Wall clock time and date at job start Tue Mar 31 2020 06:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46817 * 2 1 4 4 C 1.53002 * 109.47249 * 119.99605 * 2 1 3 5 5 C 1.50700 * 109.47180 * 295.00724 * 4 2 1 6 6 H 1.07997 * 120.00329 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00129 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99850 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00233 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47230 * 90.00015 * 9 7 5 11 11 H 1.48507 * 109.47290 * 209.99654 * 9 7 5 12 12 H 1.48498 * 109.47266 * 329.99829 * 9 7 5 13 13 C 1.52995 * 109.47418 * 239.99982 * 2 1 3 14 14 N 1.46907 * 109.47064 * 63.70814 * 13 2 1 15 15 C 1.46904 * 110.99775 * 200.28814 * 14 13 2 16 16 C 1.46894 * 110.99875 * 76.33646 * 14 13 2 17 17 C 1.53003 * 109.46791 * 190.00237 * 16 14 13 18 18 C 1.53001 * 109.46639 * 183.49607 * 17 16 14 19 19 H 1.08996 * 109.46498 * 55.91580 * 18 17 16 20 20 C 1.53036 * 109.46734 * 295.93052 * 18 17 16 21 21 C 1.53115 * 109.28015 * 180.81751 * 20 18 17 22 22 C 1.53116 * 109.15952 * 57.66077 * 21 20 18 23 23 C 1.53043 * 109.27443 * 302.34020 * 22 21 20 24 24 N 1.46825 * 109.51469 * 59.18589 * 23 22 21 25 25 C 1.46902 * 110.98091 * 174.15474 * 24 23 22 26 26 H 1.09004 * 109.46721 * 185.10580 * 1 2 3 27 27 H 1.08995 * 109.47282 * 305.10854 * 1 2 3 28 28 H 1.08995 * 109.46927 * 65.11201 * 1 2 3 29 29 H 1.09001 * 109.46694 * 54.99894 * 4 2 1 30 30 H 1.08991 * 109.47331 * 175.00384 * 4 2 1 31 31 H 0.96998 * 119.99941 * 179.97438 * 8 7 5 32 32 H 1.09006 * 109.47136 * 303.71032 * 13 2 1 33 33 H 1.09002 * 109.47270 * 183.70911 * 13 2 1 34 34 H 1.08998 * 109.46954 * 298.23298 * 15 14 13 35 35 H 1.08997 * 109.46947 * 58.23030 * 15 14 13 36 36 H 1.09000 * 109.46926 * 178.23094 * 15 14 13 37 37 H 1.08990 * 109.47634 * 69.99727 * 16 14 13 38 38 H 1.09000 * 109.47190 * 309.99493 * 16 14 13 39 39 H 1.08992 * 109.47302 * 63.49668 * 17 16 14 40 40 H 1.08994 * 109.46926 * 303.48892 * 17 16 14 41 41 H 1.08999 * 109.50013 * 300.76426 * 20 18 17 42 42 H 1.09006 * 109.49747 * 60.87421 * 20 18 17 43 43 H 1.08999 * 109.52146 * 177.56207 * 21 20 18 44 44 H 1.08995 * 109.52291 * 297.68974 * 21 20 18 45 45 H 1.08993 * 109.50462 * 62.28315 * 22 21 20 46 46 H 1.09006 * 109.50296 * 182.40378 * 22 21 20 47 47 H 1.09006 * 109.45984 * 179.19654 * 23 22 21 48 48 H 1.09003 * 109.46210 * 299.17284 * 23 22 21 49 49 H 1.09000 * 109.46840 * 192.23286 * 25 24 23 50 50 H 1.08998 * 109.47172 * 312.22820 * 25 24 23 51 51 H 1.09000 * 109.47273 * 72.22950 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0805 0.9746 2.3757 7 6 1.9923 -0.4021 3.7284 8 7 2.6747 -1.5196 3.8513 9 14 1.4986 0.5629 5.2496 10 1 0.1710 0.0956 5.7231 11 1 2.5076 0.3522 6.3187 12 1 1.4247 2.0082 4.9167 13 6 2.0401 -0.7212 -1.2492 14 7 1.6249 0.0211 -2.4470 15 6 1.6576 -0.8394 -3.6372 16 6 2.4556 1.2172 -2.6392 17 6 1.8452 2.0910 -3.7369 18 6 2.7560 3.2924 -3.9978 19 1 3.7577 2.9416 -4.2460 20 6 2.8181 4.1672 -2.7437 21 6 3.7142 5.3785 -3.0162 22 6 3.1623 6.1519 -4.2170 23 6 3.0902 5.2195 -5.4285 24 7 2.2212 4.0776 -5.1176 25 6 2.0175 3.2336 -6.3026 26 1 -0.3633 -1.0236 0.0915 27 1 -0.3633 0.5910 0.8406 28 1 -0.3633 0.4325 -0.9322 29 1 1.6054 -1.7197 1.2952 30 1 3.1263 -0.7993 1.2057 31 1 2.9220 -1.8425 4.7319 32 1 1.6235 -1.7280 -1.2831 33 1 3.1281 -0.7791 -1.2165 34 1 2.6772 -1.1850 -3.8078 35 1 1.0041 -1.6979 -3.4828 36 1 1.3159 -0.2737 -4.5040 37 1 3.4621 0.9176 -2.9310 38 1 2.5003 1.7821 -1.7081 39 1 0.8636 2.4417 -3.4183 40 1 1.7432 1.5070 -4.6515 41 1 1.8148 4.5070 -2.4870 42 1 3.2297 3.5887 -1.9166 43 1 3.7266 6.0268 -2.1400 44 1 4.7273 5.0406 -3.2338 45 1 2.1644 6.5229 -3.9834 46 1 3.8199 6.9915 -4.4425 47 1 2.6842 5.7633 -6.2816 48 1 4.0904 4.8596 -5.6698 49 1 1.2092 2.5279 -6.1114 50 1 1.7579 3.8610 -7.1553 51 1 2.9344 2.6858 -6.5204 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602473221.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:21 Heat of formation + Delta-G solvation = -21.304742 kcal Electronic energy + Delta-G solvation = -23379.109888 eV Core-core repulsion = 20312.185024 eV Total energy + Delta-G solvation = -3066.924863 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.61179 -37.75083 -34.65897 -33.73783 -32.83643 -31.81810 -28.62097 -27.22829 -26.76494 -26.37070 -24.79441 -23.35152 -22.82848 -21.40531 -20.46832 -19.77606 -18.81324 -16.38992 -16.05759 -15.58247 -15.41917 -14.76027 -14.63784 -14.50548 -14.32058 -14.06658 -13.98851 -13.34999 -13.21670 -12.90828 -12.49755 -12.35031 -12.26124 -12.11768 -11.85199 -11.75498 -11.53464 -11.26981 -11.18222 -11.08583 -10.86466 -10.79067 -10.77070 -10.65440 -10.36057 -10.26789 -10.23400 -10.08448 -9.53413 -9.06273 -8.91480 -8.47653 -8.29049 -7.95847 -5.94048 -3.94766 3.35603 3.41735 3.45257 3.67127 4.23349 4.51682 4.61094 4.72227 4.75654 4.90107 5.13847 5.19157 5.22029 5.25415 5.32926 5.37592 5.41289 5.42401 5.52200 5.56598 5.58235 5.64228 5.68017 5.75367 5.79913 5.81715 5.89837 5.99567 6.01573 6.05731 6.06992 6.21848 6.24409 6.30043 6.38861 6.45273 6.62014 6.78694 6.91666 6.96897 7.08481 7.22548 7.26802 7.44421 7.50088 7.74150 7.90776 8.06806 8.51460 9.11867 9.68486 11.17597 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.018151 B = 0.003598 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.267440 B = 7780.041304 C = 8907.839864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.078 4.078 3 H 0.054 0.946 4 C 0.027 3.973 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.060 3.940 14 N -0.537 5.537 15 C 0.024 3.976 16 C 0.055 3.945 17 C -0.110 4.110 18 C 0.089 3.911 19 H 0.036 0.964 20 C -0.115 4.115 21 C -0.123 4.123 22 C -0.117 4.117 23 C 0.056 3.944 24 N -0.538 5.538 25 C 0.023 3.977 26 H 0.038 0.962 27 H 0.050 0.950 28 H 0.044 0.956 29 H 0.015 0.985 30 H 0.011 0.989 31 H 0.259 0.741 32 H 0.066 0.934 33 H 0.029 0.971 34 H 0.018 0.982 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.025 0.975 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.072 0.928 48 H 0.029 0.971 49 H 0.073 0.927 50 H 0.063 0.937 51 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.974 10.440 -20.455 22.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.097 4.097 3 H 0.072 0.928 4 C -0.011 4.011 5 C -0.548 4.548 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.067 4.067 14 N -0.261 5.261 15 C -0.125 4.125 16 C -0.073 4.073 17 C -0.148 4.148 18 C -0.020 4.020 19 H 0.054 0.946 20 C -0.153 4.153 21 C -0.160 4.160 22 C -0.155 4.155 23 C -0.072 4.072 24 N -0.262 5.262 25 C -0.125 4.125 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.033 0.967 30 H 0.029 0.971 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.036 0.964 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.043 0.957 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.082 0.918 47 H 0.090 0.910 48 H 0.047 0.953 49 H 0.092 0.908 50 H 0.082 0.918 51 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 0.117 10.655 -20.119 22.766 hybrid contribution 1.510 -0.239 0.517 1.614 sum 1.627 10.416 -19.602 22.257 Atomic orbital electron populations 1.21562 0.95813 1.00508 0.99993 1.21172 0.95937 0.98953 0.93607 0.92769 1.19137 0.95823 0.95542 0.90586 1.21242 1.34388 1.08234 0.90962 0.92573 1.25019 0.95377 0.95112 0.99073 1.69968 1.39250 1.21300 1.23292 0.86643 0.78206 0.80478 0.82978 1.20730 1.21366 1.19889 1.22328 0.97417 0.97149 0.89817 1.61996 1.53841 1.07150 1.03119 1.22405 0.99376 0.97170 0.93545 1.22162 0.93561 0.92090 0.99506 1.21696 0.99948 0.94549 0.98593 1.21641 0.95996 0.93091 0.91240 0.94559 1.21701 1.00974 0.96001 0.96618 1.21594 0.98881 0.97391 0.98183 1.21591 1.01793 0.97364 0.94734 1.22085 0.94647 0.92359 0.98061 1.61911 1.48446 1.09610 1.06279 1.22397 1.00476 0.97240 0.92392 0.94327 0.93120 0.93661 0.96670 0.97063 0.93159 0.91508 0.95290 0.96388 0.91663 0.91873 0.95702 0.89905 0.90265 0.91886 0.90755 0.90859 0.91624 0.92496 0.91027 0.91818 0.91002 0.95281 0.90838 0.91795 0.95865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.86 37.16 0.33 -2.09 16 2 C -0.08 -1.62 2.39 -90.62 -0.22 -1.84 16 3 H 0.05 1.15 6.72 -51.93 -0.35 0.80 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.43 8.47 -34.44 -0.29 -14.72 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 9 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.06 1.07 4.41 -3.82 -0.02 1.05 16 14 N -0.54 -8.09 4.00 -242.92 -0.97 -9.06 16 15 C 0.02 0.30 9.30 60.07 0.56 0.85 16 16 C 0.06 0.76 4.43 -3.83 -0.02 0.74 16 17 C -0.11 -1.29 4.42 -26.73 -0.12 -1.41 16 18 C 0.09 0.98 1.90 -67.72 -0.13 0.85 16 19 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 20 C -0.12 -1.28 5.09 -26.65 -0.14 -1.42 16 21 C -0.12 -1.18 6.00 -26.61 -0.16 -1.34 16 22 C -0.12 -1.02 6.09 -26.65 -0.16 -1.18 16 23 C 0.06 0.51 5.45 -3.84 -0.02 0.49 16 24 N -0.54 -5.53 4.75 -234.94 -1.11 -6.65 16 25 C 0.02 0.20 8.85 60.07 0.53 0.74 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.05 1.06 7.11 -51.93 -0.37 0.69 16 28 H 0.04 0.82 7.57 -51.93 -0.39 0.42 16 29 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.07 1.19 7.85 -51.93 -0.41 0.78 16 33 H 0.03 0.53 7.99 -51.93 -0.41 0.11 16 34 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.06 0.80 8.03 -51.93 -0.42 0.38 16 36 H 0.06 0.70 6.30 -51.93 -0.33 0.37 16 37 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 38 H 0.08 1.25 5.21 -51.93 -0.27 0.98 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 0.70 4.48 -51.93 -0.23 0.46 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.07 0.86 6.66 -51.93 -0.35 0.52 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.57 7.99 -51.93 -0.41 0.15 16 48 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 49 H 0.07 0.65 6.62 -51.93 -0.34 0.31 16 50 H 0.06 0.48 7.94 -51.93 -0.41 0.07 16 51 H 0.02 0.20 8.10 -51.93 -0.42 -0.22 16 LS Contribution 378.23 15.07 5.70 5.70 Total: -1.00 -29.75 378.23 -10.86 -40.61 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -10.12 Total: -3.73 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -0.07 Total: -17.22 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: -1.35 Total: -42.23 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.75 -10.86 -40.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602473221.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.306 kcal (2) G-P(sol) polarization free energy of solvation -29.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds