Wall clock time and date at job start Tue Mar 31 2020 06:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47653 * 2 1 4 4 C 1.53007 * 109.47208 * 120.00334 * 2 1 3 5 5 C 1.50704 * 109.46710 * 294.99831 * 4 2 1 6 6 H 1.08002 * 119.99945 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99798 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00083 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99911 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47583 * 89.99813 * 9 7 5 11 11 H 1.48496 * 109.47000 * 210.00156 * 9 7 5 12 12 H 1.48503 * 109.46771 * 329.99413 * 9 7 5 13 13 C 1.53006 * 109.47309 * 240.00048 * 2 1 3 14 14 N 1.46891 * 109.47131 * 65.88885 * 13 2 1 15 15 C 1.46896 * 111.00056 * 200.34183 * 14 13 2 16 16 C 1.46903 * 111.00083 * 76.39007 * 14 13 2 17 17 C 1.52993 * 109.47417 * 190.00006 * 16 14 13 18 18 C 1.53001 * 109.47267 * 174.66384 * 17 16 14 19 19 H 1.09000 * 109.46658 * 302.68813 * 18 17 16 20 20 C 1.53035 * 109.45827 * 62.66858 * 18 17 16 21 21 C 1.53121 * 109.27806 * 179.19316 * 20 18 17 22 22 C 1.53122 * 109.16256 * 302.34581 * 21 20 18 23 23 C 1.53035 * 109.27854 * 57.64899 * 22 21 20 24 24 N 1.46845 * 109.52471 * 300.82619 * 23 22 21 25 25 C 1.46907 * 110.99848 * 185.83902 * 24 23 22 26 26 H 1.08997 * 109.47151 * 305.02066 * 1 2 3 27 27 H 1.08999 * 109.46852 * 65.02151 * 1 2 3 28 28 H 1.09004 * 109.47236 * 185.02144 * 1 2 3 29 29 H 1.08996 * 109.46978 * 54.99829 * 4 2 1 30 30 H 1.08994 * 109.47339 * 175.00191 * 4 2 1 31 31 H 0.97005 * 119.99756 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.46713 * 305.88770 * 13 2 1 33 33 H 1.09005 * 109.47044 * 185.88999 * 13 2 1 34 34 H 1.08998 * 109.47648 * 299.96826 * 15 14 13 35 35 H 1.09000 * 109.46880 * 59.97272 * 15 14 13 36 36 H 1.09004 * 109.47227 * 179.97438 * 15 14 13 37 37 H 1.09004 * 109.47124 * 309.99864 * 16 14 13 38 38 H 1.08998 * 109.47004 * 69.99698 * 16 14 13 39 39 H 1.08994 * 109.47447 * 294.66685 * 17 16 14 40 40 H 1.09003 * 109.47389 * 54.66819 * 17 16 14 41 41 H 1.08995 * 109.50618 * 299.13168 * 20 18 17 42 42 H 1.09003 * 109.50913 * 59.21432 * 20 18 17 43 43 H 1.09001 * 109.52126 * 62.25039 * 21 20 18 44 44 H 1.08994 * 109.52863 * 182.37393 * 21 20 18 45 45 H 1.08993 * 109.50357 * 177.59334 * 22 21 20 46 46 H 1.08995 * 109.50029 * 297.66914 * 22 21 20 47 47 H 1.09004 * 109.46090 * 60.83806 * 23 22 21 48 48 H 1.08998 * 109.46178 * 180.80646 * 23 22 21 49 49 H 1.09001 * 109.46672 * 295.93690 * 25 24 23 50 50 H 1.08998 * 109.47203 * 55.93881 * 25 24 23 51 51 H 1.08992 * 109.46822 * 175.94039 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9741 2.3757 7 6 1.9923 -0.4023 3.7283 8 7 2.6755 -1.5193 3.8512 9 14 1.4975 0.5621 5.2497 10 1 0.1701 0.0938 5.7228 11 1 2.5064 0.3518 6.3189 12 1 1.4229 2.0074 4.9170 13 6 2.0400 -0.7213 -1.2493 14 7 1.6699 0.0484 -2.4444 15 6 1.6962 -0.7981 -3.6447 16 6 2.5414 1.2197 -2.6071 17 6 1.9786 2.1258 -3.7039 18 6 2.8096 3.4081 -3.7825 19 1 2.8067 3.9028 -2.8112 20 6 4.2477 3.0604 -4.1734 21 6 5.0705 4.3481 -4.2705 22 6 4.4189 5.2852 -5.2912 23 6 2.9758 5.5683 -4.8679 24 7 2.2304 4.3055 -4.7903 25 6 0.8069 4.5500 -4.5216 26 1 -0.3633 0.5897 0.8416 27 1 -0.3633 0.4340 -0.9315 28 1 -0.3634 -1.0237 0.0900 29 1 1.6054 -1.7199 1.2951 30 1 3.1263 -0.7995 1.2056 31 1 2.9221 -1.8427 4.7319 32 1 1.5931 -1.7140 -1.3035 33 1 3.1250 -0.8135 -1.1981 34 1 2.7001 -1.1989 -3.7848 35 1 0.9902 -1.6199 -3.5252 36 1 1.4178 -0.2035 -4.5148 37 1 2.5876 1.7715 -1.6682 38 1 3.5429 0.8915 -2.8853 39 1 2.0204 1.6065 -4.6613 40 1 0.9436 2.3773 -3.4720 41 1 4.6826 2.4069 -3.4173 42 1 4.2501 2.5528 -5.1381 43 1 5.1008 4.8353 -3.2959 44 1 6.0849 4.1091 -4.5898 45 1 4.9760 6.2211 -5.3335 46 1 4.4247 4.8136 -6.2738 47 1 2.9721 6.0527 -3.8914 48 1 2.5045 6.2238 -5.6002 49 1 0.6966 5.0120 -3.5405 50 1 0.4023 5.2154 -5.2842 51 1 0.2659 3.6040 -4.5406 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602473225.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:25 Heat of formation + Delta-G solvation = -21.634038 kcal Electronic energy + Delta-G solvation = -23340.083018 eV Core-core repulsion = 20273.143876 eV Total energy + Delta-G solvation = -3066.939143 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.60827 -37.74239 -34.66856 -33.75714 -32.83494 -31.81967 -28.64276 -27.21114 -26.75414 -26.37229 -24.77580 -23.40222 -22.82478 -21.40884 -20.47568 -19.75828 -18.83713 -16.38482 -16.06010 -15.60265 -15.31249 -14.86582 -14.59570 -14.49577 -14.40738 -14.06347 -13.96014 -13.37355 -13.22062 -12.86994 -12.51827 -12.36516 -12.28980 -12.10028 -11.84745 -11.57896 -11.54395 -11.34880 -11.26102 -11.12004 -10.85600 -10.80951 -10.73383 -10.65735 -10.41700 -10.25071 -10.23570 -10.15102 -9.55727 -9.07582 -8.92623 -8.45826 -8.30346 -7.94361 -5.95269 -3.96083 3.34255 3.40421 3.43722 3.69292 4.25024 4.50350 4.60809 4.70000 4.72736 4.89120 5.12899 5.19985 5.22988 5.29873 5.36983 5.40366 5.42314 5.43830 5.51008 5.59073 5.61490 5.64189 5.70482 5.76440 5.78639 5.84004 5.86906 5.94814 6.01253 6.03226 6.09338 6.17177 6.22374 6.26286 6.31935 6.43809 6.60590 6.76238 6.94188 6.97862 7.06541 7.20155 7.25001 7.44768 7.50344 7.72916 7.89681 8.05540 8.50126 9.10449 9.67158 11.16327 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.017677 B = 0.003450 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.639331 B = 8113.977966 C = 8692.724136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.078 4.078 3 H 0.054 0.946 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.060 3.940 14 N -0.539 5.539 15 C 0.024 3.976 16 C 0.055 3.945 17 C -0.109 4.109 18 C 0.086 3.914 19 H 0.042 0.958 20 C -0.113 4.113 21 C -0.123 4.123 22 C -0.116 4.116 23 C 0.055 3.945 24 N -0.539 5.539 25 C 0.020 3.980 26 H 0.050 0.950 27 H 0.043 0.957 28 H 0.038 0.962 29 H 0.015 0.985 30 H 0.011 0.989 31 H 0.259 0.741 32 H 0.066 0.934 33 H 0.030 0.970 34 H 0.019 0.981 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.031 0.969 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.069 0.931 47 H 0.031 0.969 48 H 0.072 0.928 49 H 0.025 0.975 50 H 0.064 0.936 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.166 10.597 -20.011 22.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.097 4.097 3 H 0.072 0.928 4 C -0.011 4.011 5 C -0.549 4.549 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.067 4.067 14 N -0.263 5.263 15 C -0.125 4.125 16 C -0.073 4.073 17 C -0.147 4.147 18 C -0.022 4.022 19 H 0.060 0.940 20 C -0.151 4.151 21 C -0.161 4.161 22 C -0.154 4.154 23 C -0.073 4.073 24 N -0.263 5.263 25 C -0.128 4.128 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.033 0.967 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.048 0.952 34 H 0.037 0.963 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.049 0.951 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.050 0.950 48 H 0.090 0.910 49 H 0.044 0.956 50 H 0.082 0.918 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.800 10.416 -20.272 22.805 hybrid contribution 0.566 0.539 1.665 1.840 sum 1.366 10.955 -18.606 21.635 Atomic orbital electron populations 1.21565 0.95890 1.00525 0.99896 1.21175 0.95853 0.98975 0.93686 0.92808 1.19139 0.95848 0.95537 0.90564 1.21241 1.34416 1.08251 0.90992 0.92633 1.25017 0.95367 0.95112 0.99058 1.69967 1.39188 1.21289 1.23301 0.86645 0.78228 0.80442 0.83003 1.20718 1.21332 1.19942 1.22324 0.97779 0.96780 0.89834 1.62002 1.52928 1.08317 1.03007 1.22399 0.99551 0.97183 0.93338 1.22152 0.93670 0.92292 0.99211 1.21693 0.99834 0.94219 0.98992 1.21633 0.94417 0.93422 0.92761 0.93971 1.21682 0.93865 0.97335 1.02218 1.21600 0.98924 0.96307 0.99272 1.21576 0.94700 0.99395 0.99718 1.22079 0.94489 0.90881 0.99831 1.61933 1.02483 1.13523 1.48397 1.22435 0.88862 1.02070 0.99426 0.93126 0.93811 0.94266 0.96652 0.97027 0.93140 0.91523 0.95213 0.96272 0.91761 0.91739 0.90456 0.95061 0.91454 0.90748 0.91166 0.91263 0.92231 0.91846 0.91790 0.91217 0.95039 0.90987 0.95608 0.91762 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.87 37.16 0.33 -2.08 16 2 C -0.08 -1.63 2.40 -90.62 -0.22 -1.84 16 3 H 0.05 1.15 6.68 -51.93 -0.35 0.80 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.47 8.47 -34.44 -0.29 -14.76 16 6 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 9 Si 0.89 21.90 29.54 -169.99 -5.02 16.87 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.06 1.07 4.39 -3.83 -0.02 1.05 16 14 N -0.54 -8.09 4.10 -242.92 -1.00 -9.09 16 15 C 0.02 0.30 9.31 60.06 0.56 0.86 16 16 C 0.06 0.76 4.34 -3.83 -0.02 0.74 16 17 C -0.11 -1.28 4.17 -26.73 -0.11 -1.39 16 18 C 0.09 0.95 1.94 -67.72 -0.13 0.82 16 19 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 20 C -0.11 -1.16 5.06 -26.65 -0.13 -1.29 16 21 C -0.12 -1.12 6.00 -26.61 -0.16 -1.28 16 22 C -0.12 -0.97 6.09 -26.65 -0.16 -1.13 16 23 C 0.06 0.51 5.46 -3.84 -0.02 0.48 16 24 N -0.54 -5.61 4.75 -234.93 -1.12 -6.72 16 25 C 0.02 0.19 9.06 60.07 0.54 0.74 16 26 H 0.05 1.06 7.10 -51.93 -0.37 0.69 16 27 H 0.04 0.78 7.65 -51.93 -0.40 0.39 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 32 H 0.07 1.18 7.88 -51.93 -0.41 0.77 16 33 H 0.03 0.54 7.99 -51.93 -0.41 0.13 16 34 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.06 0.79 8.07 -51.93 -0.42 0.37 16 36 H 0.06 0.72 6.41 -51.93 -0.33 0.39 16 37 H 0.08 1.19 6.60 -51.93 -0.34 0.85 16 38 H 0.03 0.42 6.78 -51.93 -0.35 0.07 16 39 H 0.07 0.78 6.73 -51.93 -0.35 0.43 16 40 H 0.07 0.92 6.16 -51.93 -0.32 0.60 16 41 H 0.07 0.74 6.66 -51.93 -0.35 0.40 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 49 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 50 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 51 H 0.08 0.75 6.14 -51.93 -0.32 0.43 16 LS Contribution 378.56 15.07 5.70 5.70 Total: -1.00 -29.69 378.56 -10.88 -40.57 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -10.14 Total: -3.82 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -0.05 Total: -17.02 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: -1.37 Total: -42.30 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.69 -10.88 -40.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602473225.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.935 kcal (2) G-P(sol) polarization free energy of solvation -29.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds