 15 15 C 1.50700 * 109.47163 * 174.99902 * 14 11 10 16 16 H 1.07998 * 119.99824 * 0.02562 * 15 14 11 17 17 C 1.37874 * 120.00152 * 180.02562 * 15 14 11 18 18 N 1.31518 * 119.99965 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00178 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47278 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47288 * 119.99864 * 19 17 15 22 22 H 1.48504 * 109.47100 * 239.99770 * 19 17 15 23 23 C 1.53121 * 109.16105 * 57.63139 * 6 5 4 24 24 C 1.46842 * 110.99577 * 194.49699 * 3 2 1 25 25 H 1.09008 * 109.45434 * 294.16474 * 24 3 2 26 26 C 1.52997 * 109.46785 * 54.14071 * 24 3 2 27 27 H 1.08998 * 109.47504 * 59.99661 * 1 2 3 28 28 H 1.09000 * 109.47434 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47321 * 300.00066 * 1 2 3 30 30 H 1.09005 * 109.46936 * 239.99556 * 2 1 3 31 31 H 1.09005 * 109.46885 * 120.00171 * 2 1 3 32 32 H 1.09001 * 109.42713 * 65.81179 * 4 3 2 33 33 H 1.08994 * 109.49939 * 305.83503 * 4 3 2 34 34 H 1.08995 * 109.50212 * 180.92421 * 5 4 3 35 35 H 1.09001 * 109.49988 * 60.84510 * 5 4 3 36 36 H 1.08998 * 109.47218 * 60.00021 * 9 8 6 37 37 H 1.08998 * 109.47455 * 180.02562 * 9 8 6 38 38 H 1.09006 * 109.47360 * 300.00159 * 9 8 6 39 39 H 1.08997 * 109.47381 * 310.00216 * 10 8 6 40 40 H 1.09000 * 109.47374 * 70.00375 * 10 8 6 41 41 H 1.08999 * 109.46863 * 179.97438 * 13 11 10 42 42 H 1.08999 * 109.46835 * 300.00175 * 13 11 10 43 43 H 1.09001 * 109.46672 * 60.00261 * 13 11 10 44 44 H 1.08993 * 109.47119 * 295.00673 * 14 11 10 45 45 H 1.09006 * 109.46882 * 55.00291 * 14 11 10 46 46 H 0.96994 * 120.00078 * 179.97438 * 18 17 15 47 47 H 1.08995 * 109.50354 * 62.29035 * 23 6 5 48 48 H 1.09000 * 109.50325 * 182.41003 * 23 6 5 49 49 H 1.09007 * 109.47312 * 172.74925 * 26 24 3 50 50 H 1.08999 * 109.47148 * 292.75462 * 26 24 3 51 51 H 1.09002 * 109.47056 * 52.75829 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7581 2.0355 1.2902 5 6 2.1482 3.5130 1.2064 6 6 3.6325 3.6253 0.8476 7 1 4.2330 3.1699 1.6351 8 7 3.9981 5.0412 0.7081 9 6 5.3936 5.1841 0.2721 10 6 3.7601 5.7721 1.9599 11 6 3.9115 7.2740 1.7102 12 1 4.8887 7.4725 1.2700 13 6 2.8155 7.7447 0.7520 14 6 3.7872 8.0266 3.0365 15 6 4.0579 9.4917 2.8100 16 1 4.2946 9.8502 1.8191 17 6 4.0035 10.3744 3.8677 18 7 3.7148 9.9379 5.0743 19 14 4.3384 12.1905 3.5868 20 1 4.6365 12.4226 2.1507 21 1 3.1437 12.9807 3.9788 22 1 5.5019 12.6121 4.4078 23 6 3.8859 2.8985 -0.4761 24 6 3.4464 1.4386 -0.3432 25 1 4.0271 0.9546 0.4421 26 6 3.6793 0.7133 -1.6700 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5139 0.8900 32 1 2.3463 1.5482 2.0678 33 1 0.6983 1.9528 1.5311 34 1 1.9693 3.9918 2.1691 35 1 1.5501 4.0043 0.4389 36 1 5.5253 4.6925 -0.6918 37 1 5.6381 6.2420 0.1772 38 1 6.0531 4.7237 1.0079 39 1 2.7517 5.5629 2.3167 40 1 4.4842 5.4538 2.7098 41 1 2.9231 8.8147 0.5745 42 1 2.9041 7.2085 -0.1928 43 1 1.8383 7.5462 1.1922 44 1 2.7798 7.9003 3.4328 45 1 4.5104 7.6294 3.7488 46 1 3.6769 10.5588 5.8184 47 1 3.3152 3.3795 -1.2704 48 1 4.9486 2.9382 -0.7154 49 1 4.7108 0.8623 -1.9895 50 1 3.4895 -0.3522 -1.5398 51 1 3.0035 1.1130 -2.4261 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602470803.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:25 Heat of formation + Delta-G solvation = -11.961132 kcal Electronic energy + Delta-G solvation = -23561.876672 eV Core-core repulsion = 20495.356978 eV Total energy + Delta-G solvation = -3066.519694 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.87296 -37.58287 -34.79843 -33.09904 -32.56082 -31.72968 -29.25615 -27.76251 -26.72765 -26.36301 -24.97960 -23.29786 -22.28480 -21.84606 -20.28800 -19.63702 -18.79952 -16.36787 -16.30333 -15.68930 -15.38279 -14.76557 -14.66826 -14.31741 -14.25214 -14.03230 -13.87252 -13.34357 -12.98019 -12.57392 -12.42733 -12.27679 -12.19516 -12.09780 -12.03925 -11.85191 -11.42779 -11.38098 -11.22427 -11.08394 -11.05154 -10.88030 -10.80254 -10.62973 -10.47127 -10.26560 -10.11812 -10.06058 -9.50797 -9.07074 -8.89314 -8.44651 -8.29912 -7.92950 -5.94763 -3.95454 3.33880 3.41417 3.45736 3.67847 4.12815 4.51010 4.62472 4.76144 4.76230 4.97287 5.02515 5.16848 5.23973 5.28394 5.35626 5.37992 5.41127 5.48010 5.49044 5.53535 5.59890 5.69811 5.71564 5.75744 5.80996 5.86514 5.90890 5.94768 6.00828 6.03896 6.10620 6.15859 6.26648 6.29332 6.44056 6.49909 6.61979 6.78172 6.99019 7.00392 7.09134 7.21173 7.27224 7.48677 7.52041 7.73901 7.90322 8.06174 8.50713 9.11322 9.67813 11.16894 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.032798 B = 0.003107 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.503922 B = 9008.345939 C = 9450.730611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.044 3.956 3 N -0.532 5.532 4 C 0.057 3.943 5 C -0.111 4.111 6 C 0.085 3.915 7 H 0.030 0.970 8 N -0.532 5.532 9 C 0.021 3.979 10 C 0.057 3.943 11 C -0.080 4.080 12 H 0.055 0.945 13 C -0.121 4.121 14 C 0.027 3.973 15 C -0.510 4.510 16 H 0.056 0.944 17 C 0.054 3.946 18 N -0.898 5.898 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.103 4.103 24 C 0.083 3.917 25 H 0.035 0.965 26 C -0.147 4.147 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.029 0.971 32 H 0.028 0.972 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.018 0.982 39 H 0.072 0.928 40 H 0.025 0.975 41 H 0.052 0.948 42 H 0.042 0.958 43 H 0.038 0.962 44 H 0.015 0.985 45 H 0.011 0.989 46 H 0.258 0.742 47 H 0.081 0.919 48 H 0.065 0.935 49 H 0.060 0.940 50 H 0.053 0.947 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.198 -20.839 -11.318 23.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.084 4.084 3 N -0.258 5.258 4 C -0.071 4.071 5 C -0.149 4.149 6 C -0.024 4.024 7 H 0.048 0.952 8 N -0.255 5.255 9 C -0.127 4.127 10 C -0.070 4.070 11 C -0.099 4.099 12 H 0.074 0.926 13 C -0.179 4.179 14 C -0.011 4.011 15 C -0.548 4.548 16 H 0.075 0.925 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.717 3.283 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.212 1.212 23 C -0.141 4.141 24 C -0.025 4.025 25 H 0.053 0.947 26 C -0.204 4.204 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.036 0.964 39 H 0.090 0.910 40 H 0.043 0.957 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.034 0.966 45 H 0.029 0.971 46 H 0.068 0.932 47 H 0.099 0.901 48 H 0.084 0.916 49 H 0.079 0.921 50 H 0.072 0.928 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.771 -20.312 -11.862 23.685 hybrid contribution 1.199 0.233 1.422 1.875 sum -1.572 -20.079 -10.440 22.685 Atomic orbital electron populations 1.21782 0.94944 1.01173 1.02619 1.22169 0.96147 0.89299 1.00770 1.61999 1.16415 1.16153 1.31200 1.22121 1.00978 0.94876 0.89109 1.21686 0.95722 0.94835 1.02633 1.21622 0.95890 0.88816 0.96028 0.95247 1.62076 1.21501 1.09426 1.32527 1.22441 0.88285 1.02682 0.99306 1.22388 1.00494 0.95538 0.88572 1.21221 0.98463 0.91157 0.99090 0.92641 1.21567 0.97766 1.00513 0.98013 1.19127 0.96964 0.94385 0.90584 1.21280 1.46522 0.92759 0.94235 0.92537 1.25023 0.95611 0.98696 0.95282 1.69978 1.49669 1.34586 0.99526 0.86587 0.77781 0.85716 0.78229 1.19745 1.21095 1.21163 1.21720 1.00814 0.93329 0.98248 1.21586 0.87863 0.96424 0.96675 0.94671 1.21916 1.01868 0.99558 0.97056 0.91823 0.92630 0.92695 0.90346 0.95306 0.95346 0.90369 0.91094 0.90021 0.91864 0.90644 0.96360 0.90976 0.95700 0.92920 0.93880 0.94288 0.96638 0.97082 0.93207 0.90077 0.91631 0.92147 0.92765 0.91480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.93 37.15 0.37 -0.78 16 2 C 0.04 0.38 5.47 -3.83 -0.02 0.35 16 3 N -0.53 -5.47 4.46 -226.69 -1.01 -6.48 16 4 C 0.06 0.62 5.31 -3.83 -0.02 0.60 16 5 C -0.11 -1.40 5.09 -26.65 -0.14 -1.53 16 6 C 0.09 1.11 2.01 -67.59 -0.14 0.98 16 7 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 8 N -0.53 -8.05 4.09 -234.74 -0.96 -9.01 16 9 C 0.02 0.30 8.93 60.06 0.54 0.83 16 10 C 0.06 1.02 4.16 -3.82 -0.02 1.00 16 11 C -0.08 -1.68 2.26 -90.62 -0.20 -1.88 16 12 H 0.06 1.18 6.26 -51.93 -0.33 0.85 16 13 C -0.12 -2.41 8.89 37.16 0.33 -2.08 16 14 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 15 C -0.51 -14.43 8.41 -34.44 -0.29 -14.72 16 16 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 17 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 19 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 C -0.10 -1.15 4.22 -26.65 -0.11 -1.27 16 24 C 0.08 0.83 2.44 -67.72 -0.17 0.66 16 25 H 0.04 0.37 8.14 -51.92 -0.42 -0.05 16 26 C -0.15 -1.19 8.56 37.16 0.32 -0.87 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.45 6.59 -51.93 -0.34 0.10 16 30 H 0.08 0.61 5.61 -51.93 -0.29 0.32 16 31 H 0.03 0.25 8.08 -51.93 -0.42 -0.17 16 32 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.79 6.42 -51.93 -0.33 0.46 16 34 H 0.07 0.95 6.34 -51.93 -0.33 0.62 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 0.76 6.30 -51.93 -0.33 0.43 16 37 H 0.07 1.14 6.21 -51.93 -0.32 0.82 16 38 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.07 1.28 5.88 -51.93 -0.31 0.97 16 40 H 0.02 0.46 8.12 -51.93 -0.42 0.04 16 41 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 42 H 0.04 0.78 7.75 -51.93 -0.40 0.37 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.07 0.69 6.51 -51.93 -0.34 0.35 16 49 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 50 H 0.05 0.39 6.46 -51.93 -0.34 0.05 16 51 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 372.95 15.07 5.62 5.62 Total: -1.00 -29.59 372.95 -10.26 -39.85 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -9.85 Total: -3.70 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 0.23 Total: -16.65 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: -1.23 Total: -42.01 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.59 -10.26 -39.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602470803.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.887 kcal (2) G-P(sol) polarization free energy of solvation -29.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds