Wall clock time and date at job start Tue Mar 31 2020 06:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46966 * 2 1 4 4 C 1.53009 * 109.46889 * 240.00515 * 2 1 3 5 5 C 1.50700 * 109.46986 * 64.99960 * 4 2 1 6 6 H 1.07999 * 120.00368 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99642 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99500 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99945 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.46885 * 89.99739 * 9 7 5 11 11 H 1.48495 * 109.46638 * 209.99624 * 9 7 5 12 12 H 1.48492 * 109.47025 * 329.99981 * 9 7 5 13 13 C 1.52999 * 109.46992 * 120.00497 * 2 1 3 14 14 N 1.46890 * 109.47159 * 295.43566 * 13 2 1 15 15 C 1.46901 * 111.00095 * 164.18285 * 14 13 2 16 16 C 1.46901 * 110.99811 * 288.13053 * 14 13 2 17 17 C 1.53006 * 109.47113 * 170.00208 * 16 14 13 18 18 C 1.53000 * 109.47273 * 176.84948 * 17 16 14 19 19 H 1.09000 * 109.46265 * 54.37987 * 18 17 16 20 20 C 1.53037 * 109.46062 * 294.41016 * 18 17 16 21 21 C 1.53124 * 109.27802 * 180.80234 * 20 18 17 22 22 C 1.53127 * 109.15684 * 57.65405 * 21 20 18 23 23 C 1.53036 * 109.27576 * 302.34246 * 22 21 20 24 24 N 1.46843 * 109.46469 * 174.36418 * 18 17 16 25 25 C 1.46898 * 111.00077 * 305.85740 * 24 18 17 26 26 H 1.09007 * 109.46867 * 64.80095 * 1 2 3 27 27 H 1.08998 * 109.47248 * 184.80445 * 1 2 3 28 28 H 1.08996 * 109.46653 * 304.80691 * 1 2 3 29 29 H 1.09001 * 109.46822 * 184.99915 * 4 2 1 30 30 H 1.09000 * 109.47047 * 304.99909 * 4 2 1 31 31 H 0.97007 * 119.99754 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.46993 * 175.43209 * 13 2 1 33 33 H 1.09000 * 109.46851 * 55.43893 * 13 2 1 34 34 H 1.09001 * 109.47564 * 65.68904 * 15 14 13 35 35 H 1.08998 * 109.47227 * 185.69425 * 15 14 13 36 36 H 1.09000 * 109.46829 * 305.69148 * 15 14 13 37 37 H 1.08998 * 109.47438 * 290.00103 * 16 14 13 38 38 H 1.09000 * 109.47289 * 50.00584 * 16 14 13 39 39 H 1.09003 * 109.46927 * 296.84446 * 17 16 14 40 40 H 1.08994 * 109.46927 * 56.84918 * 17 16 14 41 41 H 1.09004 * 109.50511 * 300.74404 * 20 18 17 42 42 H 1.08997 * 109.50725 * 60.86401 * 20 18 17 43 43 H 1.08998 * 109.52420 * 177.55385 * 21 20 18 44 44 H 1.08991 * 109.52653 * 297.68282 * 21 20 18 45 45 H 1.08995 * 109.50361 * 62.28820 * 22 21 20 46 46 H 1.09000 * 109.49751 * 182.40462 * 22 21 20 47 47 H 1.09002 * 109.45878 * 179.19875 * 23 22 21 48 48 H 1.08999 * 109.46603 * 299.17315 * 23 22 21 49 49 H 1.08997 * 109.47332 * 66.15985 * 25 24 18 50 50 H 1.09000 * 109.47172 * 186.16070 * 25 24 18 51 51 H 1.09003 * 109.46751 * 306.16103 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6413 0.0572 -2.4766 6 1 1.0806 0.9748 -2.3757 7 6 1.9932 -0.4015 -3.7284 8 7 1.6448 0.2776 -4.7994 9 14 2.9635 -1.9881 -3.9030 10 1 2.0243 -3.1323 -4.0203 11 1 3.8124 -1.9177 -5.1194 12 1 3.8251 -2.1754 -2.7082 13 6 2.0400 -0.7214 1.2492 14 7 1.6424 0.0317 2.4461 15 6 1.7744 -0.7927 3.6547 16 6 2.4179 1.2733 2.5685 17 6 1.8142 2.1450 3.6715 18 6 2.6676 3.4019 3.8528 19 1 2.7738 3.9101 2.8944 20 6 4.0504 3.0080 4.3770 21 6 4.8940 4.2703 4.5759 22 6 4.1704 5.2111 5.5434 23 6 2.7841 5.5410 4.9853 24 7 2.0164 4.3010 4.8140 25 6 0.6335 4.5897 4.4114 26 1 -0.3633 0.4376 -0.9299 27 1 -0.3633 -1.0240 0.0861 28 1 -0.3632 0.5866 0.8438 29 1 3.1263 -0.7994 -1.2057 30 1 1.6054 -1.7197 -1.2954 31 1 1.8927 -0.0449 -5.6801 32 1 3.1270 -0.7928 1.2092 33 1 1.6114 -1.7227 1.2908 34 1 2.8262 -1.0233 3.8243 35 1 1.3793 -0.2471 4.5116 36 1 1.2156 -1.7196 3.5251 37 1 3.4510 1.0332 2.8199 38 1 2.3904 1.8138 1.6224 39 1 0.7998 2.4316 3.3938 40 1 1.7904 1.5841 4.6058 41 1 3.9441 2.4876 5.3288 42 1 4.5398 2.3531 3.6562 43 1 5.8648 3.9982 4.9901 44 1 5.0342 4.7696 3.6172 45 1 4.0660 4.7253 6.5135 46 1 4.7456 6.1301 5.6559 47 1 2.2608 6.1993 5.6788 48 1 2.8897 6.0390 4.0215 49 1 0.0401 3.6772 4.4696 50 1 0.2104 5.3413 5.0779 51 1 0.6238 4.9647 3.3880 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602473220.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:18 Heat of formation + Delta-G solvation = -17.680632 kcal Electronic energy + Delta-G solvation = -23386.431240 eV Core-core repulsion = 20319.663530 eV Total energy + Delta-G solvation = -3066.767710 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.63268 -37.84946 -34.76315 -33.77629 -32.83015 -31.88678 -28.71399 -27.74817 -26.77763 -26.50295 -24.80771 -23.32014 -22.72590 -21.31381 -20.47931 -19.79216 -18.88789 -16.76583 -16.10580 -15.62358 -15.44947 -14.95245 -14.61597 -14.47131 -14.30799 -14.11394 -13.87775 -13.48036 -13.29424 -12.99304 -12.67432 -12.42804 -12.28530 -12.18098 -11.84835 -11.76685 -11.65815 -11.50985 -11.31816 -11.19294 -10.92880 -10.88015 -10.75973 -10.66869 -10.43693 -10.40886 -10.17563 -9.71406 -9.63596 -9.35345 -9.02932 -8.49462 -8.46318 -8.01524 -5.99959 -3.96455 3.32729 3.40001 3.43714 3.67445 4.18980 4.48688 4.58240 4.67744 4.70992 4.88085 5.11393 5.17732 5.20074 5.26780 5.33262 5.35800 5.36551 5.41730 5.47431 5.55314 5.56330 5.61099 5.65914 5.72986 5.76899 5.80567 5.82769 5.89456 5.95220 5.96532 6.03622 6.08814 6.15787 6.23799 6.28721 6.33872 6.48038 6.65696 6.87239 6.93141 6.96771 7.07928 7.20027 7.31464 7.33859 7.42506 7.54442 7.85727 8.60224 9.06091 9.63217 11.13545 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.020223 B = 0.003391 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.196094 B = 8255.258061 C = 8518.316641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.071 4.071 3 H 0.060 0.940 4 C -0.010 4.010 5 C -0.511 4.511 6 H 0.073 0.927 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.058 3.942 14 N -0.537 5.537 15 C 0.024 3.976 16 C 0.053 3.947 17 C -0.110 4.110 18 C 0.086 3.914 19 H 0.042 0.958 20 C -0.113 4.113 21 C -0.123 4.123 22 C -0.116 4.116 23 C 0.055 3.945 24 N -0.539 5.539 25 C 0.021 3.979 26 H 0.059 0.941 27 H 0.037 0.963 28 H 0.043 0.957 29 H 0.011 0.989 30 H 0.011 0.989 31 H 0.262 0.738 32 H 0.027 0.973 33 H 0.067 0.933 34 H 0.019 0.981 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.032 0.968 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.072 0.928 48 H 0.032 0.968 49 H 0.075 0.925 50 H 0.063 0.937 51 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.187 6.658 22.528 23.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.090 4.090 3 H 0.078 0.922 4 C -0.048 4.048 5 C -0.549 4.549 6 H 0.091 0.909 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.069 4.069 14 N -0.261 5.261 15 C -0.124 4.124 16 C -0.075 4.075 17 C -0.148 4.148 18 C -0.023 4.023 19 H 0.060 0.940 20 C -0.151 4.151 21 C -0.161 4.161 22 C -0.154 4.154 23 C -0.073 4.073 24 N -0.263 5.263 25 C -0.127 4.127 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.030 0.970 30 H 0.029 0.971 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.037 0.963 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.050 0.950 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.090 0.910 48 H 0.050 0.950 49 H 0.093 0.907 50 H 0.082 0.918 51 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 2.686 6.541 22.736 23.810 hybrid contribution 1.409 -0.653 -1.011 1.853 sum 4.095 5.888 21.724 22.877 Atomic orbital electron populations 1.21582 0.95349 1.00248 1.00863 1.21010 0.96288 0.99065 0.92616 0.92162 1.19621 0.95645 0.95905 0.93598 1.21135 1.35138 1.09537 0.89086 0.90852 1.25030 0.95697 0.96917 0.95965 1.69917 1.47258 1.39361 0.97983 0.86807 0.80656 0.84431 0.77553 1.20365 1.21524 1.19148 1.22357 0.97434 0.97137 0.90019 1.61957 1.56012 1.05500 1.02615 1.22399 0.99067 0.97656 0.93321 1.22197 0.94420 0.91434 0.99478 1.21686 0.99546 0.94587 0.98935 1.21631 0.94019 0.93527 0.93085 0.93957 1.21685 0.94241 0.97398 1.01740 1.21601 0.98551 0.96435 0.99514 1.21580 0.94914 0.99350 0.99548 1.22090 0.94537 0.91136 0.99554 1.61931 1.02275 1.14273 1.47857 1.22421 0.89691 1.01816 0.98772 0.92165 0.94431 0.93819 0.97045 0.97114 0.92867 0.95428 0.91412 0.96273 0.91591 0.91805 0.95013 0.90266 0.90808 0.91314 0.91267 0.91267 0.91883 0.92214 0.91214 0.91770 0.90952 0.95012 0.90651 0.91798 0.95422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.90 37.16 0.33 -2.07 16 2 C -0.07 -1.42 2.35 -90.61 -0.21 -1.63 16 3 H 0.06 1.25 6.45 -51.93 -0.34 0.92 16 4 C -0.01 -0.24 3.52 -27.88 -0.10 -0.33 16 5 C -0.51 -14.55 8.89 -34.44 -0.31 -14.85 16 6 H 0.07 2.24 7.32 -52.49 -0.38 1.86 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -28.15 13.96 55.43 0.77 -27.37 16 9 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 13 C 0.06 0.97 4.37 -3.83 -0.02 0.95 16 14 N -0.54 -7.74 4.24 -242.92 -1.03 -8.77 16 15 C 0.02 0.29 9.28 60.07 0.56 0.84 16 16 C 0.05 0.71 4.64 -3.82 -0.02 0.69 16 17 C -0.11 -1.26 4.43 -26.73 -0.12 -1.38 16 18 C 0.09 0.94 1.89 -67.73 -0.13 0.81 16 19 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 20 C -0.11 -1.12 5.12 -26.65 -0.14 -1.26 16 21 C -0.12 -1.09 6.00 -26.60 -0.16 -1.25 16 22 C -0.12 -0.95 6.09 -26.65 -0.16 -1.12 16 23 C 0.05 0.50 5.46 -3.84 -0.02 0.48 16 24 N -0.54 -5.55 4.75 -234.93 -1.12 -6.67 16 25 C 0.02 0.20 8.90 60.06 0.53 0.74 16 26 H 0.06 1.31 6.83 -51.92 -0.35 0.95 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.77 7.88 -51.93 -0.41 0.36 16 29 H 0.01 0.27 7.20 -51.93 -0.37 -0.10 16 30 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 31 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 32 H 0.03 0.46 8.05 -51.93 -0.42 0.05 16 33 H 0.07 1.11 7.88 -51.93 -0.41 0.70 16 34 H 0.02 0.22 8.13 -51.93 -0.42 -0.20 16 35 H 0.07 0.71 6.49 -51.93 -0.34 0.38 16 36 H 0.06 0.74 7.96 -51.93 -0.41 0.33 16 37 H 0.03 0.41 6.43 -51.93 -0.33 0.08 16 38 H 0.08 1.20 6.33 -51.93 -0.33 0.87 16 39 H 0.07 0.90 6.14 -51.93 -0.32 0.59 16 40 H 0.07 0.78 6.45 -51.93 -0.33 0.45 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.71 6.56 -51.93 -0.34 0.37 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.58 8.01 -51.93 -0.42 0.17 16 48 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 49 H 0.07 0.73 6.47 -51.93 -0.34 0.39 16 50 H 0.06 0.53 7.98 -51.93 -0.41 0.11 16 51 H 0.03 0.28 8.12 -51.93 -0.42 -0.14 16 LS Contribution 374.18 15.07 5.64 5.64 Total: -1.00 -30.04 374.18 -10.50 -40.54 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -10.04 Total: -3.10 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -0.05 Total: -17.59 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: -1.37 Total: -42.81 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.04 -10.50 -40.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602473220.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.863 kcal (2) G-P(sol) polarization free energy of solvation -30.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds