Wall clock time and date at job start Tue Mar 31 2020 06:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46901 * 109.47099 * 2 1 4 4 C 1.46853 * 110.99877 * 65.78631 * 3 2 1 5 5 C 1.53046 * 109.57103 * 185.80495 * 4 3 2 6 6 C 1.53113 * 109.27718 * 300.91688 * 5 4 3 7 7 H 1.08996 * 109.52831 * 297.62741 * 6 5 4 8 8 N 1.46901 * 109.51975 * 177.49577 * 6 5 4 9 9 C 1.46903 * 111.00070 * 184.08320 * 8 6 5 10 10 C 1.46898 * 110.99919 * 60.13079 * 8 6 5 11 11 C 1.52997 * 109.47005 * 189.99737 * 10 8 6 12 12 H 1.09001 * 109.47375 * 305.00172 * 11 10 8 13 13 C 1.52997 * 109.47232 * 65.00039 * 11 10 8 14 14 C 1.53006 * 109.47164 * 185.00138 * 11 10 8 15 15 C 1.50695 * 109.47196 * 175.00240 * 14 11 10 16 16 H 1.07999 * 120.00313 * 359.97438 * 15 14 11 17 17 C 1.37883 * 120.00213 * 179.97438 * 15 14 11 18 18 N 1.31515 * 119.99492 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00314 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46914 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47102 * 119.99766 * 19 17 15 22 22 H 1.48498 * 109.46997 * 240.00140 * 19 17 15 23 23 C 1.53124 * 109.21324 * 57.56399 * 6 5 4 24 24 C 1.46842 * 111.00090 * 189.99889 * 3 2 1 25 25 H 1.09007 * 109.46276 * 54.14546 * 24 3 2 26 26 C 1.52999 * 109.46335 * 294.17697 * 24 3 2 27 27 H 1.08998 * 109.46895 * 60.00047 * 1 2 3 28 28 H 1.09000 * 109.46493 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47033 * 299.99867 * 1 2 3 30 30 H 1.08995 * 109.47219 * 239.99612 * 2 1 3 31 31 H 1.08998 * 109.46895 * 119.99953 * 2 1 3 32 32 H 1.08998 * 109.46502 * 305.85971 * 4 3 2 33 33 H 1.09000 * 109.45642 * 65.83717 * 4 3 2 34 34 H 1.08999 * 109.55047 * 180.94637 * 5 4 3 35 35 H 1.08998 * 109.45220 * 60.83076 * 5 4 3 36 36 H 1.08999 * 109.46983 * 296.05215 * 9 8 6 37 37 H 1.09001 * 109.47083 * 56.04798 * 9 8 6 38 38 H 1.09000 * 109.47330 * 176.04762 * 9 8 6 39 39 H 1.08998 * 109.46867 * 69.99995 * 10 8 6 40 40 H 1.09002 * 109.47308 * 309.99903 * 10 8 6 41 41 H 1.09001 * 109.47289 * 60.00075 * 13 11 10 42 42 H 1.09004 * 109.47261 * 179.97438 * 13 11 10 43 43 H 1.09002 * 109.47153 * 299.99992 * 13 11 10 44 44 H 1.09007 * 109.46744 * 294.99886 * 14 11 10 45 45 H 1.08995 * 109.46794 * 55.00131 * 14 11 10 46 46 H 0.97003 * 119.99950 * 180.02562 * 18 17 15 47 47 H 1.09004 * 109.50175 * 62.31501 * 23 6 5 48 48 H 1.09001 * 109.50618 * 182.43426 * 23 6 5 49 49 H 1.09003 * 109.47230 * 299.94496 * 26 24 3 50 50 H 1.09007 * 109.46937 * 59.94745 * 26 24 3 51 51 H 1.09004 * 109.47309 * 179.97438 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6650 2.0686 1.2504 5 6 2.0610 3.5440 1.1582 6 6 3.5676 3.6483 0.9058 7 1 4.1087 3.2139 1.7463 8 7 3.9438 5.0604 0.7567 9 6 5.3668 5.1932 0.4170 10 6 3.6188 5.8227 1.9697 11 6 3.7892 7.3178 1.6934 12 1 4.7954 7.5057 1.3185 13 6 2.7643 7.7635 0.6486 14 6 3.5724 8.1037 2.9881 15 6 3.8601 9.5627 2.7444 16 1 4.1673 9.8961 1.7642 17 6 3.7311 10.4721 3.7728 18 7 3.3566 10.0661 4.9663 19 14 4.0884 12.2805 3.4708 20 1 4.4896 12.4760 2.0544 21 1 2.8700 13.0801 3.7555 22 1 5.1905 12.7229 4.3624 23 6 3.9175 2.8875 -0.3762 24 6 3.4680 1.4311 -0.2380 25 1 3.7028 0.8901 -1.1547 26 6 4.1990 0.7815 0.9386 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 0.5903 1.9905 1.4148 33 1 2.1944 1.6028 2.0816 34 1 1.8129 4.0474 2.0927 35 1 1.5209 4.0142 0.3364 36 1 5.9735 4.8155 1.2400 37 1 5.5802 4.6192 -0.4848 38 1 5.6026 6.2431 0.2436 39 1 4.2877 5.5237 2.7766 40 1 2.5874 5.6220 2.2595 41 1 1.7581 7.5757 1.0234 42 1 2.8854 8.8288 0.4520 43 1 2.9187 7.2036 -0.2739 44 1 2.5392 7.9868 3.3154 45 1 4.2430 7.7251 3.7595 46 1 3.2655 10.7059 5.6897 47 1 3.4074 3.3470 -1.2228 48 1 4.9950 2.9220 -0.5373 49 1 3.9648 1.3226 1.8554 50 1 3.8789 -0.2559 1.0371 51 1 5.2741 0.8152 0.7619 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602470804.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:27 Heat of formation + Delta-G solvation = -9.537540 kcal Electronic energy + Delta-G solvation = -23729.744856 eV Core-core repulsion = 20663.330257 eV Total energy + Delta-G solvation = -3066.414599 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.14378 -37.57882 -34.80945 -33.13776 -32.05239 -31.68486 -29.24874 -27.71571 -26.87804 -26.48940 -24.96087 -23.26933 -22.79239 -21.83952 -20.66116 -18.79931 -18.66893 -16.64948 -16.33801 -15.60055 -15.24640 -14.84783 -14.53190 -14.37606 -14.31199 -14.09046 -13.47497 -13.32909 -13.10831 -12.97137 -12.46110 -12.42088 -12.18299 -12.10276 -11.91438 -11.88470 -11.37402 -11.30696 -11.24655 -11.08504 -11.06434 -10.91313 -10.81973 -10.65815 -10.36582 -10.26745 -10.07829 -10.06229 -9.50816 -9.06863 -8.89117 -8.40097 -8.29840 -7.90813 -5.94709 -3.95319 3.33948 3.41470 3.45797 3.71610 4.15483 4.51133 4.60834 4.70281 4.87234 4.96859 5.00924 5.12656 5.20151 5.26930 5.27969 5.40962 5.42891 5.43460 5.46819 5.52099 5.65010 5.67741 5.74379 5.75452 5.79904 5.86950 5.91171 5.97816 6.00629 6.03975 6.10195 6.16215 6.26395 6.29668 6.46218 6.50219 6.62222 6.78556 6.98933 6.99961 7.09643 7.21527 7.27438 7.49568 7.52780 7.74035 7.90536 8.06248 8.50905 9.11445 9.67897 11.16935 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.032233 B = 0.003172 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.466448 B = 8826.010904 C = 9150.539845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 N -0.530 5.530 4 C 0.052 3.948 5 C -0.111 4.111 6 C 0.085 3.915 7 H 0.033 0.967 8 N -0.532 5.532 9 C 0.021 3.979 10 C 0.058 3.942 11 C -0.080 4.080 12 H 0.055 0.945 13 C -0.121 4.121 14 C 0.027 3.973 15 C -0.510 4.510 16 H 0.056 0.944 17 C 0.054 3.946 18 N -0.898 5.898 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.104 4.104 24 C 0.084 3.916 25 H 0.080 0.920 26 C -0.190 4.190 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.032 0.968 32 H 0.077 0.923 33 H 0.034 0.966 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.018 0.982 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.024 0.976 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.052 0.948 43 H 0.042 0.958 44 H 0.015 0.985 45 H 0.011 0.989 46 H 0.258 0.742 47 H 0.080 0.920 48 H 0.066 0.934 49 H 0.063 0.937 50 H 0.052 0.948 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.315 -21.099 -10.003 23.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 N -0.254 5.254 4 C -0.076 4.076 5 C -0.149 4.149 6 C -0.024 4.024 7 H 0.051 0.949 8 N -0.256 5.256 9 C -0.127 4.127 10 C -0.069 4.069 11 C -0.099 4.099 12 H 0.073 0.927 13 C -0.179 4.179 14 C -0.011 4.011 15 C -0.548 4.548 16 H 0.075 0.925 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.717 3.283 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.212 1.212 23 C -0.142 4.142 24 C -0.025 4.025 25 H 0.099 0.901 26 C -0.249 4.249 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.050 0.950 32 H 0.095 0.905 33 H 0.052 0.948 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.037 0.963 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.043 0.957 40 H 0.090 0.910 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.034 0.966 45 H 0.029 0.971 46 H 0.068 0.932 47 H 0.098 0.902 48 H 0.084 0.916 49 H 0.082 0.918 50 H 0.071 0.929 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.858 -20.585 -10.605 23.231 hybrid contribution 1.127 0.245 1.464 1.864 sum -0.731 -20.340 -9.141 22.312 Atomic orbital electron populations 1.21815 0.94965 1.01295 1.02664 1.22054 0.95992 0.89299 1.00473 1.62188 1.13056 1.14933 1.35255 1.22171 1.00724 0.94645 0.90097 1.21679 0.95435 0.94817 1.02920 1.21644 0.95764 0.88689 0.96263 0.94869 1.62071 1.18126 1.08757 1.36658 1.22442 0.88068 1.02724 0.99468 1.22386 1.00349 0.95241 0.88972 1.21211 0.98716 0.91249 0.98742 0.92668 1.21566 0.98059 1.00509 0.97720 1.19128 0.96887 0.94179 0.90860 1.21281 1.44864 0.92620 0.96028 0.92541 1.25025 0.95576 0.98758 0.95254 1.69980 1.48205 1.34225 1.01346 0.86585 0.77842 0.85649 0.78241 1.19744 1.21097 1.21164 1.21696 1.00510 0.93272 0.98717 1.21676 0.86599 0.96647 0.97587 0.90136 1.22535 1.01258 1.00631 1.00438 0.91784 0.92571 0.92580 0.91075 0.95006 0.90459 0.94775 0.91160 0.90110 0.96330 0.91847 0.90745 0.95726 0.91006 0.94296 0.92930 0.93880 0.96647 0.97095 0.93211 0.90183 0.91577 0.91834 0.92860 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.84 37.16 0.37 -0.78 16 2 C 0.05 0.42 5.14 -3.82 -0.02 0.40 16 3 N -0.53 -5.33 4.61 -226.68 -1.04 -6.38 16 4 C 0.05 0.55 4.99 -3.83 -0.02 0.53 16 5 C -0.11 -1.38 5.10 -26.65 -0.14 -1.52 16 6 C 0.08 1.09 1.70 -67.59 -0.11 0.97 16 7 H 0.03 0.45 6.56 -51.93 -0.34 0.11 16 8 N -0.53 -8.01 4.09 -234.74 -0.96 -8.97 16 9 C 0.02 0.30 8.96 60.07 0.54 0.83 16 10 C 0.06 1.02 4.16 -3.83 -0.02 1.01 16 11 C -0.08 -1.67 2.26 -90.62 -0.20 -1.88 16 12 H 0.05 1.17 6.34 -51.93 -0.33 0.84 16 13 C -0.12 -2.41 8.89 37.16 0.33 -2.08 16 14 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 15 C -0.51 -14.43 8.41 -34.44 -0.29 -14.72 16 16 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 17 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 19 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 C -0.10 -1.14 4.46 -26.65 -0.12 -1.26 16 24 C 0.08 0.81 2.92 -67.73 -0.20 0.61 16 25 H 0.08 0.72 8.02 -51.93 -0.42 0.30 16 26 C -0.19 -1.73 8.18 37.16 0.30 -1.42 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.45 6.43 -51.93 -0.33 0.11 16 30 H 0.07 0.55 7.99 -51.93 -0.41 0.13 16 31 H 0.03 0.27 6.95 -51.93 -0.36 -0.10 16 32 H 0.08 0.78 6.21 -51.93 -0.32 0.45 16 33 H 0.03 0.37 6.19 -51.93 -0.32 0.04 16 34 H 0.07 0.93 6.34 -51.93 -0.33 0.60 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.06 0.76 6.07 -51.93 -0.32 0.44 16 38 H 0.07 1.12 6.37 -51.93 -0.33 0.79 16 39 H 0.02 0.46 8.12 -51.93 -0.42 0.03 16 40 H 0.07 1.27 5.89 -51.93 -0.31 0.97 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 43 H 0.04 0.78 7.75 -51.93 -0.40 0.37 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 47 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.07 0.68 6.42 -51.93 -0.33 0.35 16 49 H 0.06 0.65 4.80 -51.93 -0.25 0.40 16 50 H 0.05 0.45 6.77 -51.93 -0.35 0.09 16 51 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 366.57 15.07 5.52 5.52 Total: -1.00 -29.51 366.57 -10.11 -39.63 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -9.55 Total: -2.93 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: 0.20 Total: -17.26 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: -1.27 Total: -41.86 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.51 -10.11 -39.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602470804.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.089 kcal (2) G-P(sol) polarization free energy of solvation -29.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds